Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1907
  Reference Plasmid   1111525849668257_bin.2__k141_246044
  Reference Plasmid Size   29441
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019673 IDJMOBKJ_00016 21382 3 Skin 0.38 protein_coding synonymous_variant LOW 57T>C Asn19Asn
M0019674 IDJMOBKJ_00017 22251 4 Skin 0.50 protein_coding synonymous_variant LOW 744T>C Arg248Arg
M0019675 IDJMOBKJ_00018 23486 5 Skin 0.63 protein_coding synonymous_variant LOW 657A>G Ser219Ser
M0019676 IDJMOBKJ_00018 24023 4 Skin 0.50 protein_coding synonymous_variant LOW 120T>C Pro40Pro
M0019677 IDJMOBKJ_00018 24088 3 Skin 0.38 protein_coding missense_variant MODERATE 55T>C Phe19Leu
M0019678 IDJMOBKJ_00018 24095 3 Skin 0.38 protein_coding synonymous_variant LOW 48T>C Ala16Ala
M0019679 IDJMOBKJ_00015 24167 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4228T>C None
M0019680 IDJMOBKJ_00019 24219 3 Skin 0.38 protein_coding synonymous_variant LOW 895A>C Arg299Arg
M0019681 IDJMOBKJ_00019 24667 3 Skin 0.38 protein_coding synonymous_variant LOW 447T>C Arg149Arg
M0019682 IDJMOBKJ_00020 25822 3 Skin 0.38 protein_coding synonymous_variant LOW 225T>C Ala75Ala
M0019683 IDJMOBKJ_00021 26765 3 Skin 0.38 protein_coding synonymous_variant LOW 1041T>C Thr347Thr
M0019684 IDJMOBKJ_00021 26804 3 Skin 0.38 protein_coding synonymous_variant LOW 1002A>G Glu334Glu
M0019685 IDJMOBKJ_00021 27242 4 Skin 0.50 protein_coding synonymous_variant LOW 564T>C Ala188Ala
M0019686 IDJMOBKJ_00021 27398 3 Skin 0.38 protein_coding synonymous_variant LOW 408T>C Gly136Gly
M0019687 IDJMOBKJ_00021 27683 4 Skin 0.50 protein_coding synonymous_variant LOW 123T>C Asp41Asp
M0019688 IDJMOBKJ_00017 27869 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4875A>G None
M0019689 IDJMOBKJ_00017 27887 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4893G>A None
M0019690 IDJMOBKJ_00017 27895 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4901C>A None
M0019691 IDJMOBKJ_00017 27922 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4928G>C None
M0019692 IDJMOBKJ_00022 28484 3 Skin 0.38 protein_coding synonymous_variant LOW 276T>C Thr92Thr
M0019693 IDJMOBKJ_00019 29240 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4127C>T None
M0019694 IDJMOBKJ_00017 22593 4 Skin 0.50 protein_coding synonymous_variant LOW 402C>T Asp134Asp
M0019695 IDJMOBKJ_00018 23372 3 Skin 0.38 protein_coding synonymous_variant LOW 771C>T Tyr257Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
IDJMOBKJ_00017 3.A.1.2.5 70.6 1.7e-197 4 506 0.9692 1.4209 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
IDJMOBKJ_00018 3.A.1.2.5 77.9 7e-150 20 358 0.9443 0.9576 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily