Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1874
  Reference Plasmid   1111525849664761_bin.9__k141_51869
  Reference Plasmid Size   18548
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019188 MOGHEAKJ_00012 9308 3 Skin 0.18 protein_coding missense_variant MODERATE 2819T>C Ile940Thr
M0019189 MOGHEAKJ_00011 7458 3 Skin 0.18 protein_coding synonymous_variant LOW 213T>C Thr71Thr
M0019190 MOGHEAKJ_00011 7764 3 Skin 0.18 protein_coding synonymous_variant LOW 519T>C Tyr173Tyr
M0019191 MOGHEAKJ_00011 8037 3 Skin 0.18 protein_coding synonymous_variant LOW 792T>C Thr264Thr
M0019192 MOGHEAKJ_00011 8322 3 Skin 0.18 protein_coding synonymous_variant LOW 1077G>A Pro359Pro
M0019193 MOGHEAKJ_00012 9100 3 Skin 0.18 protein_coding synonymous_variant LOW 3027G>A Thr1009Thr
M0019194 MOGHEAKJ_00012 9109 3 Skin 0.18 protein_coding synonymous_variant LOW 3018G>A Lys1006Lys
M0019195 MOGHEAKJ_00012 9147 3 Skin 0.18 protein_coding missense_variant MODERATE 2980A>G Ile994Val
M0019196 MOGHEAKJ_00012 9148 3 Skin 0.18 protein_coding synonymous_variant LOW 2979G>A Glu993Glu
M0019197 MOGHEAKJ_00012 9153 3 Skin 0.18 protein_coding missense_variant MODERATE 2974A>G Asn992Asp
M0019198 MOGHEAKJ_00012 9156 3 Skin 0.18 protein_coding missense_variant MODERATE 2971G>A Val991Ile
M0019199 MOGHEAKJ_00012 9157 3 Skin 0.18 protein_coding synonymous_variant LOW 2970A>C Val990Val
M0019200 MOGHEAKJ_00012 9325 3 Skin 0.18 protein_coding synonymous_variant LOW 2802G>A Leu934Leu
M0019201 MOGHEAKJ_00012 9327 3 Skin 0.18 protein_coding missense_variant MODERATE 2800T>A Leu934Met
M0019202 MOGHEAKJ_00012 9418 3 Skin 0.18 protein_coding synonymous_variant LOW 2709G>A Thr903Thr
M0019203 MOGHEAKJ_00012 9430 3 Skin 0.18 protein_coding synonymous_variant LOW 2697C>T Ile899Ile
M0019204 MOGHEAKJ_00012 9436 4 Skin 0.24 protein_coding synonymous_variant LOW 2691C>T His897His
M0019205 MOGHEAKJ_00012 9441 3 Skin 0.18 protein_coding missense_variant MODERATE 2686T>G Ser896Ala
M0019206 MOGHEAKJ_00012 9442 3 Skin 0.18 protein_coding synonymous_variant LOW 2685A>G Ser895Ser
M0019207 MOGHEAKJ_00012 9823 3 Skin 0.18 protein_coding synonymous_variant LOW 2304T>C Asn768Asn
M0019208 MOGHEAKJ_00012 9826 3 Skin 0.18 protein_coding missense_variant MODERATE 2301G>T Leu767Phe
M0019209 MOGHEAKJ_00012 9830 3 Skin 0.18 protein_coding missense_variant MODERATE 2297A>G Asn766Ser
M0019210 MOGHEAKJ_00012 9832 3 Skin 0.18 protein_coding synonymous_variant LOW 2295C>T Arg765Arg
M0019211 MOGHEAKJ_00012 9930 4 Skin 0.24 protein_coding missense_variant MODERATE 2197A>G Ile733Val
M0019212 MOGHEAKJ_00012 9931 4 Skin 0.24 protein_coding synonymous_variant LOW 2196T>C Tyr732Tyr
M0019213 MOGHEAKJ_00012 10030 4 Skin 0.24 protein_coding synonymous_variant LOW 2097C>T His699His
M0019214 MOGHEAKJ_00012 10108 4 Skin 0.24 protein_coding synonymous_variant LOW 2019A>G Ala673Ala
M0019215 MOGHEAKJ_00012 10220 5 Skin 0.29 protein_coding missense_variant MODERATE 1907A>G Lys636Arg
M0019216 MOGHEAKJ_00012 10234 4 Skin 0.24 protein_coding synonymous_variant LOW 1893T>C Ala631Ala
M0019217 MOGHEAKJ_00012 10309 7 Skin 0.41 protein_coding synonymous_variant LOW 1818A>G Leu606Leu
M0019218 MOGHEAKJ_00012 10324 7 Skin 0.41 protein_coding synonymous_variant LOW 1803A>G Leu601Leu
M0019219 MOGHEAKJ_00012 10459 7 Skin 0.41 protein_coding synonymous_variant LOW 1668A>G Val556Val
M0019220 MOGHEAKJ_00012 10813 7 Skin 0.41 protein_coding synonymous_variant LOW 1314T>C Gly438Gly
M0019221 MOGHEAKJ_00012 10848 7 Skin 0.41 protein_coding missense_variant MODERATE 1279G>C Ala427Pro
M0019222 MOGHEAKJ_00012 10901 3 Skin 0.18 protein_coding missense_variant MODERATE 1226A>G Asn409Ser
M0019223 MOGHEAKJ_00012 10915 6 Skin 0.35 protein_coding synonymous_variant LOW 1212T>C Ser404Ser
M0019224 MOGHEAKJ_00012 11010 5 Skin 0.29 protein_coding missense_variant MODERATE 1117A>G Asn373Asp
M0019225 MOGHEAKJ_00012 11012 5 Skin 0.29 protein_coding missense_variant MODERATE 1115A>G Asp372Gly
M0019226 MOGHEAKJ_00012 11019 6 Skin 0.35 protein_coding synonymous_variant LOW 1108T>C Leu370Leu
M0019227 MOGHEAKJ_00012 11020 5 Skin 0.29 protein_coding synonymous_variant LOW 1107C>T Ser369Ser
M0019228 MOGHEAKJ_00012 11021 5 Skin 0.29 protein_coding missense_variant MODERATE 1106G>T Ser369Ile
M0019229 MOGHEAKJ_00012 11024 4 Skin 0.24 protein_coding missense_variant MODERATE 1103A>C Tyr368Ser
M0019230 MOGHEAKJ_00012 11025 6 Skin 0.35 protein_coding missense_variant MODERATE 1102T>C Tyr368His
M0019231 MOGHEAKJ_00012 11029 5 Skin 0.29 protein_coding missense_variant MODERATE 1098A>C Lys366Asn
M0019232 MOGHEAKJ_00012 11034 5 Skin 0.29 protein_coding missense_variant MODERATE 1093A>G Thr365Ala
M0019233 MOGHEAKJ_00012 11035 5 Skin 0.29 protein_coding synonymous_variant LOW 1092C>T Ser364Ser
M0019234 MOGHEAKJ_00012 11146 4 Skin 0.24 protein_coding synonymous_variant LOW 981G>A Leu327Leu
M0019235 MOGHEAKJ_00012 11155 5 Skin 0.29 protein_coding synonymous_variant LOW 972C>T Phe324Phe
M0019236 MOGHEAKJ_00012 11188 4 Skin 0.24 protein_coding synonymous_variant LOW 939T>G Leu313Leu
M0019237 MOGHEAKJ_00012 11218 4 Skin 0.24 protein_coding synonymous_variant LOW 909A>G Val303Val
M0019238 MOGHEAKJ_00012 11902 4 Skin 0.24 protein_coding synonymous_variant LOW 225C>T Ile75Ile
M0019239 MOGHEAKJ_00012 11908 3 Skin 0.18 protein_coding missense_variant MODERATE 219A>C Glu73Asp
M0019240 MOGHEAKJ_00012 12024 4 Skin 0.24 protein_coding missense_variant MODERATE 103A>G Ile35Val
M0019241 MOGHEAKJ_00013 12350 3 Skin 0.18 protein_coding synonymous_variant LOW 933C>T Ala311Ala
M0019242 MOGHEAKJ_00013 12387 4 Skin 0.24 protein_coding missense_variant MODERATE 896G>A Arg299Lys
M0019243 MOGHEAKJ_00013 12466 4 Skin 0.24 protein_coding missense_variant MODERATE 817G>C Glu273Gln
M0019244 MOGHEAKJ_00013 12467 4 Skin 0.24 protein_coding synonymous_variant LOW 816A>C Ile272Ile
M0019245 MOGHEAKJ_00013 12468 4 Skin 0.24 protein_coding missense_variant MODERATE 815T>C Ile272Thr
M0019246 MOGHEAKJ_00013 12668 4 Skin 0.24 protein_coding synonymous_variant LOW 615T>C His205His
M0019247 MOGHEAKJ_00013 13246 3 Skin 0.18 protein_coding missense_variant MODERATE 37A>C Thr13Pro
M0019248 MOGHEAKJ_00012 13380 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1254T>A None
M0019249 MOGHEAKJ_00012 13396 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1270A>G None
M0019250 MOGHEAKJ_00012 13401 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1275A>G None
M0019251 MOGHEAKJ_00012 13408 7 Skin 0.41 protein_coding upstream_gene_variant MODIFIER -1282A>G None
M0019252 MOGHEAKJ_00012 13457 3 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -1331C>T None
M0019253 MOGHEAKJ_00012 13488 6 Skin 0.35 protein_coding upstream_gene_variant MODIFIER -1362A>G None
M0019254 MOGHEAKJ_00014 13564 5 Skin 0.29 protein_coding missense_variant MODERATE 2194A>C Ile732Leu
M0019255 MOGHEAKJ_00014 13594 6 Skin 0.35 protein_coding synonymous_variant LOW 2164A>C Arg722Arg
M0019256 MOGHEAKJ_00014 13912 4 Skin 0.24 protein_coding missense_variant MODERATE 1846A>G Lys616Glu
M0019257 MOGHEAKJ_00014 13949 3 Skin 0.18 protein_coding synonymous_variant LOW 1809G>C Leu603Leu
M0019258 MOGHEAKJ_00014 13992 4 Skin 0.24 protein_coding missense_variant MODERATE 1766T>C Phe589Ser
M0019259 MOGHEAKJ_00014 14229 5 Skin 0.29 protein_coding missense_variant MODERATE 1529A>G His510Arg
M0019260 MOGHEAKJ_00014 14951 3 Skin 0.18 protein_coding synonymous_variant LOW 807C>G Ser269Ser
M0019261 MOGHEAKJ_00014 14955 3 Skin 0.18 protein_coding missense_variant MODERATE 803T>A Phe268Tyr
M0019262 MOGHEAKJ_00014 15013 3 Skin 0.18 protein_coding missense_variant MODERATE 745A>G Asn249Asp
M0019263 MOGHEAKJ_00014 15020 3 Skin 0.18 protein_coding synonymous_variant LOW 738T>A Arg246Arg
M0019264 MOGHEAKJ_00014 15026 3 Skin 0.18 protein_coding synonymous_variant LOW 732C>A Arg244Arg
M0019265 MOGHEAKJ_00014 15194 4 Skin 0.24 protein_coding synonymous_variant LOW 564C>T His188His
M0019266 MOGHEAKJ_00014 15344 6 Skin 0.35 protein_coding missense_variant MODERATE 414C>G Cys138Trp
M0019267 MOGHEAKJ_00006 4350 3 Skin 0.18 protein_coding synonymous_variant LOW 1017T>A Ala339Ala
M0019268 MOGHEAKJ_00007 4808 3 Skin 0.18 protein_coding synonymous_variant LOW 240C>T Arg80Arg
M0019269 MOGHEAKJ_00008 4896 3 Skin 0.18 protein_coding start_lost HIGH 3G>T Met1?
M0019270 MOGHEAKJ_00008 5265 3 Skin 0.18 protein_coding synonymous_variant LOW 372T>C Asp124Asp
M0019271 MOGHEAKJ_00008 5266 3 Skin 0.18 protein_coding missense_variant MODERATE 373C>G Gln125Glu
M0019272 MOGHEAKJ_00012 9601 3 Skin 0.18 protein_coding synonymous_variant LOW 2526G>A Leu842Leu
M0019273 MOGHEAKJ_00012 10315 3 Skin 0.18 protein_coding synonymous_variant LOW 1812T>C Thr604Thr
M0019274 MOGHEAKJ_00004 2800 3 Skin 0.18 protein_coding missense_variant MODERATE 193G>A Val65Ile
M0019275 MOGHEAKJ_00006 3507 3 Skin 0.18 protein_coding synonymous_variant LOW 174A>G Ala58Ala
M0019276 MOGHEAKJ_00006 3608 3 Skin 0.18 protein_coding missense_variant MODERATE 275T>C Ile92Thr
M0019277 MOGHEAKJ_00006 3767 3 Skin 0.18 protein_coding missense_variant MODERATE 434A>G His145Arg
M0019278 MOGHEAKJ_00014 13805 3 Skin 0.18 protein_coding synonymous_variant LOW 1953C>T Asn651Asn
M0019279 MOGHEAKJ_00014 13993 3 Skin 0.18 protein_coding missense_variant MODERATE 1765T>G Phe589Val
M0019280 MOGHEAKJ_00014 14363 3 Skin 0.18 protein_coding synonymous_variant LOW 1395G>A Lys465Lys
M0019281 MOGHEAKJ_00015 16125 4 Skin 0.24 protein_coding synonymous_variant LOW 174G>A Val58Val
M0019282 MOGHEAKJ_00016 16618 3 Skin 0.18 protein_coding missense_variant MODERATE 1255A>G Thr419Ala
M0019283 MOGHEAKJ_00014 15274 3 Skin 0.18 protein_coding missense_variant MODERATE 484C>G Gln162Glu
M0019284 MOGHEAKJ_00014 15303 3 Skin 0.18 protein_coding missense_variant MODERATE 455G>A Arg152Gln
M0019285 MOGHEAKJ_00014 15308 3 Skin 0.18 protein_coding synonymous_variant LOW 450G>A Leu150Leu
M0019286 MOGHEAKJ_00014 15386 3 Skin 0.18 protein_coding synonymous_variant LOW 372G>A Ala124Ala
M0019287 MOGHEAKJ_00015 15865 3 Skin 0.18 protein_coding missense_variant MODERATE 434C>A Ala145Asp
M0019288 MOGHEAKJ_00015 15906 3 Skin 0.18 protein_coding synonymous_variant LOW 393A>G Glu131Glu
M0019289 MOGHEAKJ_00015 16057 3 Skin 0.18 protein_coding missense_variant MODERATE 242C>A Thr81Asn
M0019290 MOGHEAKJ_00015 16060 3 Skin 0.18 protein_coding missense_variant MODERATE 239A>C Asp80Ala
M0019291 MOGHEAKJ_00015 16074 3 Skin 0.18 protein_coding synonymous_variant LOW 225A>G Val75Val
M0019292 MOGHEAKJ_00015 16101 3 Skin 0.18 protein_coding synonymous_variant LOW 198T>C Tyr66Tyr
M0019293 MOGHEAKJ_00015 16175 3 Skin 0.18 protein_coding missense_variant MODERATE 124T>C Ser42Pro
M0019294 MOGHEAKJ_00015 16207 3 Skin 0.18 protein_coding missense_variant MODERATE 92C>T Ala31Val
M0019295 MOGHEAKJ_00012 10378 3 Skin 0.18 protein_coding synonymous_variant LOW 1749A>G Gln583Gln
M0019296 MOGHEAKJ_00012 10554 4 Skin 0.24 protein_coding missense_variant MODERATE 1573G>C Val525Leu
M0019297 MOGHEAKJ_00012 11452 3 Skin 0.18 protein_coding missense_variant MODERATE 675A>C Glu225Asp
M0019298 MOGHEAKJ_00012 11461 3 Skin 0.18 protein_coding synonymous_variant LOW 666G>A Leu222Leu
M0019299 MOGHEAKJ_00002 2041 3 Skin 0.18 protein_coding synonymous_variant LOW 531C>T Ile177Ile
M0019300 MOGHEAKJ_00002 2092 3 Skin 0.18 protein_coding synonymous_variant LOW 582G>T Ser194Ser
M0019301 MOGHEAKJ_00014 13814 3 Skin 0.18 protein_coding synonymous_variant LOW 1944T>C Thr648Thr
M0019302 MOGHEAKJ_00014 13868 3 Skin 0.18 protein_coding synonymous_variant LOW 1890A>G Lys630Lys
M0019303 MOGHEAKJ_00014 13870 3 Skin 0.18 protein_coding missense_variant MODERATE 1888A>C Lys630Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term