Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1902
  Reference Plasmid   1111525849668257_bin.12__k141_245277
  Reference Plasmid Size   36154
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019579 ICPNKNFO_00029 25223 63 Skin 0.49 protein_coding missense_variant MODERATE 380A>G Gln127Arg
M0019580 ICPNKNFO_00017 16112 38 Skin 0.29 protein_coding missense_variant MODERATE 752C>T Ala251Val
M0019581 ICPNKNFO_00019 17222 47 Skin 0.36 protein_coding synonymous_variant LOW 156T>C Ala52Ala
M0019582 ICPNKNFO_00022 19540 10 Skin 0.08 protein_coding synonymous_variant LOW 699C>G Gly233Gly
M0019583 ICPNKNFO_00023 20927 60 Skin 0.47 protein_coding synonymous_variant LOW 576G>A Leu192Leu
M0019584 ICPNKNFO_00013 12797 4 Skin 0.03 protein_coding synonymous_variant LOW 402A>G Thr134Thr
M0019585 ICPNKNFO_00016 15148 4 Skin 0.03 protein_coding synonymous_variant LOW 210G>C Ala70Ala
M0019586 ICPNKNFO_00016 15214 6 Skin 0.05 protein_coding synonymous_variant LOW 276A>G Ala92Ala
M0019587 ICPNKNFO_00018 16695 4 Skin 0.03 protein_coding missense_variant MODERATE 433C>G Gln145Glu
M0019588 ICPNKNFO_00018 16712 4 Skin 0.03 protein_coding missense_variant MODERATE 450T>A Asp150Glu
M0019589 ICPNKNFO_00020 21563 11 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2747T>G None
M0019590 ICPNKNFO_00028 24110 5 Skin 0.04 protein_coding synonymous_variant LOW 172T>C Leu58Leu
M0019591 ICPNKNFO_00022 24432 9 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4194A>C None
M0019592 ICPNKNFO_00029 24907 9 Skin 0.07 protein_coding synonymous_variant LOW 696C>T Thr232Thr
M0019593 ICPNKNFO_00033 29764 3 Skin 0.02 protein_coding synonymous_variant LOW 678G>T Leu226Leu
M0019594 ICPNKNFO_00028 24308 6 Skin 0.05 protein_coding missense_variant MODERATE 370G>A Gly124Ser
M0019595 ICPNKNFO_00015 14743 3 Skin 0.02 protein_coding missense_variant MODERATE 398C>G Thr133Ser
M0019596 ICPNKNFO_00017 15453 7 Skin 0.05 protein_coding synonymous_variant LOW 93A>G Val31Val
M0019597 ICPNKNFO_00017 15618 4 Skin 0.03 protein_coding synonymous_variant LOW 258T>C Asn86Asn
M0019598 ICPNKNFO_00012 12264 3 Skin 0.02 protein_coding synonymous_variant LOW 465G>A Gln155Gln
M0019599 ICPNKNFO_00031 28006 5 Skin 0.04 protein_coding synonymous_variant LOW 180G>A Leu60Leu
M0019600 ICPNKNFO_00031 28182 4 Skin 0.03 protein_coding missense_variant MODERATE 4A>G Met2Val
M0019601 ICPNKNFO_00033 28879 3 Skin 0.02 protein_coding synonymous_variant LOW 1563A>G Glu521Glu
M0019602 ICPNKNFO_00030 26359 7 Skin 0.05 protein_coding synonymous_variant LOW 111A>G Gln37Gln
M0019603 ICPNKNFO_00031 26685 5 Skin 0.04 protein_coding missense_variant MODERATE 1501G>A Ala501Thr
M0019604 ICPNKNFO_00029 30472 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4870A>T None
M0019605 ICPNKNFO_00029 30498 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4896A>T None
M0019606 ICPNKNFO_00029 30499 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4897A>C None
M0019607 ICPNKNFO_00029 30506 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4904G>A None
M0019608 ICPNKNFO_00029 30511 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4909T>G None
M0019609 ICPNKNFO_00029 30522 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4920C>T None
M0019610 ICPNKNFO_00029 30523 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4921A>C None
M0019611 ICPNKNFO_00029 25168 11 Skin 0.09 protein_coding synonymous_variant LOW 435C>T Gly145Gly
M0019612 ICPNKNFO_00033 29922 6 Skin 0.05 protein_coding missense_variant MODERATE 520C>A Gln174Lys
M0019613 ICPNKNFO_00033 29968 7 Skin 0.05 protein_coding synonymous_variant LOW 474A>G Glu158Glu
M0019614 ICPNKNFO_00020 17683 7 Skin 0.05 protein_coding synonymous_variant LOW 1134A>G Val378Val
M0019615 ICPNKNFO_00033 29899 5 Skin 0.04 protein_coding synonymous_variant LOW 543A>G Glu181Glu
M0019616 ICPNKNFO_00020 19397 7 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -581G>A None
M0019617 ICPNKNFO_00026 26517 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2968G>T None
M0019618 ICPNKNFO_00026 26568 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3019G>T None
M0019619 ICPNKNFO_00026 26583 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3034G>C None
M0019620 ICPNKNFO_00026 26591 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3042C>T None
M0019621 ICPNKNFO_00026 26606 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3057G>A None
M0019622 ICPNKNFO_00031 27517 10 Skin 0.08 protein_coding synonymous_variant LOW 669T>C Thr223Thr
M0019623 ICPNKNFO_00031 26992 3 Skin 0.02 protein_coding synonymous_variant LOW 1194T>C His398His
M0019624 ICPNKNFO_00031 27045 5 Skin 0.04 protein_coding missense_variant MODERATE 1141C>A Pro381Thr
M0019625 ICPNKNFO_00031 27052 5 Skin 0.04 protein_coding missense_variant MODERATE 1134C>G Asn378Lys
M0019626 ICPNKNFO_00023 20612 9 Skin 0.07 protein_coding synonymous_variant LOW 891G>T Ser297Ser
M0019627 ICPNKNFO_00029 25435 7 Skin 0.05 protein_coding synonymous_variant LOW 168T>G Gly56Gly
M0019628 ICPNKNFO_00029 25498 3 Skin 0.02 protein_coding synonymous_variant LOW 105A>G Val35Val
M0019629 ICPNKNFO_00017 15960 3 Skin 0.02 protein_coding synonymous_variant LOW 600G>A Leu200Leu
M0019630 ICPNKNFO_00022 19557 7 Skin 0.05 protein_coding missense_variant MODERATE 682A>G Ile228Val
M0019631 ICPNKNFO_00031 27606 5 Skin 0.04 protein_coding missense_variant MODERATE 580A>G Ser194Gly
M0019632 ICPNKNFO_00025 22526 9 Skin 0.07 protein_coding synonymous_variant LOW 621T>G Pro207Pro
M0019633 ICPNKNFO_00020 18379 4 Skin 0.03 protein_coding synonymous_variant LOW 438A>G Glu146Glu
M0019634 ICPNKNFO_00020 18941 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -125A>C None
M0019635 ICPNKNFO_00021 18974 3 Skin 0.02 protein_coding synonymous_variant LOW 156C>T Pro52Pro
M0019636 ICPNKNFO_00020 19227 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -411C>T None
M0019637 ICPNKNFO_00020 19251 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -435G>A None
M0019638 ICPNKNFO_00020 19263 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -447T>C None
M0019639 ICPNKNFO_00020 19289 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -473C>T None
M0019640 ICPNKNFO_00030 26045 9 Skin 0.07 protein_coding missense_variant MODERATE 425T>C Val142Ala
M0019641 ICPNKNFO_00031 27802 6 Skin 0.05 protein_coding synonymous_variant LOW 384G>A Glu128Glu
M0019642 ICPNKNFO_00017 15688 3 Skin 0.02 protein_coding missense_variant MODERATE 328A>G Ile110Val
M0019643 ICPNKNFO_00028 24193 6 Skin 0.05 protein_coding synonymous_variant LOW 255C>T Arg85Arg
M0019644 ICPNKNFO_00025 22309 3 Skin 0.02 protein_coding missense_variant MODERATE 404T>C Leu135Pro
M0019645 ICPNKNFO_00028 24214 3 Skin 0.02 protein_coding synonymous_variant LOW 276G>C Leu92Leu
M0019646 ICPNKNFO_00028 24218 3 Skin 0.02 protein_coding missense_variant MODERATE 280G>A Ala94Thr
M0019647 ICPNKNFO_00028 24220 3 Skin 0.02 protein_coding synonymous_variant LOW 282C>T Ala94Ala
M0019648 ICPNKNFO_00028 24223 3 Skin 0.02 protein_coding synonymous_variant LOW 285C>G Gly95Gly
M0019649 ICPNKNFO_00028 24235 3 Skin 0.02 protein_coding synonymous_variant LOW 297C>G Gly99Gly
M0019650 ICPNKNFO_00028 24253 3 Skin 0.02 protein_coding synonymous_variant LOW 315C>T Asp105Asp
M0019651 ICPNKNFO_00033 29473 5 Skin 0.04 protein_coding synonymous_variant LOW 969T>C Asn323Asn
M0019652 ICPNKNFO_00025 22055 4 Skin 0.03 protein_coding synonymous_variant LOW 150G>A Pro50Pro
M0019653 ICPNKNFO_00022 19966 4 Skin 0.03 protein_coding synonymous_variant LOW 273T>C Arg91Arg
M0019654 ICPNKNFO_00030 25681 4 Skin 0.03 protein_coding synonymous_variant LOW 789A>G Ala263Ala
M0019655 ICPNKNFO_00033 29134 4 Skin 0.03 protein_coding synonymous_variant LOW 1308T>C Arg436Arg
M0019656 ICPNKNFO_00033 29146 4 Skin 0.03 protein_coding synonymous_variant LOW 1296G>C Ser432Ser
M0019657 ICPNKNFO_00033 29189 3 Skin 0.02 protein_coding missense_variant MODERATE 1253A>T Tyr418Phe
M0019658 ICPNKNFO_00033 29191 3 Skin 0.02 protein_coding synonymous_variant LOW 1251C>T Asp417Asp
M0019659 ICPNKNFO_00033 29194 3 Skin 0.02 protein_coding synonymous_variant LOW 1248C>T Gly416Gly
M0019660 ICPNKNFO_00023 25633 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -4131G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term