Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1835
  Reference Plasmid   1111525849663039_bin.26__k141_201966
  Reference Plasmid Size   47729
  Reference Plasmid GC Content   0.53
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0018137 HHIGOBCJ_00011 12592 12 Skin 0.13 protein_coding synonymous_variant LOW 816C>T Ala272Ala
M0018138 HHIGOBCJ_00011 12860 12 Skin 0.13 protein_coding missense_variant MODERATE 548G>A Arg183His
M0018139 HHIGOBCJ_00011 13295 10 Skin 0.11 protein_coding missense_variant MODERATE 113A>C Glu38Ala
M0018140 HHIGOBCJ_00011 13297 10 Skin 0.11 protein_coding synonymous_variant LOW 111G>T Pro37Pro
M0018141 HHIGOBCJ_00011 13325 12 Skin 0.13 protein_coding missense_variant MODERATE 83T>C Val28Ala
M0018142 HHIGOBCJ_00011 12640 14 Skin 0.15 protein_coding synonymous_variant LOW 768G>A Pro256Pro
M0018143 HHIGOBCJ_00008 14010 7 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -2859T>C None
M0018144 HHIGOBCJ_00001 588 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1230C>T None
M0018145 HHIGOBCJ_00001 608 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1210G>A None
M0018146 HHIGOBCJ_00001 2495 3 Skin 0.03 protein_coding synonymous_variant LOW 678T>C Thr226Thr
M0018147 HHIGOBCJ_00001 2630 9 Skin 0.10 protein_coding synonymous_variant LOW 813A>G Arg271Arg
M0018148 HHIGOBCJ_00001 3047 13 Skin 0.14 protein_coding synonymous_variant LOW 1230G>T Gly410Gly
M0018149 HHIGOBCJ_00001 3715 9 Skin 0.10 protein_coding missense_variant MODERATE 1898G>A Arg633His
M0018150 HHIGOBCJ_00001 3740 11 Skin 0.12 protein_coding synonymous_variant LOW 1923A>G Gln641Gln
M0018151 HHIGOBCJ_00003 5086 6 Skin 0.07 protein_coding synonymous_variant LOW 675A>T Val225Val
M0018152 HHIGOBCJ_00003 5095 6 Skin 0.07 protein_coding synonymous_variant LOW 666A>G Val222Val
M0018153 HHIGOBCJ_00003 5125 3 Skin 0.03 protein_coding synonymous_variant LOW 636C>T Asp212Asp
M0018154 HHIGOBCJ_00003 5323 7 Skin 0.08 protein_coding synonymous_variant LOW 438T>C Pro146Pro
M0018155 HHIGOBCJ_00003 5608 5 Skin 0.05 protein_coding synonymous_variant LOW 153G>A Glu51Glu
M0018156 HHIGOBCJ_00003 5722 7 Skin 0.08 protein_coding missense_variant MODERATE 39T>A Asp13Glu
M0018157 HHIGOBCJ_00004 5939 10 Skin 0.11 protein_coding synonymous_variant LOW 1467A>G Gln489Gln
M0018158 HHIGOBCJ_00004 5954 10 Skin 0.11 protein_coding synonymous_variant LOW 1452C>T Arg484Arg
M0018159 HHIGOBCJ_00004 6515 7 Skin 0.08 protein_coding synonymous_variant LOW 891G>A Lys297Lys
M0018160 HHIGOBCJ_00004 6989 7 Skin 0.08 protein_coding synonymous_variant LOW 417A>G Pro139Pro
M0018161 HHIGOBCJ_00005 8273 6 Skin 0.07 protein_coding synonymous_variant LOW 306C>T Phe102Phe
M0018162 HHIGOBCJ_00005 8655 11 Skin 0.12 protein_coding stop_lost&splice_region_variant HIGH 688T>C Ter230Glnext*?
M0018163 HHIGOBCJ_00006 8993 12 Skin 0.13 protein_coding synonymous_variant LOW 240A>G Ala80Ala
M0018164 HHIGOBCJ_00006 9005 12 Skin 0.13 protein_coding synonymous_variant LOW 252G>A Gln84Gln
M0018165 HHIGOBCJ_00006 9008 12 Skin 0.13 protein_coding synonymous_variant LOW 255T>C Ala85Ala
M0018166 HHIGOBCJ_00006 9011 10 Skin 0.11 protein_coding synonymous_variant LOW 258C>T Thr86Thr
M0018167 HHIGOBCJ_00006 9032 12 Skin 0.13 protein_coding synonymous_variant LOW 279T>C Gly93Gly
M0018168 HHIGOBCJ_00006 9140 8 Skin 0.09 protein_coding synonymous_variant LOW 387A>C Ala129Ala
M0018169 HHIGOBCJ_00006 9206 7 Skin 0.08 protein_coding synonymous_variant LOW 453T>C Pro151Pro
M0018170 HHIGOBCJ_00003 9402 11 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3642G>T None
M0018171 HHIGOBCJ_00007 9516 5 Skin 0.05 protein_coding synonymous_variant LOW 75A>G Ala25Ala
M0018172 HHIGOBCJ_00007 9703 13 Skin 0.14 protein_coding missense_variant MODERATE 262A>G Thr88Ala
M0018173 HHIGOBCJ_00007 9750 11 Skin 0.12 protein_coding synonymous_variant LOW 309A>G Val103Val
M0018174 HHIGOBCJ_00009 11345 8 Skin 0.09 protein_coding synonymous_variant LOW 471G>A Lys157Lys
M0018175 HHIGOBCJ_00011 12666 11 Skin 0.12 protein_coding missense_variant MODERATE 742C>A Gln248Lys
M0018176 HHIGOBCJ_00008 14082 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2931A>G None
M0018177 HHIGOBCJ_00013 15101 12 Skin 0.13 protein_coding synonymous_variant LOW 486T>A Pro162Pro
M0018178 HHIGOBCJ_00014 15266 7 Skin 0.08 protein_coding missense_variant MODERATE 34A>G Thr12Ala
M0018179 HHIGOBCJ_00009 11755 6 Skin 0.07 protein_coding missense_variant MODERATE 61T>G Phe21Val
M0018180 HHIGOBCJ_00011 12997 4 Skin 0.04 protein_coding missense_variant MODERATE 411G>T Glu137Asp
M0018181 HHIGOBCJ_00011 13032 4 Skin 0.04 protein_coding synonymous_variant LOW 376C>T Leu126Leu
M0018182 HHIGOBCJ_00008 15792 17 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4641A>T None
M0018183 HHIGOBCJ_00008 15799 17 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4648C>T None
M0018184 HHIGOBCJ_00015 16700 3 Skin 0.03 protein_coding synonymous_variant LOW 819T>C Arg273Arg
M0018185 HHIGOBCJ_00015 16889 7 Skin 0.08 protein_coding synonymous_variant LOW 1008T>C Asp336Asp
M0018186 HHIGOBCJ_00015 18168 4 Skin 0.04 protein_coding missense_variant MODERATE 2287G>C Ala763Pro
M0018187 HHIGOBCJ_00015 18179 6 Skin 0.07 protein_coding synonymous_variant LOW 2298T>C Ser766Ser
M0018188 HHIGOBCJ_00015 18258 13 Skin 0.14 protein_coding synonymous_variant LOW 2377T>C Leu793Leu
M0018189 HHIGOBCJ_00017 19457 10 Skin 0.11 protein_coding synonymous_variant LOW 288T>A Ala96Ala
M0018190 HHIGOBCJ_00017 19499 10 Skin 0.11 protein_coding synonymous_variant LOW 330A>G Gly110Gly
M0018191 HHIGOBCJ_00017 19526 11 Skin 0.12 protein_coding synonymous_variant LOW 357A>G Ala119Ala
M0018192 HHIGOBCJ_00017 19585 8 Skin 0.09 protein_coding missense_variant MODERATE 416A>C Asn139Thr
M0018193 HHIGOBCJ_00001 936 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -882G>A None
M0018194 HHIGOBCJ_00001 3437 10 Skin 0.11 protein_coding synonymous_variant LOW 1620A>G Leu540Leu
M0018195 HHIGOBCJ_00004 6329 6 Skin 0.07 protein_coding synonymous_variant LOW 1077G>T Val359Val
M0018196 HHIGOBCJ_00004 6333 6 Skin 0.07 protein_coding missense_variant MODERATE 1073G>A Arg358Gln
M0018197 HHIGOBCJ_00004 6339 6 Skin 0.07 protein_coding missense_variant MODERATE 1067A>G Asn356Ser
M0018198 HHIGOBCJ_00004 7043 7 Skin 0.08 protein_coding synonymous_variant LOW 363C>T Gly121Gly
M0018199 HHIGOBCJ_00005 8180 5 Skin 0.05 protein_coding synonymous_variant LOW 213A>G Pro71Pro
M0018200 HHIGOBCJ_00001 489 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -1329C>T None
M0018201 HHIGOBCJ_00001 1083 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -735A>G None
M0018202 HHIGOBCJ_00001 2216 8 Skin 0.09 protein_coding synonymous_variant LOW 399T>A Ser133Ser
M0018203 HHIGOBCJ_00001 2231 8 Skin 0.09 protein_coding synonymous_variant LOW 414G>T Ala138Ala
M0018204 HHIGOBCJ_00002 3866 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -78A>G None
M0018205 HHIGOBCJ_00002 3886 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -58A>T None
M0018206 HHIGOBCJ_00002 3896 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -48T>C None
M0018207 HHIGOBCJ_00002 3926 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -18A>C None
M0018208 HHIGOBCJ_00005 4821 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3147T>C None
M0018209 HHIGOBCJ_00005 4878 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -3090C>T None
M0018210 HHIGOBCJ_00004 6614 4 Skin 0.04 protein_coding synonymous_variant LOW 792G>A Ala264Ala
M0018211 HHIGOBCJ_00003 7609 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1849C>T None
M0018212 HHIGOBCJ_00005 8040 4 Skin 0.04 protein_coding synonymous_variant LOW 73C>T Leu25Leu
M0018213 HHIGOBCJ_00005 8042 4 Skin 0.04 protein_coding synonymous_variant LOW 75G>A Leu25Leu
M0018214 HHIGOBCJ_00005 8609 3 Skin 0.03 protein_coding synonymous_variant LOW 642G>A Ala214Ala
M0018215 HHIGOBCJ_00003 4966 3 Skin 0.03 protein_coding synonymous_variant LOW 795C>T Asn265Asn
M0018216 HHIGOBCJ_00003 4969 3 Skin 0.03 protein_coding synonymous_variant LOW 792T>C Ile264Ile
M0018217 HHIGOBCJ_00020 21822 10 Skin 0.11 protein_coding synonymous_variant LOW 438G>T Pro146Pro
M0018218 HHIGOBCJ_00020 22048 8 Skin 0.09 protein_coding missense_variant MODERATE 664C>A Leu222Ile
M0018219 HHIGOBCJ_00020 22059 8 Skin 0.09 protein_coding synonymous_variant LOW 675G>A Ser225Ser
M0018220 HHIGOBCJ_00020 22104 10 Skin 0.11 protein_coding synonymous_variant LOW 720C>A Ala240Ala
M0018221 HHIGOBCJ_00020 22139 9 Skin 0.10 protein_coding missense_variant MODERATE 755C>T Ala252Val
M0018222 HHIGOBCJ_00020 22143 9 Skin 0.10 protein_coding synonymous_variant LOW 759T>C Ala253Ala
M0018223 HHIGOBCJ_00020 22230 7 Skin 0.08 protein_coding synonymous_variant LOW 846A>G Glu282Glu
M0018224 HHIGOBCJ_00020 22251 7 Skin 0.08 protein_coding synonymous_variant LOW 867A>G Glu289Glu
M0018225 HHIGOBCJ_00020 22383 8 Skin 0.09 protein_coding synonymous_variant LOW 999T>C Val333Val
M0018226 HHIGOBCJ_00020 22407 8 Skin 0.09 protein_coding synonymous_variant LOW 1023T>C Gly341Gly
M0018227 HHIGOBCJ_00020 22457 5 Skin 0.05 protein_coding missense_variant MODERATE 1073A>G His358Arg
M0018228 HHIGOBCJ_00020 22841 19 Skin 0.21 protein_coding missense_variant MODERATE 1457T>C Met486Thr
M0018229 HHIGOBCJ_00021 23408 14 Skin 0.15 protein_coding synonymous_variant LOW 387C>T Ser129Ser
M0018230 HHIGOBCJ_00021 23429 14 Skin 0.15 protein_coding synonymous_variant LOW 408G>A Gln136Gln
M0018231 HHIGOBCJ_00021 23632 14 Skin 0.15 protein_coding splice_region_variant&stop_retained_variant LOW 611G>A Ter204Ter
M0018232 HHIGOBCJ_00023 23637 14 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -1071C>T None
M0018233 HHIGOBCJ_00022 24267 16 Skin 0.17 protein_coding synonymous_variant LOW 306C>T Arg102Arg
M0018234 HHIGOBCJ_00022 24285 15 Skin 0.16 protein_coding synonymous_variant LOW 288T>C Asn96Asn
M0018235 HHIGOBCJ_00023 25073 8 Skin 0.09 protein_coding synonymous_variant LOW 366C>T Arg122Arg
M0018236 HHIGOBCJ_00023 25090 8 Skin 0.09 protein_coding missense_variant MODERATE 383A>G Asn128Ser
M0018237 HHIGOBCJ_00025 25499 4 Skin 0.04 protein_coding synonymous_variant LOW 291C>G Thr97Thr
M0018238 HHIGOBCJ_00025 25514 5 Skin 0.05 protein_coding synonymous_variant LOW 276A>C Ala92Ala
M0018239 HHIGOBCJ_00025 25580 5 Skin 0.05 protein_coding synonymous_variant LOW 210G>A Gly70Gly
M0018240 HHIGOBCJ_00025 25595 5 Skin 0.05 protein_coding missense_variant MODERATE 195G>T Met65Ile
M0018241 HHIGOBCJ_00025 25601 5 Skin 0.05 protein_coding synonymous_variant LOW 189C>T Ser63Ser
M0018242 HHIGOBCJ_00025 25640 5 Skin 0.05 protein_coding synonymous_variant LOW 150A>G Ala50Ala
M0018243 HHIGOBCJ_00026 26077 16 Skin 0.17 protein_coding missense_variant MODERATE 51G>T Met17Ile
M0018244 HHIGOBCJ_00026 26083 16 Skin 0.17 protein_coding synonymous_variant LOW 45T>C Ile15Ile
M0018245 HHIGOBCJ_00027 26570 8 Skin 0.09 protein_coding synonymous_variant LOW 90T>C Thr30Thr
M0018246 HHIGOBCJ_00027 26777 7 Skin 0.08 protein_coding synonymous_variant LOW 297A>G Glu99Glu
M0018247 HHIGOBCJ_00027 26813 7 Skin 0.08 protein_coding synonymous_variant LOW 333C>T Ile111Ile
M0018248 HHIGOBCJ_00004 11896 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4491T>C None
M0018249 HHIGOBCJ_00013 14645 3 Skin 0.03 protein_coding synonymous_variant LOW 30T>C Thr10Thr
M0018250 HHIGOBCJ_00013 14663 3 Skin 0.03 protein_coding synonymous_variant LOW 48C>T Ser16Ser
M0018251 HHIGOBCJ_00008 15806 14 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -4655T>A None
M0018252 HHIGOBCJ_00015 17330 6 Skin 0.07 protein_coding synonymous_variant LOW 1449C>T Asp483Asp
M0018253 HHIGOBCJ_00002 3758 10 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -186G>T None
M0018254 HHIGOBCJ_00004 6116 4 Skin 0.04 protein_coding synonymous_variant LOW 1290A>G Val430Val
M0018255 HHIGOBCJ_00003 7696 5 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -1936G>A None
M0018256 HHIGOBCJ_00018 20434 13 Skin 0.14 protein_coding synonymous_variant LOW 636G>A Gln212Gln
M0018257 HHIGOBCJ_00019 21027 11 Skin 0.12 protein_coding synonymous_variant LOW 207C>T His69His
M0018258 HHIGOBCJ_00019 21087 8 Skin 0.09 protein_coding synonymous_variant LOW 267A>G Ser89Ser
M0018259 HHIGOBCJ_00019 21244 12 Skin 0.13 protein_coding missense_variant MODERATE 424T>G Ser142Ala
M0018260 HHIGOBCJ_00020 21637 14 Skin 0.15 protein_coding missense_variant MODERATE 253A>C Lys85Gln
M0018261 HHIGOBCJ_00020 21913 8 Skin 0.09 protein_coding synonymous_variant LOW 529T>C Leu177Leu
M0018262 HHIGOBCJ_00020 22623 15 Skin 0.16 protein_coding synonymous_variant LOW 1239G>A Gln413Gln
M0018263 HHIGOBCJ_00020 22629 15 Skin 0.16 protein_coding synonymous_variant LOW 1245A>G Pro415Pro
M0018264 HHIGOBCJ_00020 22632 15 Skin 0.16 protein_coding synonymous_variant LOW 1248C>G Leu416Leu
M0018265 HHIGOBCJ_00020 22639 15 Skin 0.16 protein_coding missense_variant MODERATE 1255A>G Thr419Ala
M0018266 HHIGOBCJ_00020 22660 15 Skin 0.16 protein_coding missense_variant MODERATE 1276T>G Leu426Val
M0018267 HHIGOBCJ_00020 22713 17 Skin 0.18 protein_coding synonymous_variant LOW 1329A>C Ala443Ala
M0018268 HHIGOBCJ_00020 22731 17 Skin 0.18 protein_coding synonymous_variant LOW 1347G>A Leu449Leu
M0018269 HHIGOBCJ_00021 23111 4 Skin 0.04 protein_coding synonymous_variant LOW 90C>G Leu30Leu
M0018270 HHIGOBCJ_00023 24758 9 Skin 0.10 protein_coding synonymous_variant LOW 51C>T Arg17Arg
M0018271 HHIGOBCJ_00016 19035 7 Skin 0.08 protein_coding synonymous_variant LOW 633G>A Lys211Lys
M0018272 HHIGOBCJ_00018 20365 6 Skin 0.07 protein_coding synonymous_variant LOW 567G>A Pro189Pro
M0018273 HHIGOBCJ_00020 21383 11 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0018274 HHIGOBCJ_00020 21397 11 Skin 0.12 protein_coding missense_variant MODERATE 13C>T Pro5Ser
M0018275 HHIGOBCJ_00020 21412 11 Skin 0.12 protein_coding synonymous_variant LOW 28C>T Leu10Leu
M0018276 HHIGOBCJ_00020 21962 7 Skin 0.08 protein_coding missense_variant MODERATE 578A>G His193Arg
M0018277 HHIGOBCJ_00020 21963 7 Skin 0.08 protein_coding synonymous_variant LOW 579T>C His193His
M0018278 HHIGOBCJ_00020 22006 11 Skin 0.12 protein_coding synonymous_variant LOW 622C>T Leu208Leu
M0018279 HHIGOBCJ_00034 35903 4 Skin 0.04 protein_coding missense_variant MODERATE 671A>G Glu224Gly
M0018280 HHIGOBCJ_00021 23255 9 Skin 0.10 protein_coding synonymous_variant LOW 234G>A Val78Val
M0018281 HHIGOBCJ_00022 24127 7 Skin 0.08 protein_coding missense_variant MODERATE 446C>T Ala149Val
M0018282 HHIGOBCJ_00024 25343 7 Skin 0.08 protein_coding synonymous_variant LOW 120C>T Cys40Cys
M0018283 HHIGOBCJ_00019 20886 10 Skin 0.11 protein_coding synonymous_variant LOW 66G>A Leu22Leu
M0018284 HHIGOBCJ_00011 12943 4 Skin 0.04 protein_coding synonymous_variant LOW 465G>T Ser155Ser
M0018285 HHIGOBCJ_00001 3124 3 Skin 0.03 protein_coding missense_variant MODERATE 1307G>C Gly436Ala
M0018286 HHIGOBCJ_00001 1041 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -777G>A None
M0018287 HHIGOBCJ_00001 1059 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -759A>G None
M0018288 HHIGOBCJ_00001 1065 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -753C>A None
M0018289 HHIGOBCJ_00001 1068 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -750G>C None
M0018290 HHIGOBCJ_00001 1115 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -703G>A None
M0018291 HHIGOBCJ_00001 1155 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -663A>T None
M0018292 HHIGOBCJ_00001 1185 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -633G>A None
M0018293 HHIGOBCJ_00001 1209 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -609A>G None
M0018294 HHIGOBCJ_00001 1212 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -606G>A None
M0018295 HHIGOBCJ_00007 9837 5 Skin 0.05 protein_coding synonymous_variant LOW 396G>A Ala132Ala
M0018296 HHIGOBCJ_00007 9879 4 Skin 0.04 protein_coding synonymous_variant LOW 438C>T Pro146Pro
M0018297 HHIGOBCJ_00014 15319 4 Skin 0.04 protein_coding synonymous_variant LOW 87G>A Thr29Thr
M0018298 HHIGOBCJ_00022 24591 10 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -19G>A None
M0018299 HHIGOBCJ_00015 16817 7 Skin 0.08 protein_coding synonymous_variant LOW 936A>C Ala312Ala
M0018300 HHIGOBCJ_00015 17672 3 Skin 0.03 protein_coding synonymous_variant LOW 1791A>G Ala597Ala
M0018301 HHIGOBCJ_00015 16940 3 Skin 0.03 protein_coding synonymous_variant LOW 1059G>T Thr353Thr
M0018302 HHIGOBCJ_00022 24691 12 Skin 0.13 protein_coding upstream_gene_variant MODIFIER -119A>G None
M0018303 HHIGOBCJ_00019 21135 5 Skin 0.05 protein_coding synonymous_variant LOW 315G>A Lys105Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
HHIGOBCJ_00008 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 81.7 3.9e-111 1 257 1.0000 0.9923 experiment
HHIGOBCJ_00008 Iron (Fe), Hydrogen Peroxide (H2O2) [class: Peroxides] 97.3 5e-128 1 257 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
HHIGOBCJ_00008 3.A.1.139.2 81.7 1.5e-109 1 257 1.0000 0.9923 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily