Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1918
  Reference Plasmid   1111525849668387_bin.24__k141_1403504
  Reference Plasmid Size   4871
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019753 NJOPEMGB_00001 481 3 Skin 0.60 protein_coding synonymous_variant LOW 459A>G Lys153Lys
M0019754 NJOPEMGB_00001 583 3 Skin 0.60 protein_coding synonymous_variant LOW 561C>T Arg187Arg
M0019755 NJOPEMGB_00001 613 3 Skin 0.60 protein_coding synonymous_variant LOW 591C>T Asn197Asn
M0019756 NJOPEMGB_00001 1000 3 Skin 0.60 protein_coding synonymous_variant LOW 978C>T Cys326Cys
M0019757 NJOPEMGB_00002 1044 4 Skin 0.80 protein_coding synonymous_variant LOW 18A>G Pro6Pro
M0019758 NJOPEMGB_00002 1839 3 Skin 0.60 protein_coding synonymous_variant LOW 813T>C Tyr271Tyr
M0019759 NJOPEMGB_00005 2584 5 Skin 1.00 protein_coding synonymous_variant LOW 519C>A Arg173Arg
M0019760 NJOPEMGB_00006 3854 4 Skin 0.80 protein_coding missense_variant MODERATE 629G>A Arg210His
M0019761 NJOPEMGB_00006 3985 3 Skin 0.60 protein_coding synonymous_variant LOW 760C>T Leu254Leu
M0019762 NJOPEMGB_00001 331 3 Skin 0.60 protein_coding synonymous_variant LOW 309A>G Gly103Gly
M0019763 NJOPEMGB_00006 3720 3 Skin 0.60 protein_coding synonymous_variant LOW 495G>A Ala165Ala
M0019764 NJOPEMGB_00006 3728 3 Skin 0.60 protein_coding missense_variant MODERATE 503G>A Gly168Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term