Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1849
  Reference Plasmid   1111525849663500_bin.1_new__k141_377012
  Reference Plasmid Size   12905
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0018732 MNFGGPLD_00004 2933 13 Skin 0.25 protein_coding missense_variant MODERATE 218A>C Asp73Ala
M0018733 MNFGGPLD_00007 4625 20 Skin 0.39 protein_coding synonymous_variant LOW 723G>A Gln241Gln
M0018734 MNFGGPLD_00007 4643 20 Skin 0.39 protein_coding synonymous_variant LOW 705C>G Ala235Ala
M0018735 MNFGGPLD_00007 4670 25 Skin 0.49 protein_coding synonymous_variant LOW 678A>G Gly226Gly
M0018736 MNFGGPLD_00007 4673 21 Skin 0.41 protein_coding synonymous_variant LOW 675C>A Ala225Ala
M0018737 MNFGGPLD_00007 4787 18 Skin 0.35 protein_coding synonymous_variant LOW 561C>T Ser187Ser
M0018738 MNFGGPLD_00007 5278 26 Skin 0.51 protein_coding synonymous_variant LOW 70T>C Leu24Leu
M0018739 MNFGGPLD_00007 5281 26 Skin 0.51 protein_coding missense_variant MODERATE 67G>A Ala23Thr
M0018740 MNFGGPLD_00003 5352 45 Skin 0.88 protein_coding upstream_gene_variant MODIFIER -3279C>T None
M0018741 MNFGGPLD_00008 5672 8 Skin 0.16 protein_coding synonymous_variant LOW 231G>C Ala77Ala
M0018742 MNFGGPLD_00008 5714 19 Skin 0.37 protein_coding synonymous_variant LOW 273C>G Ala91Ala
M0018743 MNFGGPLD_00008 5870 18 Skin 0.35 protein_coding synonymous_variant LOW 429A>G Ala143Ala
M0018744 MNFGGPLD_00008 5879 19 Skin 0.37 protein_coding synonymous_variant LOW 438G>T Pro146Pro
M0018745 MNFGGPLD_00003 5906 18 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -3833C>T None
M0018746 MNFGGPLD_00003 5929 22 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3856A>G None
M0018747 MNFGGPLD_00003 6473 27 Skin 0.53 protein_coding upstream_gene_variant MODIFIER -4400G>A None
M0018748 MNFGGPLD_00003 6500 29 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -4427G>T None
M0018749 MNFGGPLD_00010 6676 30 Skin 0.59 protein_coding missense_variant MODERATE 247G>A Asp83Asn
M0018750 MNFGGPLD_00010 6686 31 Skin 0.61 protein_coding synonymous_variant LOW 237C>T Phe79Phe
M0018751 MNFGGPLD_00012 7784 14 Skin 0.27 protein_coding synonymous_variant LOW 879T>C Phe293Phe
M0018752 MNFGGPLD_00012 7850 20 Skin 0.39 protein_coding synonymous_variant LOW 813T>C His271His
M0018753 MNFGGPLD_00012 8120 4 Skin 0.08 protein_coding missense_variant MODERATE 543A>C Glu181Asp
M0018754 MNFGGPLD_00012 8288 12 Skin 0.24 protein_coding synonymous_variant LOW 375G>C Thr125Thr
M0018755 MNFGGPLD_00012 8299 13 Skin 0.25 protein_coding missense_variant MODERATE 364A>G Ser122Gly
M0018756 MNFGGPLD_00012 8315 10 Skin 0.20 protein_coding synonymous_variant LOW 348C>T Gly116Gly
M0018757 MNFGGPLD_00012 8420 12 Skin 0.24 protein_coding synonymous_variant LOW 243A>G Thr81Thr
M0018758 MNFGGPLD_00012 8550 20 Skin 0.39 protein_coding missense_variant MODERATE 113T>C Val38Ala
M0018759 MNFGGPLD_00005 8696 13 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -4815A>G None
M0018760 MNFGGPLD_00013 9177 9 Skin 0.18 protein_coding missense_variant MODERATE 122T>C Met41Thr
M0018761 MNFGGPLD_00014 10378 10 Skin 0.20 protein_coding missense_variant MODERATE 503A>G Asp168Gly
M0018762 MNFGGPLD_00014 10591 6 Skin 0.12 protein_coding missense_variant MODERATE 716T>A Phe239Tyr
M0018763 MNFGGPLD_00014 10649 6 Skin 0.12 protein_coding synonymous_variant LOW 774C>T Asp258Asp
M0018764 MNFGGPLD_00014 10670 6 Skin 0.12 protein_coding synonymous_variant LOW 795C>T His265His
M0018765 MNFGGPLD_00014 10673 6 Skin 0.12 protein_coding synonymous_variant LOW 798G>A Arg266Arg
M0018766 MNFGGPLD_00015 10891 15 Skin 0.29 protein_coding synonymous_variant LOW 9T>G Thr3Thr
M0018767 MNFGGPLD_00016 11355 6 Skin 0.12 protein_coding synonymous_variant LOW 60T>C Thr20Thr
M0018768 MNFGGPLD_00016 11907 8 Skin 0.16 protein_coding synonymous_variant LOW 612A>G Lys204Lys
M0018769 MNFGGPLD_00016 12204 8 Skin 0.16 protein_coding synonymous_variant LOW 909G>T Ala303Ala
M0018770 MNFGGPLD_00017 12470 8 Skin 0.16 protein_coding synonymous_variant LOW 72A>G Val24Val
M0018771 MNFGGPLD_00017 12483 8 Skin 0.16 protein_coding missense_variant MODERATE 59T>C Leu20Pro
M0018772 MNFGGPLD_00017 12521 8 Skin 0.16 protein_coding synonymous_variant LOW 21A>G Leu7Leu
M0018773 MNFGGPLD_00012 12551 7 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3889G>A None
M0018774 MNFGGPLD_00018 12806 3 Skin 0.06 protein_coding synonymous_variant LOW 93G>A Leu31Leu
M0018775 MNFGGPLD_00003 1609 6 Skin 0.12 protein_coding synonymous_variant LOW 465C>T His155His
M0018776 MNFGGPLD_00003 1648 6 Skin 0.12 protein_coding synonymous_variant LOW 426C>T Gly142Gly
M0018777 MNFGGPLD_00003 1675 8 Skin 0.16 protein_coding synonymous_variant LOW 399G>T Gly133Gly
M0018778 MNFGGPLD_00003 1837 8 Skin 0.16 protein_coding synonymous_variant LOW 237A>T Gly79Gly
M0018779 MNFGGPLD_00003 1846 8 Skin 0.16 protein_coding synonymous_variant LOW 228C>T Phe76Phe
M0018780 MNFGGPLD_00003 1852 7 Skin 0.14 protein_coding synonymous_variant LOW 222C>A Ala74Ala
M0018781 MNFGGPLD_00003 1861 8 Skin 0.16 protein_coding synonymous_variant LOW 213A>T Gly71Gly
M0018782 MNFGGPLD_00003 1891 8 Skin 0.16 protein_coding synonymous_variant LOW 183G>A Gln61Gln
M0018783 MNFGGPLD_00003 1936 14 Skin 0.27 protein_coding synonymous_variant LOW 138G>C Thr46Thr
M0018784 MNFGGPLD_00003 1939 14 Skin 0.27 protein_coding synonymous_variant LOW 135A>C Ala45Ala
M0018785 MNFGGPLD_00003 1957 14 Skin 0.27 protein_coding synonymous_variant LOW 117G>A Ala39Ala
M0018786 MNFGGPLD_00003 2002 10 Skin 0.20 protein_coding synonymous_variant LOW 72G>A Ser24Ser
M0018787 MNFGGPLD_00003 2005 10 Skin 0.20 protein_coding synonymous_variant LOW 69T>C Cys23Cys
M0018788 MNFGGPLD_00003 2016 10 Skin 0.20 protein_coding missense_variant MODERATE 58T>C Phe20Leu
M0018789 MNFGGPLD_00003 2068 12 Skin 0.24 protein_coding synonymous_variant LOW 6T>C His2His
M0018790 MNFGGPLD_00003 2075 13 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -2T>C None
M0018791 MNFGGPLD_00003 2142 13 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -69C>A None
M0018792 MNFGGPLD_00003 2146 14 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -73C>A None
M0018793 MNFGGPLD_00004 2824 9 Skin 0.18 protein_coding synonymous_variant LOW 327G>A Arg109Arg
M0018794 MNFGGPLD_00004 2827 9 Skin 0.18 protein_coding synonymous_variant LOW 324C>G Val108Val
M0018795 MNFGGPLD_00004 2839 10 Skin 0.20 protein_coding synonymous_variant LOW 312T>C Ala104Ala
M0018796 MNFGGPLD_00004 2843 11 Skin 0.22 protein_coding missense_variant MODERATE 308G>C Gly103Ala
M0018797 MNFGGPLD_00004 2878 11 Skin 0.22 protein_coding synonymous_variant LOW 273A>G Gln91Gln
M0018798 MNFGGPLD_00004 2938 12 Skin 0.24 protein_coding missense_variant MODERATE 213C>A Asp71Glu
M0018799 MNFGGPLD_00004 3136 12 Skin 0.24 protein_coding synonymous_variant LOW 15C>T Arg5Arg
M0018800 MNFGGPLD_00007 4913 20 Skin 0.39 protein_coding synonymous_variant LOW 435C>G Ala145Ala
M0018801 MNFGGPLD_00007 4916 20 Skin 0.39 protein_coding synonymous_variant LOW 432G>A Gln144Gln
M0018802 MNFGGPLD_00007 5024 18 Skin 0.35 protein_coding synonymous_variant LOW 324T>C Phe108Phe
M0018803 MNFGGPLD_00007 5032 17 Skin 0.33 protein_coding missense_variant MODERATE 316G>A Ala106Thr
M0018804 MNFGGPLD_00003 6440 18 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -4367A>T None
M0018805 MNFGGPLD_00003 6514 17 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4441G>A None
M0018806 MNFGGPLD_00012 7829 11 Skin 0.22 protein_coding synonymous_variant LOW 834C>T Asp278Asp
M0018807 MNFGGPLD_00007 9430 10 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -4083A>T None
M0018808 MNFGGPLD_00007 9692 11 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4345C>T None
M0018809 MNFGGPLD_00007 9703 12 Skin 0.24 protein_coding upstream_gene_variant MODIFIER -4356C>T None
M0018810 MNFGGPLD_00007 9704 11 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4357G>A None
M0018811 MNFGGPLD_00014 9914 7 Skin 0.14 protein_coding synonymous_variant LOW 39G>A Pro13Pro
M0018812 MNFGGPLD_00014 9947 6 Skin 0.12 protein_coding synonymous_variant LOW 72A>G Gln24Gln
M0018813 MNFGGPLD_00014 9950 6 Skin 0.12 protein_coding synonymous_variant LOW 75T>C Val25Val
M0018814 MNFGGPLD_00014 9983 5 Skin 0.10 protein_coding synonymous_variant LOW 108T>C Ile36Ile
M0018815 MNFGGPLD_00014 10022 3 Skin 0.06 protein_coding missense_variant MODERATE 147A>T Glu49Asp
M0018816 MNFGGPLD_00014 10026 5 Skin 0.10 protein_coding missense_variant MODERATE 151A>G Ile51Val
M0018817 MNFGGPLD_00016 11970 5 Skin 0.10 protein_coding synonymous_variant LOW 675T>C Asp225Asp
M0018818 MNFGGPLD_00016 12010 5 Skin 0.10 protein_coding missense_variant MODERATE 715T>C Tyr239His
M0018819 MNFGGPLD_00016 12297 3 Skin 0.06 protein_coding synonymous_variant LOW 1002C>T Arg334Arg
M0018820 MNFGGPLD_00010 6743 16 Skin 0.31 protein_coding synonymous_variant LOW 180T>C Pro60Pro
M0018821 MNFGGPLD_00002 738 6 Skin 0.12 protein_coding missense_variant MODERATE 244C>T Pro82Ser
M0018822 MNFGGPLD_00002 821 3 Skin 0.06 protein_coding synonymous_variant LOW 327C>G Ser109Ser
M0018823 MNFGGPLD_00002 824 3 Skin 0.06 protein_coding synonymous_variant LOW 330C>T Ser110Ser
M0018824 MNFGGPLD_00002 830 4 Skin 0.08 protein_coding synonymous_variant LOW 336C>G Ala112Ala
M0018825 MNFGGPLD_00002 833 4 Skin 0.08 protein_coding synonymous_variant LOW 339C>T Asn113Asn
M0018826 MNFGGPLD_00002 842 3 Skin 0.06 protein_coding synonymous_variant LOW 348C>T His116His
M0018827 MNFGGPLD_00006 876 4 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3380G>C None
M0018828 MNFGGPLD_00006 883 4 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -3373T>C None
M0018829 MNFGGPLD_00003 916 5 Skin 0.10 protein_coding synonymous_variant LOW 1158G>C Gly386Gly
M0018830 MNFGGPLD_00003 1150 7 Skin 0.14 protein_coding synonymous_variant LOW 924G>T Leu308Leu
M0018831 MNFGGPLD_00003 1273 11 Skin 0.22 protein_coding synonymous_variant LOW 801G>A Gly267Gly
M0018832 MNFGGPLD_00003 1450 10 Skin 0.20 protein_coding synonymous_variant LOW 624C>A Leu208Leu
M0018833 MNFGGPLD_00003 1477 11 Skin 0.22 protein_coding synonymous_variant LOW 597A>G Thr199Thr
M0018834 MNFGGPLD_00003 1511 11 Skin 0.22 protein_coding missense_variant MODERATE 563T>C Val188Ala
M0018835 MNFGGPLD_00003 1516 11 Skin 0.22 protein_coding synonymous_variant LOW 558T>G Leu186Leu
M0018836 MNFGGPLD_00003 1552 11 Skin 0.22 protein_coding synonymous_variant LOW 522T>C Ser174Ser
M0018837 MNFGGPLD_00003 1563 11 Skin 0.22 protein_coding synonymous_variant LOW 511T>C Leu171Leu
M0018838 MNFGGPLD_00004 2206 4 Skin 0.08 protein_coding synonymous_variant LOW 945A>G Lys315Lys
M0018839 MNFGGPLD_00004 2227 4 Skin 0.08 protein_coding synonymous_variant LOW 924C>T Asn308Asn
M0018840 MNFGGPLD_00004 2245 4 Skin 0.08 protein_coding synonymous_variant LOW 906T>C Gly302Gly
M0018841 MNFGGPLD_00004 2251 4 Skin 0.08 protein_coding synonymous_variant LOW 900A>G Leu300Leu
M0018842 MNFGGPLD_00004 2480 6 Skin 0.12 protein_coding missense_variant MODERATE 671G>A Ser224Asn
M0018843 MNFGGPLD_00004 2497 6 Skin 0.12 protein_coding synonymous_variant LOW 654A>G Leu218Leu
M0018844 MNFGGPLD_00004 2563 8 Skin 0.16 protein_coding synonymous_variant LOW 588G>A Ala196Ala
M0018845 MNFGGPLD_00004 2575 8 Skin 0.16 protein_coding synonymous_variant LOW 576G>A Ala192Ala
M0018846 MNFGGPLD_00004 2614 8 Skin 0.16 protein_coding synonymous_variant LOW 537C>T Asp179Asp
M0018847 MNFGGPLD_00004 2641 7 Skin 0.14 protein_coding synonymous_variant LOW 510C>T Ser170Ser
M0018848 MNFGGPLD_00004 2649 7 Skin 0.14 protein_coding synonymous_variant LOW 502C>T Leu168Leu
M0018849 MNFGGPLD_00004 2655 8 Skin 0.16 protein_coding missense_variant MODERATE 496G>T Ala166Ser
M0018850 MNFGGPLD_00004 2984 9 Skin 0.18 protein_coding missense_variant MODERATE 167T>C Val56Ala
M0018851 MNFGGPLD_00004 3037 11 Skin 0.22 protein_coding synonymous_variant LOW 114G>T Gly38Gly
M0018852 MNFGGPLD_00007 5204 12 Skin 0.24 protein_coding synonymous_variant LOW 144T>C His48His
M0018853 MNFGGPLD_00003 5360 14 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3287T>A None
M0018854 MNFGGPLD_00003 5373 16 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -3300C>T None
M0018855 MNFGGPLD_00003 5391 14 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3318G>A None
M0018856 MNFGGPLD_00010 6839 10 Skin 0.20 protein_coding synonymous_variant LOW 84A>T Leu28Leu
M0018857 MNFGGPLD_00010 6842 10 Skin 0.20 protein_coding synonymous_variant LOW 81C>A Gly27Gly
M0018858 MNFGGPLD_00010 6863 10 Skin 0.20 protein_coding synonymous_variant LOW 60C>T Arg20Arg
M0018859 MNFGGPLD_00010 6866 10 Skin 0.20 protein_coding synonymous_variant LOW 57G>A Lys19Lys
M0018860 MNFGGPLD_00010 6872 10 Skin 0.20 protein_coding synonymous_variant LOW 51G>A Val17Val
M0018861 MNFGGPLD_00001 54 3 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -44A>T None
M0018862 MNFGGPLD_00003 1363 9 Skin 0.18 protein_coding synonymous_variant LOW 711A>G Ala237Ala
M0018863 MNFGGPLD_00003 1366 9 Skin 0.18 protein_coding synonymous_variant LOW 708G>A Leu236Leu
M0018864 MNFGGPLD_00003 1369 9 Skin 0.18 protein_coding synonymous_variant LOW 705T>C Pro235Pro
M0018865 MNFGGPLD_00003 1402 9 Skin 0.18 protein_coding synonymous_variant LOW 672T>C His224His
M0018866 MNFGGPLD_00003 1405 9 Skin 0.18 protein_coding synonymous_variant LOW 669C>A Gly223Gly
M0018867 MNFGGPLD_00003 1408 9 Skin 0.18 protein_coding synonymous_variant LOW 666C>T Ala222Ala
M0018868 MNFGGPLD_00004 2752 6 Skin 0.12 protein_coding synonymous_variant LOW 399C>T Thr133Thr
M0018869 MNFGGPLD_00009 6264 11 Skin 0.22 protein_coding synonymous_variant LOW 138G>T Leu46Leu
M0018870 MNFGGPLD_00009 6285 11 Skin 0.22 protein_coding synonymous_variant LOW 117T>C His39His
M0018871 MNFGGPLD_00009 6294 11 Skin 0.22 protein_coding synonymous_variant LOW 108T>C Ile36Ile
M0018872 MNFGGPLD_00007 5117 10 Skin 0.20 protein_coding synonymous_variant LOW 231A>G Ala77Ala
M0018873 MNFGGPLD_00007 5139 10 Skin 0.20 protein_coding missense_variant MODERATE 209A>G His70Arg
M0018874 MNFGGPLD_00007 5141 10 Skin 0.20 protein_coding synonymous_variant LOW 207G>A Leu69Leu
M0018875 MNFGGPLD_00010 6758 12 Skin 0.24 protein_coding synonymous_variant LOW 165G>A Glu55Glu
M0018876 MNFGGPLD_00014 10289 4 Skin 0.08 protein_coding synonymous_variant LOW 414C>T Ile138Ile
M0018877 MNFGGPLD_00014 10313 4 Skin 0.08 protein_coding synonymous_variant LOW 438C>T Arg146Arg
M0018878 MNFGGPLD_00016 11589 5 Skin 0.10 protein_coding synonymous_variant LOW 294T>C Ile98Ile
M0018879 MNFGGPLD_00003 5437 13 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -3364T>G None
M0018880 MNFGGPLD_00008 5453 13 Skin 0.25 protein_coding synonymous_variant LOW 12T>C Asn4Asn
M0018881 MNFGGPLD_00003 1738 7 Skin 0.14 protein_coding synonymous_variant LOW 336C>T Tyr112Tyr
M0018882 MNFGGPLD_00003 1747 6 Skin 0.12 protein_coding synonymous_variant LOW 327C>T Ile109Ile
M0018883 MNFGGPLD_00003 1764 7 Skin 0.14 protein_coding missense_variant MODERATE 310G>A Val104Ile
M0018884 MNFGGPLD_00004 2341 6 Skin 0.12 protein_coding synonymous_variant LOW 810G>C Gly270Gly
M0018885 MNFGGPLD_00004 2374 6 Skin 0.12 protein_coding synonymous_variant LOW 777G>C Leu259Leu
M0018886 MNFGGPLD_00002 644 4 Skin 0.08 protein_coding synonymous_variant LOW 150G>A Glu50Glu
M0018887 MNFGGPLD_00001 118 4 Skin 0.08 protein_coding synonymous_variant LOW 21A>G Ala7Ala
M0018888 MNFGGPLD_00001 133 4 Skin 0.08 protein_coding synonymous_variant LOW 36T>C Gly12Gly
M0018889 MNFGGPLD_00001 149 4 Skin 0.08 protein_coding synonymous_variant LOW 52C>T Leu18Leu
M0018890 MNFGGPLD_00001 157 4 Skin 0.08 protein_coding synonymous_variant LOW 60C>T Asp20Asp
M0018891 MNFGGPLD_00001 160 5 Skin 0.10 protein_coding synonymous_variant LOW 63A>G Leu21Leu
M0018892 MNFGGPLD_00001 163 4 Skin 0.08 protein_coding synonymous_variant LOW 66G>C Val22Val
M0018893 MNFGGPLD_00001 166 4 Skin 0.08 protein_coding synonymous_variant LOW 69A>G Glu23Glu
M0018894 MNFGGPLD_00014 10115 6 Skin 0.12 protein_coding synonymous_variant LOW 240G>A Val80Val
M0018895 MNFGGPLD_00014 10130 8 Skin 0.16 protein_coding synonymous_variant LOW 255A>G Ala85Ala
M0018896 MNFGGPLD_00013 8972 10 Skin 0.20 protein_coding synonymous_variant LOW 327C>A Ala109Ala
M0018897 MNFGGPLD_00013 9011 8 Skin 0.16 protein_coding synonymous_variant LOW 288G>A Ala96Ala
M0018898 MNFGGPLD_00013 9047 8 Skin 0.16 protein_coding synonymous_variant LOW 252A>G Ala84Ala
M0018899 MNFGGPLD_00013 9062 8 Skin 0.16 protein_coding synonymous_variant LOW 237T>G Ala79Ala
M0018900 MNFGGPLD_00013 9209 10 Skin 0.20 protein_coding synonymous_variant LOW 90C>T Leu30Leu
M0018901 MNFGGPLD_00016 11751 6 Skin 0.12 protein_coding synonymous_variant LOW 456T>C Gly152Gly
M0018902 MNFGGPLD_00001 244 3 Skin 0.06 protein_coding synonymous_variant LOW 147T>G Ser49Ser
M0018903 MNFGGPLD_00014 10234 5 Skin 0.10 protein_coding missense_variant MODERATE 359T>A Phe120Tyr
M0018904 MNFGGPLD_00014 10211 3 Skin 0.06 protein_coding synonymous_variant LOW 336C>T Ser112Ser
M0018905 MNFGGPLD_00016 11778 4 Skin 0.08 protein_coding synonymous_variant LOW 483C>T Gly161Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term