| Cluster Information | Plasmid Cluster ID | C1851 |
| Reference Plasmid | 1111525849663500_bin.20__k141_485895 | |
| Reference Plasmid Size | 307922 | |
| Reference Plasmid GC Content | 0.53 | |
| Reference Plasmid Mobility Type | non-mobilizable |
| mutid | gname | pos | count | tissue | frequnt | biotype | consequence | impact | nucchange | aachange |
|---|---|---|---|---|---|---|---|---|---|---|
| M0018910 | ABIGDKOG_00165 | 164212 | 10 | Skin | 0.02 | protein_coding | synonymous_variant | LOW | 462T>C | Asp154Asp |
| M0018911 | ABIGDKOG_00165 | 164251 | 10 | Skin | 0.02 | protein_coding | missense_variant | MODERATE | 423A>G | Ile141Met |
| M0018912 | ABIGDKOG_00155 | 157721 | 23 | Skin | 0.05 | protein_coding | downstream_gene_variant | MODIFIER | *4484T>C | None |
| M0018913 | ABIGDKOG_00018 | 18418 | 15 | Skin | 0.03 | protein_coding | synonymous_variant | LOW | 141A>G | Ser47Ser |
| M0018914 | ABIGDKOG_00089 | 86365 | 6 | Skin | 0.01 | protein_coding | upstream_gene_variant | MODIFIER | -4712A>C | None |
| M0018915 | ABIGDKOG_00088 | 80989 | 5 | Skin | 0.01 | protein_coding | synonymous_variant | LOW | 111G>A | Gln37Gln |
| Gene Name | vf_gene_id | vf_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | vf_category | gene_description | condition |
|---|---|---|---|---|---|---|---|---|---|---|---|
| ABIGDKOG_00044 | VFG000520 | TTSS (SPI-2 encode) | 70.5 | 9e-28 | 1 | 88 | 1.0 | 1 | Effector delivery system | type III secretion system minor export apparatus protein SsaS | experiment |
| ABIGDKOG_00045 | VFG000519 | TTSS (SPI-2 encode) | 80.8 | 4.8e-91 | 1 | 214 | 0.9953 | 0.9953 | Effector delivery system | type III secretion system minor export apparatus protein SsaR | experiment |
| ABIGDKOG_00050 | VFG000514 | TTSS (SPI-2 encode) | 70.6 | 1.1e-253 | 6 | 686 | 0.9927 | 1 | Effector delivery system | type III secretion system major export apparatus protein ssaV | experiment |
| ABIGDKOG_00058 | VFG000507 | TTSS (SPI-2 encode) | 76.1 | 5.2e-26 | 1 | 71 | 1.0 | 1 | Effector delivery system | type III secretion system needle filament protein SsaG | experiment |
| ABIGDKOG_00096 | VFG000574 | MgtB | 83 | 0 | 1 | 910 | 1.0 | 1.0022 | Nutritional/Metabolic factor | Mg2+ transport protein | experiment |
| ABIGDKOG_00153 | VFG002356 | Flagella | 85.8 | 0 | 1 | 690 | 0.9971 | 0.9971 | Motility | flagellar biosynthesis protein FlhA | experiment |
| ABIGDKOG_00159 | VFG043205 | Flagella | 81.5 | 5.3e-90 | 10 | 214 | 0.9579 | 0.9579 | Motility | chemotaxis regulator CheZ | experiment |
| ABIGDKOG_00160 | VFG043206 | Flagella | 91.5 | 2e-63 | 1 | 129 | 1.0 | 1 | Motility | chemotaxis regulatory protein CheY | experiment |
| ABIGDKOG_00161 | VFG043207 | Flagella | 84.5 | 5.1e-167 | 1 | 349 | 1.0 | 1 | Motility | chemotaxis-specific methylesterase CheB | experiment |
| ABIGDKOG_00162 | VFG043208 | Flagella | 71.4 | 2.6e-116 | 6 | 288 | 0.9792 | 0.9895 | Motility | chemotaxis methyltransferase CheR | experiment |
| ABIGDKOG_00165 | VFG043210 | Flagella | 82.6 | 3.3e-71 | 1 | 161 | 0.9699 | 0.9758 | Motility | purine-binding chemotaxis protein CheW | experiment |
| ABIGDKOG_00166 | VFG043211 | Flagella | 74.8 | 2.7e-265 | 3 | 672 | 0.9897 | 0.9824 | Motility | chemotaxis protein CheA | experiment |
| ABIGDKOG_00168 | VFG043213 | Flagella | 81.5 | 2e-132 | 1 | 297 | 1.0 | 1.0068 | Motility | flagellar motor protein MotA | experiment |
| ABIGDKOG_00169 | VFG002358 | Flagella | 83.4 | 5.3e-89 | 1 | 192 | 1.0 | 0.9948 | Motility | flagellar biosynthesis transcription activator FlhC | experiment |
| ABIGDKOG_00170 | VFG002359 | Flagella | 77.6 | 2.2e-42 | 1 | 116 | 1.0 | 1 | Motility | flagellar transcriptional activator FlhD | experiment |
| ABIGDKOG_00204 | VFG002319 | Flagella | 84.3 | 6.3e-108 | 1 | 236 | 0.9874 | 0.9833 | Motility | flagellar biosynthesis sigma factor | experiment |
| ABIGDKOG_00212 | VFG002325 | Flagella | 75.8 | 1.7e-49 | 1 | 128 | 0.9412 | 0.9697 | Motility | flagellar protein FliS | experiment |
| ABIGDKOG_00220 | VFG002329 | Flagella | 83.3 | 1.6e-149 | 3 | 331 | 0.994 | 0.997 | Motility | flagellar motor switch protein G | experiment |
| ABIGDKOG_00222 | VFG002331 | Flagella | 85.5 | 1.8e-220 | 1 | 454 | 0.9956 | 1 | Motility | flagellum-specific ATP synthase FliI | experiment |
| ABIGDKOG_00226 | VFG002335 | Flagella | 84.7 | 8.7e-164 | 1 | 333 | 0.997 | 0.997 | Motility | flagellar motor switch protein FliM | experiment |
| ABIGDKOG_00227 | VFG002336 | Flagella | 78.3 | 1.6e-52 | 1 | 137 | 1.0 | 0.9928 | Motility | flagellar motor switch protein FliN | experiment |
| ABIGDKOG_00229 | VFG002338 | Flagella | 84.9 | 9.3e-107 | 7 | 245 | 0.9755 | 0.956 | Motility | flagellar biosynthetic protein FliP | experiment |
| ABIGDKOG_00230 | VFG002339 | Flagella | 75.3 | 8.8e-31 | 1 | 89 | 1.0 | 1 | Motility | flagellar biosynthetic protein FliQ | experiment |
| ABIGDKOG_00007 | VFG041463 | PAI-2 encoded | 72.7 | 5.9e-141 | 1 | 366 | 0.9892 | 0.9865 | Effector delivery system | EscU/YscU/HrcU family type III secretion system export apparatus switch protein | prediction |
| ABIGDKOG_00008 | VFG041465 | PAI-2 encoded | 75.4 | 1.4e-104 | 1 | 252 | 0.9921 | 0.9921 | Effector delivery system | type III secretion system export apparatus subunit SctT | prediction |
| ABIGDKOG_00009 | VFG041464 | PAI-2 encoded | 89.3 | 7.1e-34 | 1 | 84 | 1.0 | 1 | Effector delivery system | type III secretion system export apparatus subunit SctS | prediction |
| ABIGDKOG_00010 | VFG041469 | PAI-2 encoded | 85.7 | 2.5e-102 | 1 | 223 | 1.0 | 1 | Effector delivery system | EscR/YscR/HrcR family type III secretion system export apparatus protein | prediction |
| ABIGDKOG_00014 | VFG041471 | PAI-2 encoded | 82.8 | 2.7e-206 | 1 | 431 | 1.0 | 1 | Effector delivery system | type III secretion system ATPase SctN | prediction |
| ABIGDKOG_00016 | VFG041472 | PAI-2 encoded | 82.3 | 1.50000000000002e-310 | 5 | 687 | 0.9942 | 0.9942 | Effector delivery system | EscV/YscV/HrcV family type III secretion system export apparatus protein | prediction |
| ABIGDKOG_00018 | VFG041474 | PAI-2 encoded | 76.4 | 2.5e-250 | 17 | 591 | 0.9696 | 0.9762 | Effector delivery system | type III secretion system outer membrane ring subunit SctC | prediction |
| ABIGDKOG_00021 | VFG041477 | PAI-2 encoded | 71.8 | 2.7e-28 | 3 | 87 | 0.977 | 0.9551 | Effector delivery system | type III secretion system needle complex protein | prediction |
| ABIGDKOG_00022 | VFG041476 | PAI-2 encoded | 72.5 | 3.7e-35 | 6 | 107 | 0.9533 | 0.9533 | Effector delivery system | type III secretion system inner rod subunit SctI | prediction |
| ABIGDKOG_00044 | VFG020907 | TTSS (SPI-2 encode) | 70.5 | 5.2e-27 | 1 | 88 | 1.0 | 1 | Effector delivery system | type III secretion system minor export apparatus protein SsaS | prediction |
| ABIGDKOG_00045 | VFG000519 | TTSS (SPI-2 encode) | 80.8 | 3.6e-90 | 1 | 214 | 0.9953 | 0.9953 | Effector delivery system | type III secretion system minor export apparatus protein SsaR | prediction |
| ABIGDKOG_00050 | VFG003915 | TTSS (SPI-2 encode) | 70.8 | 9.6e-254 | 6 | 686 | 0.9927 | 1 | Effector delivery system | type III secretion system major export apparatus protein ssaV | prediction |
| ABIGDKOG_00058 | VFG000507 | TTSS (SPI-2 encode) | 76.1 | 3.9e-25 | 1 | 71 | 1.0 | 1 | Effector delivery system | type III secretion system needle filament protein SsaG | prediction |
| ABIGDKOG_00096 | VFG018402 | MgtB | 83.3 | 0 | 1 | 910 | 1.0 | 1.0022 | Nutritional/Metabolic factor | Mg2+ transport protein | prediction |
| ABIGDKOG_00152 | VFG043033 | Peritrichous flagella | 82.3 | 4.1e-57 | 1 | 130 | 1.0 | 1 | Motility | flagellar protein FlhE | prediction |
| ABIGDKOG_00153 | VFG043034 | Peritrichous flagella | 92.6 | 0 | 1 | 692 | 1.0 | 1 | Motility | flagellar biosynthesis protein FlhA | prediction |
| ABIGDKOG_00154 | VFG043035 | Peritrichous flagella | 81.8 | 3.7e-178 | 3 | 382 | 0.9948 | 0.9922 | Motility | flagellar biosynthesis protein FlhB | prediction |
| ABIGDKOG_00159 | VFG043036 | Peritrichous flagella | 86.4 | 1.6e-98 | 1 | 214 | 1.0 | 1 | Motility | protein phosphatase CheZ | prediction |
| ABIGDKOG_00160 | VFG043089 | Peritrichous flagella | 95.3 | 4.1e-65 | 1 | 129 | 1.0 | 1 | Motility | chemotaxis response regulator CheY | prediction |
| ABIGDKOG_00161 | VFG043038 | Peritrichous flagella | 95.1 | 5.7e-186 | 1 | 349 | 1.0 | 1 | Motility | chemotaxis response regulator protein-glutamate methylesterase | prediction |
| ABIGDKOG_00162 | VFG043039 | Peritrichous flagella | 87.5 | 1.8e-145 | 1 | 289 | 1.0 | 1.0035 | Motility | chemotaxis protein-glutamate O-methyltransferase | prediction |
| ABIGDKOG_00164 | VFG043040 | Peritrichous flagella | 76.2 | 3.3e-212 | 1 | 554 | 1.0 | 1.0018 | Motility | methyl-accepting chemotaxis protein II | prediction |
| ABIGDKOG_00165 | VFG043041 | Peritrichous flagella | 89.8 | 3.2e-78 | 1 | 166 | 1.0 | 0.994 | Motility | chemotaxis protein CheW | prediction |
| ABIGDKOG_00166 | VFG043042 | Peritrichous flagella | 84.8 | 1.8e-308 | 1 | 677 | 1.0 | 1.0089 | Motility | sensory histitine protein kinase | prediction |
| ABIGDKOG_00167 | VFG043043 | Peritrichous flagella | 89.3 | 1.7e-154 | 1 | 309 | 1.0 | 1 | Motility | flagellar motor protein MotB | prediction |
| ABIGDKOG_00168 | VFG043044 | Peritrichous flagella | 95.9 | 2.3e-151 | 1 | 295 | 0.9933 | 1 | Motility | flagellar motor stator protein MotA | prediction |
| ABIGDKOG_00169 | VFG043045 | Peritrichous flagella | 92.2 | 2e-100 | 1 | 192 | 1.0 | 0.9897 | Motility | regulator of flagellar biosynthesis | prediction |
| ABIGDKOG_00170 | VFG043098 | Peritrichous flagella | 87.1 | 1.7e-49 | 1 | 116 | 1.0 | 1 | Motility | flagellar transcriptional regulator FlhD | prediction |
| ABIGDKOG_00202 | VFG043099 | Peritrichous flagella | 90.2 | 1.2e-133 | 19 | 284 | 0.9366 | 1 | Motility | cystine ABC transporter substrate-binding protein | prediction |
| ABIGDKOG_00203 | VFG043048 | Peritrichous flagella | 76 | 7.6e-81 | 1 | 183 | 1.0 | 1 | Motility | flagellar regulatory protein FliZ | prediction |
| ABIGDKOG_00204 | VFG043049 | Peritrichous flagella | 94.6 | 1.4e-122 | 1 | 239 | 1.0 | 1 | Motility | RNA polymerase sigma factor FliA | prediction |
| ABIGDKOG_00212 | VFG043053 | Peritrichous flagella | 73.6 | 9.7e-49 | 1 | 129 | 0.9485 | 0.9556 | Motility | flagellar export chaperone FliS | prediction |
| ABIGDKOG_00218 | VFG043106 | Peritrichous flagella | 77.5 | 7.9e-35 | 2 | 103 | 0.9903 | 0.9808 | Motility | flagellar hook-basal body complex protein FliE | prediction |
| ABIGDKOG_00219 | VFG043056 | Peritrichous flagella | 81.8 | 6.3e-256 | 1 | 555 | 1.0 | 0.9911 | Motility | flagellar M-ring protein FliF | prediction |
| ABIGDKOG_00220 | VFG043057 | Peritrichous flagella | 96.7 | 1.3e-171 | 1 | 331 | 1.0 | 1 | Motility | flagellar motor switch protein FliG | prediction |
| ABIGDKOG_00221 | VFG043109 | Peritrichous flagella | 79.4 | 4.2e-100 | 1 | 233 | 0.9915 | 1.0219 | Motility | flagellar assembly protein FliH | prediction |
| ABIGDKOG_00222 | VFG043059 | Peritrichous flagella | 94.3 | 4.1e-245 | 1 | 455 | 0.9978 | 0.9978 | Motility | flagellum-specific ATP synthase FliI | prediction |
| ABIGDKOG_00223 | VFG043060 | Peritrichous flagella | 77.6 | 8.8e-56 | 1 | 147 | 1.0 | 1 | Motility | flagellar biosynthesis chaperone FliJ | prediction |
| ABIGDKOG_00225 | VFG043062 | Peritrichous flagella | 81.2 | 3.6e-59 | 1 | 138 | 1.0 | 0.8903 | Motility | flagellar basal body-associated protein FliL | prediction |
| ABIGDKOG_00226 | VFG043063 | Peritrichous flagella | 95.8 | 1.1e-183 | 1 | 334 | 1.0 | 1 | Motility | flagellar motor switch protein FliM | prediction |
| ABIGDKOG_00227 | VFG043064 | Peritrichous flagella | 93.4 | 5.1e-66 | 1 | 137 | 1.0 | 1 | Motility | flagellar motor switch protein FliN | prediction |
| ABIGDKOG_00229 | VFG043117 | Peritrichous flagella | 91.8 | 5.5e-119 | 1 | 245 | 1.0 | 1 | Motility | flagellar type III secretion system pore protein FliP | prediction |
| ABIGDKOG_00230 | VFG043067 | Peritrichous flagella | 95.5 | 3.9e-38 | 1 | 89 | 1.0 | 1 | Motility | flagellar export apparatus protein FliQ | prediction |
| ABIGDKOG_00231 | VFG043068 | Peritrichous flagella | 84.1 | 3.1e-120 | 1 | 264 | 1.0 | 1 | Motility | flagellar biosynthetic protein FliR | prediction |
| ABIGDKOG_00246 | VFG044280 | Proteobactin | 70.6 | 4e-131 | 8 | 347 | 0.9742 | 0.9444 | Nutritional/Metabolic factor | iron ABC transporter permease | prediction |
| Gene Name | compound | identity | evalue | qstart | qend | query_coverage | subject_coverage | group |
|---|---|---|---|---|---|---|---|---|
| ABIGDKOG_00132 | Zinc (Zn) | 81.7 | 3.7e-134 | 4 | 293 | 0.9898 | 0.9355 | experiment |
| ABIGDKOG_00133 | Zinc (Zn) | 86.5 | 1e-124 | 1 | 251 | 1.0000 | 1.0000 | experiment |
| ABIGDKOG_00134 | Zinc (Zn) | 90.7 | 1.2e-123 | 1 | 259 | 0.9885 | 0.9923 | experiment |
| ABIGDKOG_00135 | Chromium (Cr), Tellurium (Te), Selenium (Se) | 72.5 | 4.9e-138 | 1 | 334 | 0.9970 | 0.9517 | experiment |
| ABIGDKOG_00146 | Copper (Cu) | 74 | 2.4e-102 | 1 | 242 | 0.9798 | 0.9758 | experiment |
| ABIGDKOG_00234 | Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] | 72 | 3.9e-27 | 1 | 75 | 1.0000 | 1.0000 | experiment |
| ABIGDKOG_00243 | Hydrogen Peroxide (H2O2) [class: Peroxides], Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Sodium Nitrite (NaNo2) [class: Nitrites] | 70.8 | 7.3e-143 | 1 | 371 | 1.0054 | 1.0219 | experiment |
| ABIGDKOG_00132 | Zinc (Zn) | 88.6 | 7.5e-144 | 4 | 293 | 0.9898 | 0.9236 | prediction |
| ABIGDKOG_00133 | Zinc (Zn) | 100 | 7.3e-140 | 1 | 251 | 1.0000 | 1.0000 | prediction |
| ABIGDKOG_00134 | Zinc (Zn) | 93.5 | 4.4e-127 | 1 | 262 | 1.0000 | 1.0000 | prediction |
| ABIGDKOG_00135 | Chromium (Cr), Tellurium (Te), Selenium (Se) | 75.7 | 3.6e-142 | 1 | 333 | 0.9911 | 0.9433 | prediction |
| ABIGDKOG_00146 | Copper (Cu) | 75.2 | 7e-103 | 1 | 242 | 0.9798 | 0.9758 | prediction |
| ABIGDKOG_00183 | Iron (Fe), Copper (Cu), Manganese (Mn) | 78.9 | 1.4e-70 | 1 | 161 | 0.9758 | 0.9758 | prediction |
| ABIGDKOG_00234 | Cadmium (Cd), Hydrogen Peroxide (H2O2) [class: Peroxides], Hydrochloric acid (HCl) [class: Acid] | 100 | 3.1e-38 | 1 | 75 | 1.0000 | 1.0000 | prediction |
| ABIGDKOG_00243 | Hydrogen Peroxide (H2O2) [class: Peroxides], Carbonyl cyanide 3-chlorophenylhydrazone (CCCP) [class: Hydrazone], Benzylkonium Chloride (BAC) [class: Quaternary Ammonium Compounds (QACs)], Chlorhexidine [class: Biguanides], Sodium Nitrite (NaNo2) [class: Nitrites] | 71.8 | 1.6e-143 | 1 | 371 | 1.0027 | 1.0248 | prediction |
| Gene Name | aro_accession | identity | evalue | qstart | qend | query_coverage | subject_coverage | drug_class | amr_gene_family | resistance_mechanism |
|---|---|---|---|---|---|---|---|---|---|---|
| ABIGDKOG_00243 | ARO:3004122 | 79.5 | 6.65e-213 | 1 | 371 | 1.0108 | 1.0027 | monobactam | General Bacterial Porin with reduced permeability to beta-lactams | reduced permeability to antibiotic |
| Gene Name | phi_molconn_id | host gene_name | identity | evalue | qstart | qend | query_coverage | subject_coverage | host_descripton | disease_name | function | phenotype_of_mutant |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABIGDKOG_00044 | PHI:10150 | STM14_RS07955 (ssaS) | 70.5 | 2.4e-27 | 1 | 88 | 1.0000 | 1.0000 | eudicots | infection | type III secretion system export apparatus protein | reduced virulence |
| ABIGDKOG_00045 | PHI:10149 | STM14_RS07950 (ssaR) | 80.8 | 1.3e-90 | 1 | 214 | 0.9953 | 0.9953 | eudicots | infection | type III secretion system export apparatus protein | reduced virulence |
| ABIGDKOG_00050 | PHI:123433 | ssaV | 70.6 | 2.9e-253 | 6 | 686 | 0.9927 | 1.0000 | rodents | salmonellosis | SPI-2 type III secretion system apparatus protein SsaV | reduced virulence |
| ABIGDKOG_00058 | PHI:10136 | STM14_RS07885 (ssaG) | 76.1 | 1.4e-25 | 1 | 71 | 1.0000 | 1.0000 | eudicots | infection | type III secretion system needle protein | reduced virulence |
| ABIGDKOG_00094 | PHI:7534 | CcmA (VK055_1938) | 70.8 | 4.6e-80 | 1 | 219 | 1.0000 | 0.9296 | rodents | pneumonia | heme ABC exporter, ATP-binding protein | unaffected pathogenicity |
| ABIGDKOG_00096 | PHI:7573 | MgtB | 74.6 | 0 | 22 | 909 | 0.9758 | 0.9844 | moths | zoonotic infection | magnesium ion transporter | reduced virulence |
| ABIGDKOG_00102 | PHI:10199 | treA | 76.5 | 4.3e-263 | 1 | 565 | 0.9965 | 0.9965 | birds | urinary tract infection | periplasmic trehalase | reduced virulence |
| ABIGDKOG_00103 | PHI:124002 | yebE | 93.2 | 9e-148 | 1 | 293 | 1.0000 | 1.0000 | rodents | colitis | cpx-regulated gene | unaffected pathogenicity |
| ABIGDKOG_00104 | PHI:9896 | Prc | 90.2 | 0 | 1 | 682 | 1.0000 | 1.0000 | rodents | urinary tract infection | tail-specific protease | reduced virulence |
| ABIGDKOG_00105 | PHI:8783 | ProQ | 89.1 | 5.7e-105 | 1 | 229 | 1.0000 | 1.0000 | primates | salmonellosis | RNA chaperone | reduced virulence |
| ABIGDKOG_00123 | PHI:124001 | yebE | 71.6 | 2.3e-79 | 1 | 218 | 1.0000 | 0.9909 | rodents | colitis | cpx-regulated gene | unaffected pathogenicity |
| ABIGDKOG_00124 | PHI:8653 | purT | 85.2 | 2.7e-187 | 1 | 392 | 1.0000 | 1.0000 | primates | infection | formate-dependent phosphoribosylglycinamide formyltransferase | unaffected pathogenicity |
| ABIGDKOG_00125 | PHI:11149 | eda | 89.2 | 1.2e-104 | 1 | 212 | 1.0000 | 0.9953 | eudicots | soft rot (potato); blackleg disease (potato) | 2-keto-3-deoxy-6-phosphogluconate aldolase | reduced virulence |
| ABIGDKOG_00126 | PHI:11150 | edd | 74.7 | 1.6e-268 | 1 | 601 | 0.9967 | 0.9804 | eudicots | soft rot (potato); blackleg disease (potato) | phosphogluconate dehydratase | unaffected pathogenicity |
| ABIGDKOG_00131 | PHI:4185 | ypo2062 | 73.4 | 1.9e-181 | 22 | 439 | 0.9522 | 1.0000 | rodents | bubonic plague | putative DNA binding protein | reduced virulence |
| ABIGDKOG_00132 | PHI:11005 | znuA | 81.7 | 6.3e-133 | 4 | 293 | 0.9898 | 0.9226 | even-toed ungulates | infection | Zn(2(+)) ABC transporter periplasmic binding | reduced virulence |
| ABIGDKOG_00133 | PHI:11007 | znuC | 86.5 | 1.7e-123 | 1 | 251 | 1.0000 | 1.0000 | even-toed ungulates | infection | Zn(2(+)) ABC transporter ATP binding subunit | reduced virulence |
| ABIGDKOG_00134 | PHI:11006 | znuB | 90.7 | 2e-122 | 1 | 259 | 0.9885 | 0.9923 | even-toed ungulates | infection | Zn(2(+)) ABC transporter membrane subunit | reduced virulence |
| ABIGDKOG_00153 | PHI:8731 | flhA | 92.6 | 0 | 1 | 692 | 1.0000 | 1.0000 | rodents | typhoid | flagellar biosynthesis protein | reduced virulence |
| ABIGDKOG_00154 | PHI:11174 | flhB | 83.4 | 2.6e-179 | 1 | 380 | 0.9948 | 0.9948 | primates | neonatal sepsis; neonatal meningitis | flagellar biosynthetic protein | reduced virulence |
| ABIGDKOG_00159 | PHI:10050 | cheZ | 86.4 | 5.7e-99 | 1 | 214 | 1.0000 | 1.0000 | rodents | salmonellosis | protein phosphatase/ chemotactic response protein | reduced virulence |
| ABIGDKOG_00160 | PHI:8732 | cheY | 94.6 | 4.2e-65 | 1 | 129 | 1.0000 | 1.0000 | rodents | typhoid | chemotaxis regulator protein | reduced virulence |
| ABIGDKOG_00161 | PHI:6461 | cheB | 95.1 | 2e-186 | 1 | 349 | 1.0000 | 1.0000 | rodents | salmonellosis | chemotaxis | reduced virulence |
| ABIGDKOG_00162 | PHI:11916 | cheR | 87.5 | 6.4e-146 | 1 | 289 | 1.0000 | 1.0000 | primates | infection | chemotaxis protein methyltransferase | increased virulence (hypervirulence) |
| ABIGDKOG_00164 | PHI:6983 | cheM | 76.2 | 1.2e-212 | 1 | 554 | 1.0000 | 1.0000 | primates | salmonellosis | methyl-accepting chemotaxis protein | reduced virulence |
| ABIGDKOG_00165 | PHI:6536 | cheW | 89 | 6.2e-77 | 1 | 163 | 0.9819 | 0.9760 | birds | meningitis | chemotaxis protein | unaffected pathogenicity |
| ABIGDKOG_00166 | PHI:6535 | cheA | 80.3 | 2.2e-290 | 1 | 677 | 1.0000 | 1.0000 | birds | meningitis | chemotaxis protein | reduced virulence |
| ABIGDKOG_00167 | PHI:6534 | motB | 84.8 | 1.1e-146 | 1 | 309 | 1.0000 | 1.0000 | birds | meningitis | motility protein | reduced virulence |
| ABIGDKOG_00168 | PHI:6533 | motA | 92.9 | 3.1e-148 | 1 | 297 | 1.0000 | 1.0000 | birds | meningitis | motility protein | reduced virulence |
| ABIGDKOG_00169 | PHI:8572 | flhC (Dda3937_02784) | 83.3 | 2.1e-89 | 1 | 192 | 1.0000 | 1.0000 | eudicots | soft rot | flagellar transcriptional activator | reduced virulence |
| ABIGDKOG_00170 | PHI:7271 | flhDC | 87.1 | 6.5e-49 | 1 | 116 | 1.0000 | 1.0000 | primates | salmonellosis | regulatory protein | reduced virulence |
| ABIGDKOG_00196 | PHI:560 | sirA | 93.6 | 1.2e-112 | 1 | 218 | 1.0000 | 1.0000 | rodents | gastroenteritis | None | reduced virulence |
| ABIGDKOG_00203 | PHI:9178 | FliZ | 76 | 2.7e-81 | 1 | 183 | 1.0000 | 1.0000 | rodents | salmonellosis | flagellar protein | reduced virulence |
| ABIGDKOG_00223 | PHI:6463 | filj | 77.6 | 3.1e-56 | 1 | 147 | 1.0000 | 1.0000 | rodents | salmonellosis | flagellar protein | reduced virulence |
| ABIGDKOG_00232 | PHI:3013 | rcsA | 82.6 | 2.6e-93 | 1 | 207 | 1.0000 | 1.0000 | rodents | food poisoning | positive regulator of capsular polysaccharide synthesis. RcsA and RcsB form a complex to promote transcription of the genes for capsule synthesis. | increased virulence (hypervirulence) |
| ABIGDKOG_00243 | PHI:2872 | ompK36 | 71.8 | 8.5e-143 | 1 | 371 | 1.0000 | 1.0000 | rodents | pneumonia | outer membrane protein | reduced virulence |
| ABIGDKOG_00246 | PHI:11344 | c2516 | 79.4 | 1.5e-144 | 3 | 347 | 0.9885 | 0.9801 | birds | avian colibacillosis | putative iron transport protein | reduced virulence |
| ABIGDKOG_00276 | PHI:10578 | PccS1_002702 | 72.2 | 3.8e-128 | 1 | 316 | 1.0000 | 1.0000 | monocots | soft rot | transcriptional regulator, LysR family | unaffected pathogenicity |
| ABIGDKOG_00277 | PHI:12254 | nac | 75.7 | 4.2e-124 | 1 | 305 | 1.0000 | 1.0000 | monocots | Stewart's wilt; leaf blight (maize) | nitrogen assimilation transcriptional regulator | unaffected pathogenicity |
| Gene Name | cazy_id | identity | evalue | qstart | qend | query_coverage | subject_coverage |
|---|---|---|---|---|---|---|---|
| ABIGDKOG_00027 | QIU89187.1|GH23 | 100 | 3.11e-117 | 1 | 167 | 1 | 1 |
| ABIGDKOG_00102 | QIU89243.1|GH37 | 99.6 | 0 | 1 | 567 | 1 | 1 |
| ABIGDKOG_00131 | QIU89270.1|CBM50 | 99.8 | 4.57000001178638e-317 | 1 | 439 | 1 | 1 |
| ABIGDKOG_00150 | QIU89288.1|GH105 | 99.7 | 4.4e-291 | 1 | 379 | 1 | 1 |
| ABIGDKOG_00172 | WHP29751.1|GT20 | 84.2 | 2.17e-293 | 1 | 472 | 1 | 1 |
| ABIGDKOG_00207 | QIU89365.1|GT41 | 99.4 | 0 | 1 | 1116 | 1 | 1 |
| ABIGDKOG_00214 | QIU89371.1|GH13_5 | 99.4 | 0 | 1 | 495 | 1 | 1 |
| ABIGDKOG_00244 | QHA89360.1|AA10 | 72.6 | 1.23e-130 | 18 | 269 | 0.9368 | 0.9387 |
| Gene Name | tcid | identity | evalue | qstart | qend | query_coverage | subject_coverage | class_field | class_term | subclass | subclass_term | family | family_term |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ABIGDKOG_00090 | 9.B.14.1.3 | 72.1 | 3.5e-269 | 1 | 645 | 0.9908 | 0.9861 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.14 | The Putative Heme Handling Protein (HHP) Family |
| ABIGDKOG_00093 | 9.B.14.2.3 | 78 | 2.9e-107 | 1 | 243 | 0.9798 | 1.0000 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.14 | The Putative Heme Handling Protein (HHP) Family |
| ABIGDKOG_00094 | 3.A.1.107.3 | 75.8 | 1.8e-87 | 1 | 219 | 1.0000 | 1.0580 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00103 | 9.B.1.1.6 | 92.5 | 1.3e-146 | 1 | 293 | 1.0000 | 1.0000 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.1 | The Integral Membrane CAAX Protease (CAAX Protease) Family |
| ABIGDKOG_00104 | 9.B.174.1.2 | 90.2 | 0 | 1 | 682 | 1.0000 | 1.0000 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.174 | The Two Tunnel Gated C-terminal Processing Protease (CTP) Family |
| ABIGDKOG_00108 | 9.A.69.1.2 | 84 | 0 | 1 | 875 | 1.0000 | 1.0000 | 9 | Incompletely Characterized Transport Systems | 9.A | Recognized transporters of unknown biochemical mechanism | 9.A.69 | The Intermembrane Phospholipid Translocase (IMPL-T) Family |
| ABIGDKOG_00132 | 3.A.1.15.5 | 81.7 | 1.4e-132 | 4 | 293 | 0.9898 | 1.0958 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00133 | 3.A.1.15.5 | 86.5 | 3.9e-123 | 1 | 251 | 1.0000 | 0.9617 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00134 | 3.A.1.15.5 | 90.7 | 4.5e-122 | 1 | 259 | 0.9885 | 0.9923 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00146 | 9.B.158.1.2 | 74 | 9.1e-101 | 1 | 242 | 0.9798 | 0.9758 | 9 | Incompletely Characterized Transport Systems | 9.B | Putative transport proteins | 9.B.158 | The Cut Copper Homeostasis (Cut) Family |
| ABIGDKOG_00151 | 2.A.2.5.2 | 83.7 | 4.5e-246 | 1 | 508 | 0.9639 | 0.9788 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.2 | The Glycoside-Pentoside-Hexuronide (GPH):Cation Symporter Family |
| ABIGDKOG_00153 | 3.A.6.2.1 | 92.6 | 0 | 1 | 692 | 1.0000 | 2.6212 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00154 | 3.A.6.2.1 | 81.8 | 2.9e-178 | 3 | 382 | 0.9948 | 1.4394 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00167 | 1.A.30.1.7 | 89.3 | 1.4e-154 | 1 | 309 | 1.0000 | 1.0000 | 1 | Channels/Pores | 1.A | α-Type Channels | 1.A.30 | The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily |
| ABIGDKOG_00168 | 1.A.30.1.7 | 95.9 | 1.8e-151 | 1 | 295 | 0.9933 | 0.9515 | 1 | Channels/Pores | 1.A | α-Type Channels | 1.A.30 | The H+- or Na+-translocating Bacterial Flagellar Motor/ExbBD Outer Membrane Transport Energizer (Mot/Exb) Superfamily |
| ABIGDKOG_00174 | 3.A.1.2.2 | 92.1 | 5.5e-162 | 1 | 326 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00175 | 3.A.1.2.2 | 88.5 | 5.7e-259 | 1 | 504 | 1.0000 | 1.5366 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00176 | 3.A.1.2.2 | 91.1 | 5.3e-173 | 1 | 326 | 1.0000 | 0.9939 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00185 | 2.A.42.1.1 | 80.9 | 2.8e-179 | 1 | 403 | 1.0000 | 1.0000 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.42 | The Hydroxy/Aromatic Amino Acid Permease (HAAAP) Family |
| ABIGDKOG_00199 | 3.A.1.3.10 | 91.6 | 1.1e-125 | 1 | 250 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00200 | 3.A.1.3.10 | 91.4 | 5.3e-108 | 1 | 222 | 1.0000 | 0.8880 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00202 | 3.A.1.3.10 | 90.2 | 9.4e-134 | 19 | 284 | 0.9366 | 1.0640 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.1 | The ATP-binding Cassette (ABC) Superfamily |
| ABIGDKOG_00219 | 3.A.6.2.1 | 81.8 | 5e-256 | 1 | 555 | 1.0000 | 2.1212 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00221 | 3.A.6.2.1 | 78.1 | 5.3e-98 | 1 | 233 | 0.9915 | 0.8826 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00222 | 3.A.6.2.1 | 94.3 | 3.3e-245 | 1 | 455 | 0.9978 | 1.7235 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00229 | 3.A.6.2.1 | 92.2 | 1.4e-117 | 1 | 245 | 1.0000 | 0.9280 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00231 | 3.A.6.2.1 | 84.1 | 2.5e-120 | 1 | 264 | 1.0000 | 1.0000 | 3 | Primary Active Transporters | 3.A | P-P-bond-hydrolysis-driven transporters | 3.A.6 | The Type III (Virulence-related) Secretory Pathway (IIISP) Family |
| ABIGDKOG_00238 | 2.A.7.3.22 | 83.6 | 4.8e-136 | 1 | 298 | 0.9835 | 0.9739 | 2 | Electrochemical Potential-driven Transporters | 2.A | Porters (uniporters, symporters, antiporters) | 2.A.7 | The Drug/Metabolite Transporter (DMT) Superfamily |
| ABIGDKOG_00243 | 1.B.1.1.22 | 80.9 | 4.5e-176 | 1 | 371 | 1.0000 | 1.0000 | 1 | Channels/Pores | 1.B | β-Barrel Porins | 1.B.1 | The General Bacterial Porin (GBP) Family |