Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1815
  Reference Plasmid   1111525849649755_bin.32__k141_456201
  Reference Plasmid Size   74270
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0017333 JDIHGPPD_00073 69411 9 Skin 0.03 protein_coding synonymous_variant LOW 51A>G Ala17Ala
M0017334 JDIHGPPD_00074 70037 3 Skin 0.01 protein_coding missense_variant MODERATE 398G>A Gly133Glu
M0017335 JDIHGPPD_00072 68136 14 Skin 0.05 protein_coding synonymous_variant LOW 102C>T Gly34Gly
M0017336 JDIHGPPD_00072 68177 14 Skin 0.05 protein_coding missense_variant MODERATE 143G>C Ser48Thr
M0017337 JDIHGPPD_00072 68188 14 Skin 0.05 protein_coding missense_variant MODERATE 154G>C Ala52Pro
M0017338 JDIHGPPD_00059 56957 3 Skin 0.01 protein_coding synonymous_variant LOW 702C>A Leu234Leu
M0017339 JDIHGPPD_00060 58290 60 Skin 0.22 protein_coding synonymous_variant LOW 259T>C Leu87Leu
M0017340 JDIHGPPD_00061 59082 61 Skin 0.22 protein_coding missense_variant MODERATE 352C>A Leu118Ile
M0017341 JDIHGPPD_00061 59087 62 Skin 0.23 protein_coding synonymous_variant LOW 357T>C Ala119Ala
M0017342 JDIHGPPD_00063 60909 81 Skin 0.30 protein_coding missense_variant MODERATE 280G>C Ala94Pro
M0017343 JDIHGPPD_00060 58000 5 Skin 0.02 protein_coding synonymous_variant LOW 549T>C Ser183Ser
M0017344 JDIHGPPD_00060 58009 5 Skin 0.02 protein_coding synonymous_variant LOW 540A>C Gly180Gly
M0017345 JDIHGPPD_00061 59504 5 Skin 0.02 protein_coding synonymous_variant LOW 774C>G Thr258Thr
M0017346 JDIHGPPD_00061 59554 5 Skin 0.02 protein_coding missense_variant MODERATE 824A>G His275Arg
M0017347 JDIHGPPD_00060 63145 79 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -4597T>C None
M0017348 JDIHGPPD_00066 63669 63 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -1321A>C None
M0017349 JDIHGPPD_00066 65124 7 Skin 0.03 protein_coding synonymous_variant LOW 135G>C Ala45Ala
M0017350 JDIHGPPD_00067 65152 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -36G>A None
M0017351 JDIHGPPD_00067 65153 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -35T>A None
M0017352 JDIHGPPD_00075 72161 4 Skin 0.01 protein_coding missense_variant MODERATE 142C>G Gln48Glu
M0017353 JDIHGPPD_00062 60331 7 Skin 0.03 protein_coding synonymous_variant LOW 202T>C Leu68Leu
M0017354 JDIHGPPD_00062 60391 6 Skin 0.02 protein_coding synonymous_variant LOW 262T>C Leu88Leu
M0017355 JDIHGPPD_00060 63355 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4807A>G None
M0017356 JDIHGPPD_00060 63356 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4808A>C None
M0017357 JDIHGPPD_00060 63385 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4837G>C None
M0017358 JDIHGPPD_00069 66199 7 Skin 0.03 protein_coding missense_variant MODERATE 279G>C Gln93His
M0017359 JDIHGPPD_00070 67233 6 Skin 0.02 protein_coding synonymous_variant LOW 78A>G Glu26Glu
M0017360 JDIHGPPD_00068 67420 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1800C>T None
M0017361 JDIHGPPD_00071 67664 7 Skin 0.03 protein_coding synonymous_variant LOW 45A>C Ala15Ala
M0017362 JDIHGPPD_00075 72724 4 Skin 0.01 protein_coding synonymous_variant LOW 705T>C Val235Val
M0017363 JDIHGPPD_00055 56178 46 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3964A>G None
M0017364 JDIHGPPD_00055 56212 46 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3998G>T None
M0017365 JDIHGPPD_00059 56345 42 Skin 0.15 protein_coding synonymous_variant LOW 90G>A Leu30Leu
M0017366 JDIHGPPD_00061 58973 12 Skin 0.04 protein_coding synonymous_variant LOW 243A>G Pro81Pro
M0017367 JDIHGPPD_00066 63895 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1095A>C None
M0017368 JDIHGPPD_00066 64300 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -690G>A None
M0017369 JDIHGPPD_00066 64326 5 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -664G>C None
M0017370 JDIHGPPD_00069 66634 8 Skin 0.03 protein_coding synonymous_variant LOW 714C>T Thr238Thr
M0017371 JDIHGPPD_00071 67772 7 Skin 0.03 protein_coding synonymous_variant LOW 153C>A Ala51Ala
M0017372 JDIHGPPD_00044 43226 24 Skin 0.09 protein_coding synonymous_variant LOW 357C>T Asp119Asp
M0017373 JDIHGPPD_00068 67038 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -1418T>A None
M0017374 JDIHGPPD_00068 67078 9 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1458C>T None
M0017375 JDIHGPPD_00066 64507 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -483A>C None
M0017376 JDIHGPPD_00066 64546 6 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -444C>T None
M0017377 JDIHGPPD_00067 65265 9 Skin 0.03 protein_coding synonymous_variant LOW 78T>C Thr26Thr
M0017378 JDIHGPPD_00067 65325 8 Skin 0.03 protein_coding synonymous_variant LOW 138C>G Gly46Gly
M0017379 JDIHGPPD_00070 67112 8 Skin 0.03 protein_coding missense_variant MODERATE 199A>G Arg67Gly
M0017380 JDIHGPPD_00012 11675 21 Skin 0.08 protein_coding missense_variant MODERATE 444A>T Lys148Asn
M0017381 JDIHGPPD_00012 11743 21 Skin 0.08 protein_coding missense_variant MODERATE 512G>T Gly171Val
M0017382 JDIHGPPD_00012 11778 20 Skin 0.07 protein_coding missense_variant MODERATE 547G>C Val183Leu
M0017383 JDIHGPPD_00075 72394 5 Skin 0.02 protein_coding synonymous_variant LOW 375A>G Gly125Gly
M0017384 JDIHGPPD_00076 73603 4 Skin 0.01 protein_coding synonymous_variant LOW 72A>C Pro24Pro
M0017385 JDIHGPPD_00076 73624 4 Skin 0.01 protein_coding synonymous_variant LOW 51C>T Asn17Asn
M0017386 JDIHGPPD_00064 61618 6 Skin 0.02 protein_coding missense_variant MODERATE 518C>G Ala173Gly
M0017387 JDIHGPPD_00060 61769 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3221A>G None
M0017388 JDIHGPPD_00060 61773 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3225T>C None
M0017389 JDIHGPPD_00071 67949 3 Skin 0.01 protein_coding synonymous_variant LOW 330T>G Gly110Gly
M0017390 JDIHGPPD_00069 66750 9 Skin 0.03 protein_coding missense_variant MODERATE 830C>T Ala277Val
M0017391 JDIHGPPD_00047 45169 25 Skin 0.09 protein_coding synonymous_variant LOW 207G>A Leu69Leu
M0017392 JDIHGPPD_00047 45196 25 Skin 0.09 protein_coding synonymous_variant LOW 180C>T Gly60Gly
M0017393 JDIHGPPD_00047 45221 25 Skin 0.09 protein_coding missense_variant MODERATE 155C>T Ala52Val
M0017394 JDIHGPPD_00052 48256 3 Skin 0.01 protein_coding synonymous_variant LOW 627C>T Asp209Asp
M0017395 JDIHGPPD_00053 49102 24 Skin 0.09 protein_coding missense_variant MODERATE 793C>A Gln265Lys
M0017396 JDIHGPPD_00055 50453 27 Skin 0.10 protein_coding missense_variant MODERATE 1762G>A Gly588Ser
M0017397 JDIHGPPD_00056 52744 24 Skin 0.09 protein_coding synonymous_variant LOW 672C>T Ile224Ile
M0017398 JDIHGPPD_00058 54783 4 Skin 0.01 protein_coding synonymous_variant LOW 207A>G Glu69Glu
M0017399 JDIHGPPD_00058 54815 4 Skin 0.01 protein_coding missense_variant MODERATE 239T>C Val80Ala
M0017400 JDIHGPPD_00058 54894 3 Skin 0.01 protein_coding synonymous_variant LOW 318T>C Arg106Arg
M0017401 JDIHGPPD_00058 54907 3 Skin 0.01 protein_coding synonymous_variant LOW 331T>C Leu111Leu
M0017402 JDIHGPPD_00058 54924 3 Skin 0.01 protein_coding synonymous_variant LOW 348G>A Thr116Thr
M0017403 JDIHGPPD_00058 55059 6 Skin 0.02 protein_coding synonymous_variant LOW 483T>C Phe161Phe
M0017404 JDIHGPPD_00058 55170 8 Skin 0.03 protein_coding synonymous_variant LOW 594T>C Ala198Ala
M0017405 JDIHGPPD_00058 55347 44 Skin 0.16 protein_coding synonymous_variant LOW 771A>G Gln257Gln
M0017406 JDIHGPPD_00058 55359 44 Skin 0.16 protein_coding synonymous_variant LOW 783A>G Val261Val
M0017407 JDIHGPPD_00058 56070 9 Skin 0.03 protein_coding synonymous_variant LOW 1494C>T Asp498Asp
M0017408 JDIHGPPD_00060 57910 5 Skin 0.02 protein_coding synonymous_variant LOW 639A>G Leu213Leu
M0017409 JDIHGPPD_00060 57913 5 Skin 0.02 protein_coding synonymous_variant LOW 636A>G Gln212Gln
M0017410 JDIHGPPD_00068 67091 7 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1471C>T None
M0017411 JDIHGPPD_00074 71061 5 Skin 0.02 protein_coding synonymous_variant LOW 1422G>A Val474Val
M0017412 JDIHGPPD_00058 55758 7 Skin 0.03 protein_coding synonymous_variant LOW 1182C>T Gly394Gly
M0017413 JDIHGPPD_00058 56013 7 Skin 0.03 protein_coding synonymous_variant LOW 1437C>T Val479Val
M0017414 JDIHGPPD_00060 58072 9 Skin 0.03 protein_coding synonymous_variant LOW 477G>A Gln159Gln
M0017415 JDIHGPPD_00061 59921 3 Skin 0.01 protein_coding synonymous_variant LOW 1191G>T Leu397Leu
M0017416 JDIHGPPD_00066 64354 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -636G>C None
M0017417 JDIHGPPD_00066 64366 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -624C>T None
M0017418 JDIHGPPD_00066 64375 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -615G>A None
M0017419 JDIHGPPD_00064 61157 8 Skin 0.03 protein_coding missense_variant MODERATE 57C>G His19Gln
M0017420 JDIHGPPD_00047 44737 4 Skin 0.01 protein_coding synonymous_variant LOW 639G>A Ser213Ser
M0017421 JDIHGPPD_00047 44923 4 Skin 0.01 protein_coding synonymous_variant LOW 453C>T Asn151Asn
M0017422 JDIHGPPD_00047 44934 4 Skin 0.01 protein_coding synonymous_variant LOW 442C>T Leu148Leu
M0017423 JDIHGPPD_00056 52556 8 Skin 0.03 protein_coding missense_variant MODERATE 860G>A Gly287Asp
M0017424 JDIHGPPD_00056 52645 5 Skin 0.02 protein_coding synonymous_variant LOW 771T>C Ala257Ala
M0017425 JDIHGPPD_00056 52690 10 Skin 0.04 protein_coding synonymous_variant LOW 726T>C Ser242Ser
M0017426 JDIHGPPD_00059 56492 4 Skin 0.01 protein_coding synonymous_variant LOW 237G>C Pro79Pro
M0017427 JDIHGPPD_00059 57245 3 Skin 0.01 protein_coding synonymous_variant LOW 990T>A Ala330Ala
M0017428 JDIHGPPD_00069 66539 3 Skin 0.01 protein_coding missense_variant MODERATE 619C>A Gln207Lys
M0017429 JDIHGPPD_00056 52975 3 Skin 0.01 protein_coding synonymous_variant LOW 441G>T Arg147Arg
M0017430 JDIHGPPD_00057 53704 3 Skin 0.01 protein_coding synonymous_variant LOW 174C>T Ala58Ala
M0017431 JDIHGPPD_00058 55453 7 Skin 0.03 protein_coding missense_variant MODERATE 877A>G Met293Val
M0017432 JDIHGPPD_00058 55479 6 Skin 0.02 protein_coding synonymous_variant LOW 903T>C Cys301Cys
M0017433 JDIHGPPD_00056 53290 3 Skin 0.01 protein_coding synonymous_variant LOW 126T>G Gly42Gly
M0017434 JDIHGPPD_00047 44845 3 Skin 0.01 protein_coding synonymous_variant LOW 531A>G Ala177Ala
M0017435 JDIHGPPD_00047 45061 4 Skin 0.01 protein_coding synonymous_variant LOW 315G>A Val105Val
M0017436 JDIHGPPD_00047 45069 4 Skin 0.01 protein_coding missense_variant MODERATE 307A>G Met103Val
M0017437 JDIHGPPD_00047 45070 4 Skin 0.01 protein_coding synonymous_variant LOW 306G>A Ala102Ala
M0017438 JDIHGPPD_00053 49798 3 Skin 0.01 protein_coding missense_variant MODERATE 97A>G Met33Val
M0017439 JDIHGPPD_00053 49832 3 Skin 0.01 protein_coding synonymous_variant LOW 63A>G Lys21Lys
M0017440 JDIHGPPD_00056 52879 3 Skin 0.01 protein_coding synonymous_variant LOW 537C>G Pro179Pro
M0017441 JDIHGPPD_00056 52882 3 Skin 0.01 protein_coding synonymous_variant LOW 534T>C Gly178Gly
M0017442 JDIHGPPD_00056 52897 3 Skin 0.01 protein_coding synonymous_variant LOW 519T>G Leu173Leu
M0017443 JDIHGPPD_00056 53023 3 Skin 0.01 protein_coding synonymous_variant LOW 393G>C Ala131Ala
M0017444 JDIHGPPD_00056 53038 3 Skin 0.01 protein_coding synonymous_variant LOW 378T>G Gly126Gly
M0017445 JDIHGPPD_00068 65743 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -123C>T None
M0017446 JDIHGPPD_00072 68395 4 Skin 0.01 protein_coding synonymous_variant LOW 361T>C Leu121Leu
M0017447 JDIHGPPD_00072 68418 4 Skin 0.01 protein_coding synonymous_variant LOW 384T>G Pro128Pro
M0017448 JDIHGPPD_00072 68604 7 Skin 0.03 protein_coding synonymous_variant LOW 570A>G Lys190Lys
M0017449 JDIHGPPD_00072 68607 7 Skin 0.03 protein_coding synonymous_variant LOW 573A>G Ala191Ala
M0017450 JDIHGPPD_00076 73528 3 Skin 0.01 protein_coding synonymous_variant LOW 147G>A Ala49Ala
M0017451 JDIHGPPD_00076 73536 3 Skin 0.01 protein_coding missense_variant MODERATE 139C>T Arg47Cys
M0017452 JDIHGPPD_00076 73540 3 Skin 0.01 protein_coding synonymous_variant LOW 135T>C Arg45Arg
M0017453 JDIHGPPD_00058 54620 3 Skin 0.01 protein_coding missense_variant MODERATE 44C>G Pro15Arg
M0017454 JDIHGPPD_00058 54660 4 Skin 0.01 protein_coding synonymous_variant LOW 84T>C Arg28Arg
M0017455 JDIHGPPD_00058 54662 4 Skin 0.01 protein_coding missense_variant MODERATE 86C>G Thr29Ser
M0017456 JDIHGPPD_00058 54671 4 Skin 0.01 protein_coding missense_variant MODERATE 95C>G Pro32Arg
M0017457 JDIHGPPD_00058 54711 4 Skin 0.01 protein_coding synonymous_variant LOW 135T>C Val45Val
M0017458 JDIHGPPD_00059 56615 5 Skin 0.02 protein_coding synonymous_variant LOW 360G>A Glu120Glu
M0017459 JDIHGPPD_00066 63733 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -1257T>C None
M0017460 JDIHGPPD_00068 65696 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -76G>A None
M0017461 JDIHGPPD_00050 46542 3 Skin 0.01 protein_coding missense_variant MODERATE 140A>G Asn47Ser
M0017462 JDIHGPPD_00050 46562 3 Skin 0.01 protein_coding synonymous_variant LOW 120G>A Ala40Ala
M0017463 JDIHGPPD_00050 46580 3 Skin 0.01 protein_coding synonymous_variant LOW 102T>C Asn34Asn
M0017464 JDIHGPPD_00032 32535 3 Skin 0.01 protein_coding synonymous_variant LOW 342C>G Gly114Gly
M0017465 JDIHGPPD_00042 45705 4 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4509T>C None
M0017466 JDIHGPPD_00058 55798 4 Skin 0.01 protein_coding synonymous_variant LOW 1222T>C Leu408Leu
M0017467 JDIHGPPD_00040 42673 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -2767C>T None
M0017468 JDIHGPPD_00044 42887 3 Skin 0.01 protein_coding synonymous_variant LOW 696T>C Phe232Phe
M0017469 JDIHGPPD_00044 42920 3 Skin 0.01 protein_coding missense_variant MODERATE 663C>G His221Gln
M0017470 JDIHGPPD_00051 47551 4 Skin 0.01 protein_coding synonymous_variant LOW 720T>C Arg240Arg
M0017471 JDIHGPPD_00052 48628 3 Skin 0.01 protein_coding synonymous_variant LOW 255T>C His85His
M0017472 JDIHGPPD_00074 71478 4 Skin 0.01 protein_coding synonymous_variant LOW 1839C>G Pro613Pro
M0017473 JDIHGPPD_00052 53459 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -4577G>C None
M0017474 JDIHGPPD_00066 64917 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -73T>A None
M0017475 JDIHGPPD_00040 40007 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -101A>T None
M0017476 JDIHGPPD_00052 48175 4 Skin 0.01 protein_coding synonymous_variant LOW 708A>G Gly236Gly
M0017477 JDIHGPPD_00066 65039 6 Skin 0.02 protein_coding missense_variant MODERATE 50G>C Ser17Thr
M0017478 JDIHGPPD_00075 73234 3 Skin 0.01 protein_coding synonymous_variant LOW 1215A>C Val405Val
M0017479 JDIHGPPD_00047 48914 3 Skin 0.01 protein_coding upstream_gene_variant MODIFIER -3539A>C None
M0017480 JDIHGPPD_00061 60062 3 Skin 0.01 protein_coding synonymous_variant LOW 1332C>T Ala444Ala
M0017481 JDIHGPPD_00066 65082 5 Skin 0.02 protein_coding synonymous_variant LOW 93C>T Gly31Gly
M0017482 JDIHGPPD_00054 50131 3 Skin 0.01 protein_coding synonymous_variant LOW 114G>A Val38Val
M0017483 JDIHGPPD_00054 50152 3 Skin 0.01 protein_coding synonymous_variant LOW 135G>T Ser45Ser
M0017484 JDIHGPPD_00054 50155 3 Skin 0.01 protein_coding synonymous_variant LOW 138G>C Ala46Ala
M0017485 JDIHGPPD_00057 54433 3 Skin 0.01 protein_coding synonymous_variant LOW 903T>C Ala301Ala
M0017486 JDIHGPPD_00058 55158 6 Skin 0.02 protein_coding synonymous_variant LOW 582C>G Ala194Ala
M0017487 JDIHGPPD_00061 59879 5 Skin 0.02 protein_coding synonymous_variant LOW 1149C>G Val383Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
JDIHGPPD_00003 PHI:124344 ihfA 85.7 2e-38 3 93 0.9100 0.9192 primates pneumonia integration host factor reduced virulence
JDIHGPPD_00068 PHI:10387 SEN1538 71.7 1.8e-14 10 69 0.8696 0.9167 rodents salmonellosis conserved hypothetical protein reduced virulence
JDIHGPPD_00071 PHI:10946 PA2146 75.4 1.2e-13 32 87 0.4786 0.9818 rodents nosocomial infection conserved hypothetical protein increased virulence (hypervirulence)
JDIHGPPD_00072 PHI:11382 katN 71.5 6.5e-114 1 284 0.9759 0.9726 moths salmonellosis catalase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term