Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1870
  Reference Plasmid   1111525849664761_bin.1__k141_175904
  Reference Plasmid Size   7540
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019148 FIINIHAI_00001 173 4 Skin 0.67 protein_coding synonymous_variant LOW 147T>G Gly49Gly
M0019149 FIINIHAI_00001 212 4 Skin 0.67 protein_coding synonymous_variant LOW 186G>T Leu62Leu
M0019150 FIINIHAI_00001 215 4 Skin 0.67 protein_coding synonymous_variant LOW 189C>T Ser63Ser
M0019151 FIINIHAI_00001 218 4 Skin 0.67 protein_coding missense_variant MODERATE 192G>T Gln64His
M0019152 FIINIHAI_00001 222 3 Skin 0.50 protein_coding missense_variant MODERATE 196C>A Gln66Lys
M0019153 FIINIHAI_00001 230 4 Skin 0.67 protein_coding synonymous_variant LOW 204T>C Ala68Ala
M0019154 FIINIHAI_00002 278 3 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -115G>T None
M0019155 FIINIHAI_00002 292 4 Skin 0.67 protein_coding upstream_gene_variant MODIFIER -101G>T None
M0019156 FIINIHAI_00002 415 4 Skin 0.67 protein_coding missense_variant MODERATE 23T>C Val8Ala
M0019157 FIINIHAI_00002 671 4 Skin 0.67 protein_coding synonymous_variant LOW 279A>C Pro93Pro
M0019158 FIINIHAI_00002 713 3 Skin 0.50 protein_coding synonymous_variant LOW 321A>G Val107Val
M0019159 FIINIHAI_00002 722 4 Skin 0.67 protein_coding synonymous_variant LOW 330A>G Lys110Lys
M0019160 FIINIHAI_00002 737 4 Skin 0.67 protein_coding synonymous_variant LOW 345T>C Ser115Ser
M0019161 FIINIHAI_00002 833 3 Skin 0.50 protein_coding synonymous_variant LOW 441G>A Leu147Leu
M0019162 FIINIHAI_00002 842 4 Skin 0.67 protein_coding synonymous_variant LOW 450A>G Ala150Ala
M0019163 FIINIHAI_00002 860 4 Skin 0.67 protein_coding synonymous_variant LOW 468C>T Gly156Gly
M0019164 FIINIHAI_00002 869 4 Skin 0.67 protein_coding synonymous_variant LOW 477C>G Thr159Thr
M0019165 FIINIHAI_00002 881 4 Skin 0.67 protein_coding synonymous_variant LOW 489G>A Lys163Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term