Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1889
  Reference Plasmid   1111525849667962_bin.15__k141_152166
  Reference Plasmid Size   8540
  Reference Plasmid GC Content   0.36
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019408 BPKPNOAF_00009 8297 3 Skin 0.19 protein_coding synonymous_variant LOW 1209G>A Gly403Gly
M0019409 BPKPNOAF_00009 7178 3 Skin 0.19 protein_coding synonymous_variant LOW 90A>G Val30Val
M0019410 BPKPNOAF_00004 3912 3 Skin 0.19 protein_coding synonymous_variant LOW 297A>G Arg99Arg
M0019411 BPKPNOAF_00006 5087 3 Skin 0.19 protein_coding synonymous_variant LOW 456T>C Leu152Leu
M0019412 BPKPNOAF_00006 5114 5 Skin 0.31 protein_coding synonymous_variant LOW 429C>T Ile143Ile
M0019413 BPKPNOAF_00006 5321 5 Skin 0.31 protein_coding synonymous_variant LOW 222C>T Tyr74Tyr
M0019414 BPKPNOAF_00006 5399 3 Skin 0.19 protein_coding synonymous_variant LOW 144G>A Leu48Leu
M0019415 BPKPNOAF_00007 5611 4 Skin 0.25 protein_coding synonymous_variant LOW 555A>G Glu185Glu
M0019416 BPKPNOAF_00007 5953 5 Skin 0.31 protein_coding synonymous_variant LOW 213A>C Ile71Ile
M0019417 BPKPNOAF_00006 5272 4 Skin 0.25 protein_coding synonymous_variant LOW 271C>T Leu91Leu
M0019418 BPKPNOAF_00006 5282 4 Skin 0.25 protein_coding synonymous_variant LOW 261A>G Glu87Glu
M0019419 BPKPNOAF_00003 3245 3 Skin 0.19 protein_coding missense_variant MODERATE 263A>G His88Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term