Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1925
  Reference Plasmid   1111525849668582_bin.4__k141_169225
  Reference Plasmid Size   36205
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0019804 EFLJDGHD_00013 16267 13 Skin 0.16 protein_coding missense_variant MODERATE 361G>A Val121Ile
M0019805 EFLJDGHD_00013 16273 13 Skin 0.16 protein_coding missense_variant MODERATE 367G>A Ala123Thr
M0019806 EFLJDGHD_00013 16284 13 Skin 0.16 protein_coding synonymous_variant LOW 378G>C Pro126Pro
M0019807 EFLJDGHD_00013 16293 13 Skin 0.16 protein_coding synonymous_variant LOW 387C>T Arg129Arg
M0019808 EFLJDGHD_00013 16303 13 Skin 0.16 protein_coding missense_variant MODERATE 397A>T Met133Leu
M0019809 EFLJDGHD_00013 16323 13 Skin 0.16 protein_coding synonymous_variant LOW 417T>C Tyr139Tyr
M0019810 EFLJDGHD_00013 16346 13 Skin 0.16 protein_coding missense_variant MODERATE 440C>G Pro147Arg
M0019811 EFLJDGHD_00013 16392 12 Skin 0.14 protein_coding synonymous_variant LOW 486C>G Val162Val
M0019812 EFLJDGHD_00013 16410 12 Skin 0.14 protein_coding synonymous_variant LOW 504T>C Leu168Leu
M0019813 EFLJDGHD_00013 16464 14 Skin 0.17 protein_coding synonymous_variant LOW 558C>G Ala186Ala
M0019814 EFLJDGHD_00013 16470 14 Skin 0.17 protein_coding synonymous_variant LOW 564G>C Ala188Ala
M0019815 EFLJDGHD_00013 16478 14 Skin 0.17 protein_coding missense_variant MODERATE 572T>C Val191Ala
M0019816 EFLJDGHD_00013 16496 14 Skin 0.17 protein_coding missense_variant MODERATE 590A>G Gln197Arg
M0019817 EFLJDGHD_00013 16506 14 Skin 0.17 protein_coding synonymous_variant LOW 600G>C Ala200Ala
M0019818 EFLJDGHD_00013 16566 13 Skin 0.16 protein_coding synonymous_variant LOW 660T>C Asp220Asp
M0019819 EFLJDGHD_00014 17035 18 Skin 0.22 protein_coding missense_variant MODERATE 47T>C Val16Ala
M0019820 EFLJDGHD_00014 17867 14 Skin 0.17 protein_coding synonymous_variant LOW 879T>C Val293Val
M0019821 EFLJDGHD_00024 28718 15 Skin 0.18 protein_coding synonymous_variant LOW 696T>C Ile232Ile
M0019822 EFLJDGHD_00027 31138 3 Skin 0.04 protein_coding synonymous_variant LOW 36C>T Pro12Pro
M0019823 EFLJDGHD_00027 31178 3 Skin 0.04 protein_coding missense_variant MODERATE 76A>G Thr26Ala
M0019824 EFLJDGHD_00028 32650 13 Skin 0.16 protein_coding missense_variant MODERATE 1153A>C Met385Leu
M0019825 EFLJDGHD_00007 6527 8 Skin 0.10 protein_coding synonymous_variant LOW 123A>G Leu41Leu
M0019826 EFLJDGHD_00008 7655 23 Skin 0.28 protein_coding missense_variant MODERATE 92C>T Thr31Met
M0019827 EFLJDGHD_00009 9180 20 Skin 0.24 protein_coding synonymous_variant LOW 231G>C Val77Val
M0019828 EFLJDGHD_00009 9195 16 Skin 0.19 protein_coding synonymous_variant LOW 216T>G Arg72Arg
M0019829 EFLJDGHD_00009 9213 17 Skin 0.20 protein_coding synonymous_variant LOW 198C>T Tyr66Tyr
M0019830 EFLJDGHD_00009 9232 15 Skin 0.18 protein_coding missense_variant MODERATE 179A>G His60Arg
M0019831 EFLJDGHD_00009 9252 17 Skin 0.20 protein_coding synonymous_variant LOW 159A>G Pro53Pro
M0019832 EFLJDGHD_00009 9255 15 Skin 0.18 protein_coding synonymous_variant LOW 156G>T Val52Val
M0019833 EFLJDGHD_00009 9268 15 Skin 0.18 protein_coding missense_variant MODERATE 143T>C Val48Ala
M0019834 EFLJDGHD_00009 9294 15 Skin 0.18 protein_coding synonymous_variant LOW 117C>A Pro39Pro
M0019835 EFLJDGHD_00009 9306 15 Skin 0.18 protein_coding synonymous_variant LOW 105G>A Pro35Pro
M0019836 EFLJDGHD_00001 141 21 Skin 0.25 protein_coding synonymous_variant LOW 954C>G Ala318Ala
M0019837 EFLJDGHD_00009 8283 5 Skin 0.06 protein_coding synonymous_variant LOW 1128T>C His376His
M0019838 EFLJDGHD_00009 8295 7 Skin 0.08 protein_coding synonymous_variant LOW 1116T>C Tyr372Tyr
M0019839 EFLJDGHD_00009 8403 8 Skin 0.10 protein_coding synonymous_variant LOW 1008C>G Pro336Pro
M0019840 EFLJDGHD_00006 5169 4 Skin 0.05 protein_coding synonymous_variant LOW 486T>C Pro162Pro
M0019841 EFLJDGHD_00007 5846 7 Skin 0.08 protein_coding synonymous_variant LOW 804A>G Ala268Ala
M0019842 EFLJDGHD_00007 5855 8 Skin 0.10 protein_coding synonymous_variant LOW 795T>G Val265Val
M0019843 EFLJDGHD_00007 5924 6 Skin 0.07 protein_coding synonymous_variant LOW 726G>C Val242Val
M0019844 EFLJDGHD_00007 5945 5 Skin 0.06 protein_coding synonymous_variant LOW 705G>C Pro235Pro
M0019845 EFLJDGHD_00007 6589 7 Skin 0.08 protein_coding missense_variant MODERATE 61G>T Val21Phe
M0019846 EFLJDGHD_00007 6628 5 Skin 0.06 protein_coding missense_variant MODERATE 22G>A Ala8Thr
M0019847 EFLJDGHD_00008 6871 7 Skin 0.08 protein_coding synonymous_variant LOW 876T>G Leu292Leu
M0019848 EFLJDGHD_00008 6898 3 Skin 0.04 protein_coding synonymous_variant LOW 849C>G Pro283Pro
M0019849 EFLJDGHD_00008 7594 9 Skin 0.11 protein_coding synonymous_variant LOW 153C>G Val51Val
M0019850 EFLJDGHD_00004 7774 7 Skin 0.08 protein_coding upstream_gene_variant MODIFIER -4059C>A None
M0019851 EFLJDGHD_00004 7781 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4066T>C None
M0019852 EFLJDGHD_00031 34811 12 Skin 0.14 protein_coding stop_lost&splice_region_variant HIGH 232T>C Ter78Glnext*?
M0019853 EFLJDGHD_00004 2453 4 Skin 0.05 protein_coding synonymous_variant LOW 1263G>C Ala421Ala
M0019854 EFLJDGHD_00004 2458 4 Skin 0.05 protein_coding missense_variant MODERATE 1258A>G Thr420Ala
M0019855 EFLJDGHD_00004 2462 4 Skin 0.05 protein_coding synonymous_variant LOW 1254T>C Pro418Pro
M0019856 EFLJDGHD_00004 2504 4 Skin 0.05 protein_coding synonymous_variant LOW 1212T>C Phe404Phe
M0019857 EFLJDGHD_00004 2519 4 Skin 0.05 protein_coding synonymous_variant LOW 1197C>G Pro399Pro
M0019858 EFLJDGHD_00004 2609 3 Skin 0.04 protein_coding synonymous_variant LOW 1107C>T Asp369Asp
M0019859 EFLJDGHD_00004 2615 5 Skin 0.06 protein_coding synonymous_variant LOW 1101T>C Asp367Asp
M0019860 EFLJDGHD_00004 2654 5 Skin 0.06 protein_coding synonymous_variant LOW 1062A>G Arg354Arg
M0019861 EFLJDGHD_00004 3201 4 Skin 0.05 protein_coding missense_variant MODERATE 515A>G His172Arg
M0019862 EFLJDGHD_00004 3224 4 Skin 0.05 protein_coding synonymous_variant LOW 492T>C Val164Val
M0019863 EFLJDGHD_00004 3281 7 Skin 0.08 protein_coding synonymous_variant LOW 435C>G Pro145Pro
M0019864 EFLJDGHD_00004 3329 4 Skin 0.05 protein_coding synonymous_variant LOW 387C>T Tyr129Tyr
M0019865 EFLJDGHD_00005 3983 3 Skin 0.04 protein_coding synonymous_variant LOW 870G>C Arg290Arg
M0019866 EFLJDGHD_00005 4022 3 Skin 0.04 protein_coding synonymous_variant LOW 831G>A Glu277Glu
M0019867 EFLJDGHD_00006 5007 3 Skin 0.04 protein_coding synonymous_variant LOW 648T>C Tyr216Tyr
M0019868 EFLJDGHD_00006 5529 5 Skin 0.06 protein_coding synonymous_variant LOW 126T>C Ile42Ile
M0019869 EFLJDGHD_00007 5906 5 Skin 0.06 protein_coding synonymous_variant LOW 744G>A Gln248Gln
M0019870 EFLJDGHD_00007 6383 5 Skin 0.06 protein_coding synonymous_variant LOW 267A>C Ala89Ala
M0019871 EFLJDGHD_00007 6640 5 Skin 0.06 protein_coding missense_variant MODERATE 10G>A Gly4Arg
M0019872 EFLJDGHD_00011 12356 15 Skin 0.18 protein_coding synonymous_variant LOW 1737G>A Gln579Gln
M0019873 EFLJDGHD_00011 13877 10 Skin 0.12 protein_coding synonymous_variant LOW 216T>C Asp72Asp
M0019874 EFLJDGHD_00011 13998 11 Skin 0.13 protein_coding missense_variant MODERATE 95A>C Asn32Thr
M0019875 EFLJDGHD_00009 14273 15 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4863T>C None
M0019876 EFLJDGHD_00011 13922 7 Skin 0.08 protein_coding synonymous_variant LOW 171C>A Pro57Pro
M0019877 EFLJDGHD_00012 14682 6 Skin 0.07 protein_coding synonymous_variant LOW 246T>C Asn82Asn
M0019878 EFLJDGHD_00012 14688 5 Skin 0.06 protein_coding synonymous_variant LOW 252G>A Val84Val
M0019879 EFLJDGHD_00012 14733 5 Skin 0.06 protein_coding synonymous_variant LOW 297G>C Leu99Leu
M0019880 EFLJDGHD_00012 14739 6 Skin 0.07 protein_coding synonymous_variant LOW 303T>G Leu101Leu
M0019881 EFLJDGHD_00012 14763 6 Skin 0.07 protein_coding synonymous_variant LOW 327G>C Leu109Leu
M0019882 EFLJDGHD_00012 14766 6 Skin 0.07 protein_coding synonymous_variant LOW 330G>C Val110Val
M0019883 EFLJDGHD_00012 14777 19 Skin 0.23 protein_coding missense_variant MODERATE 341G>A Gly114Glu
M0019884 EFLJDGHD_00012 14778 3 Skin 0.04 protein_coding synonymous_variant LOW 342G>A Gly114Gly
M0019885 EFLJDGHD_00012 14789 19 Skin 0.23 protein_coding missense_variant MODERATE 353G>T Gly118Val
M0019886 EFLJDGHD_00012 14802 4 Skin 0.05 protein_coding synonymous_variant LOW 366G>T Leu122Leu
M0019887 EFLJDGHD_00012 14835 5 Skin 0.06 protein_coding synonymous_variant LOW 399A>C Thr133Thr
M0019888 EFLJDGHD_00012 14847 5 Skin 0.06 protein_coding synonymous_variant LOW 411C>G Ala137Ala
M0019889 EFLJDGHD_00012 14853 5 Skin 0.06 protein_coding synonymous_variant LOW 417C>G Leu139Leu
M0019890 EFLJDGHD_00012 14945 3 Skin 0.04 protein_coding missense_variant MODERATE 509G>A Gly170Asp
M0019891 EFLJDGHD_00012 15468 9 Skin 0.11 protein_coding synonymous_variant LOW 1032C>T Phe344Phe
M0019892 EFLJDGHD_00012 15594 8 Skin 0.10 protein_coding synonymous_variant LOW 1158C>G Ala386Ala
M0019893 EFLJDGHD_00012 15673 18 Skin 0.22 protein_coding missense_variant MODERATE 1237C>T Pro413Ser
M0019894 EFLJDGHD_00012 15792 4 Skin 0.05 protein_coding synonymous_variant LOW 1356A>G Ala452Ala
M0019895 EFLJDGHD_00012 15793 4 Skin 0.05 protein_coding missense_variant MODERATE 1357A>G Ser453Gly
M0019896 EFLJDGHD_00012 15802 3 Skin 0.04 protein_coding missense_variant MODERATE 1366T>G Phe456Val
M0019897 EFLJDGHD_00013 15969 4 Skin 0.05 protein_coding synonymous_variant LOW 63C>T Asp21Asp
M0019898 EFLJDGHD_00013 15987 4 Skin 0.05 protein_coding synonymous_variant LOW 81G>A Gln27Gln
M0019899 EFLJDGHD_00013 15989 4 Skin 0.05 protein_coding missense_variant MODERATE 83G>A Gly28Asp
M0019900 EFLJDGHD_00013 15991 4 Skin 0.05 protein_coding missense_variant MODERATE 85A>C Met29Leu
M0019901 EFLJDGHD_00013 15992 4 Skin 0.05 protein_coding missense_variant MODERATE 86T>A Met29Lys
M0019902 EFLJDGHD_00013 15993 4 Skin 0.05 protein_coding missense_variant MODERATE 87G>A Met29Ile
M0019903 EFLJDGHD_00013 15994 4 Skin 0.05 protein_coding missense_variant MODERATE 88C>A Leu30Met
M0019904 EFLJDGHD_00013 15996 4 Skin 0.05 protein_coding synonymous_variant LOW 90G>T Leu30Leu
M0019905 EFLJDGHD_00013 15999 4 Skin 0.05 protein_coding missense_variant MODERATE 93C>A Asp31Glu
M0019906 EFLJDGHD_00013 16047 5 Skin 0.06 protein_coding synonymous_variant LOW 141G>T Ala47Ala
M0019907 EFLJDGHD_00013 16048 5 Skin 0.06 protein_coding missense_variant MODERATE 142C>G Leu48Val
M0019908 EFLJDGHD_00013 16056 5 Skin 0.06 protein_coding synonymous_variant LOW 150T>C Asp50Asp
M0019909 EFLJDGHD_00013 16065 5 Skin 0.06 protein_coding synonymous_variant LOW 159C>T Asp53Asp
M0019910 EFLJDGHD_00013 16066 5 Skin 0.06 protein_coding missense_variant MODERATE 160C>T His54Tyr
M0019911 EFLJDGHD_00013 16068 5 Skin 0.06 protein_coding synonymous_variant LOW 162C>T His54His
M0019912 EFLJDGHD_00013 16133 5 Skin 0.06 protein_coding missense_variant MODERATE 227G>T Gly76Val
M0019913 EFLJDGHD_00012 14550 12 Skin 0.14 protein_coding synonymous_variant LOW 114C>G Arg38Arg
M0019914 EFLJDGHD_00012 14556 15 Skin 0.18 protein_coding synonymous_variant LOW 120G>T Leu40Leu
M0019915 EFLJDGHD_00012 14568 15 Skin 0.18 protein_coding synonymous_variant LOW 132T>C Asp44Asp
M0019916 EFLJDGHD_00012 15019 12 Skin 0.14 protein_coding missense_variant MODERATE 583T>A Cys195Ser
M0019917 EFLJDGHD_00012 15024 14 Skin 0.17 protein_coding synonymous_variant LOW 588C>G Pro196Pro
M0019918 EFLJDGHD_00012 15281 13 Skin 0.16 protein_coding missense_variant MODERATE 845G>C Gly282Ala
M0019919 EFLJDGHD_00012 15282 14 Skin 0.17 protein_coding synonymous_variant LOW 846C>G Gly282Gly
M0019920 EFLJDGHD_00012 15285 14 Skin 0.17 protein_coding synonymous_variant LOW 849C>G Arg283Arg
M0019921 EFLJDGHD_00012 15327 13 Skin 0.16 protein_coding synonymous_variant LOW 891C>T Leu297Leu
M0019922 EFLJDGHD_00012 15345 13 Skin 0.16 protein_coding synonymous_variant LOW 909G>T Leu303Leu
M0019923 EFLJDGHD_00012 15354 10 Skin 0.12 protein_coding synonymous_variant LOW 918C>T Ile306Ile
M0019924 EFLJDGHD_00012 15704 14 Skin 0.17 protein_coding missense_variant MODERATE 1268T>C Val423Ala
M0019925 EFLJDGHD_00012 15706 14 Skin 0.17 protein_coding missense_variant MODERATE 1270T>G Ser424Ala
M0019926 EFLJDGHD_00012 15738 12 Skin 0.14 protein_coding synonymous_variant LOW 1302C>T Phe434Phe
M0019927 EFLJDGHD_00012 15739 12 Skin 0.14 protein_coding missense_variant MODERATE 1303T>G Leu435Val
M0019928 EFLJDGHD_00012 15740 12 Skin 0.14 protein_coding missense_variant MODERATE 1304T>C Leu435Ser
M0019929 EFLJDGHD_00013 16224 13 Skin 0.16 protein_coding synonymous_variant LOW 318T>C Asn106Asn
M0019930 EFLJDGHD_00013 16233 13 Skin 0.16 protein_coding synonymous_variant LOW 327T>C Asp109Asp
M0019931 EFLJDGHD_00013 16234 13 Skin 0.16 protein_coding synonymous_variant LOW 328T>C Leu110Leu
M0019932 EFLJDGHD_00006 4950 3 Skin 0.04 protein_coding synonymous_variant LOW 705A>G Glu235Glu
M0019933 EFLJDGHD_00008 7117 5 Skin 0.06 protein_coding synonymous_variant LOW 630C>A Ala210Ala
M0019934 EFLJDGHD_00008 7231 3 Skin 0.04 protein_coding synonymous_variant LOW 516G>C Thr172Thr
M0019935 EFLJDGHD_00008 7309 7 Skin 0.08 protein_coding synonymous_variant LOW 438A>G Ala146Ala
M0019936 EFLJDGHD_00008 7684 5 Skin 0.06 protein_coding synonymous_variant LOW 63C>T Val21Val
M0019937 EFLJDGHD_00008 7687 5 Skin 0.06 protein_coding synonymous_variant LOW 60T>C Ser20Ser
M0019938 EFLJDGHD_00008 7699 5 Skin 0.06 protein_coding synonymous_variant LOW 48G>C Ala16Ala
M0019939 EFLJDGHD_00008 7513 4 Skin 0.05 protein_coding synonymous_variant LOW 234C>T Thr78Thr
M0019940 EFLJDGHD_00008 7564 3 Skin 0.04 protein_coding synonymous_variant LOW 183G>T Ala61Ala
M0019941 EFLJDGHD_00004 7773 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4058T>C None
M0019942 EFLJDGHD_00010 9867 4 Skin 0.05 protein_coding synonymous_variant LOW 1086T>C Ile362Ile
M0019943 EFLJDGHD_00011 11549 3 Skin 0.04 protein_coding synonymous_variant LOW 2544A>G Ala848Ala
M0019944 EFLJDGHD_00009 14141 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4731G>T None
M0019945 EFLJDGHD_00009 14156 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4746A>G None
M0019946 EFLJDGHD_00009 14171 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4761A>G None
M0019947 EFLJDGHD_00009 14173 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4763C>T None
M0019948 EFLJDGHD_00009 14197 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4787T>G None
M0019949 EFLJDGHD_00009 14211 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4801A>C None
M0019950 EFLJDGHD_00009 14227 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4817C>T None
M0019951 EFLJDGHD_00009 14228 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4818T>A None
M0019952 EFLJDGHD_00009 14229 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4819A>T None
M0019953 EFLJDGHD_00009 14246 12 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4836A>G None
M0019954 EFLJDGHD_00009 14251 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4841A>T None
M0019955 EFLJDGHD_00009 14305 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4895C>G None
M0019956 EFLJDGHD_00009 14307 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4897T>C None
M0019957 EFLJDGHD_00009 14316 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4906G>A None
M0019958 EFLJDGHD_00009 14335 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4925C>A None
M0019959 EFLJDGHD_00009 14361 13 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -4951G>C None
M0019960 EFLJDGHD_00009 14363 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4953A>G None
M0019961 EFLJDGHD_00009 14395 14 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -4985G>T None
M0019962 EFLJDGHD_00019 22132 3 Skin 0.04 protein_coding missense_variant MODERATE 68C>T Ala23Val
M0019963 EFLJDGHD_00020 24431 3 Skin 0.04 protein_coding synonymous_variant LOW 220T>C Leu74Leu
M0019964 EFLJDGHD_00020 24600 3 Skin 0.04 protein_coding synonymous_variant LOW 51A>G Lys17Lys
M0019965 EFLJDGHD_00001 268 3 Skin 0.04 protein_coding missense_variant MODERATE 827C>A Thr276Lys
M0019966 EFLJDGHD_00001 273 3 Skin 0.04 protein_coding synonymous_variant LOW 822C>G Gly274Gly
M0019967 EFLJDGHD_00001 280 3 Skin 0.04 protein_coding missense_variant MODERATE 815G>A Arg272Gln
M0019968 EFLJDGHD_00001 281 3 Skin 0.04 protein_coding missense_variant MODERATE 814C>G Arg272Gly
M0019969 EFLJDGHD_00001 289 3 Skin 0.04 protein_coding missense_variant MODERATE 806A>G Gln269Arg
M0019970 EFLJDGHD_00001 336 3 Skin 0.04 protein_coding synonymous_variant LOW 759G>C Ser253Ser
M0019971 EFLJDGHD_00001 354 3 Skin 0.04 protein_coding synonymous_variant LOW 741G>C Thr247Thr
M0019972 EFLJDGHD_00001 381 3 Skin 0.04 protein_coding synonymous_variant LOW 714G>C Ala238Ala
M0019973 EFLJDGHD_00001 420 3 Skin 0.04 protein_coding synonymous_variant LOW 675G>C Arg225Arg
M0019974 EFLJDGHD_00004 2801 3 Skin 0.04 protein_coding synonymous_variant LOW 915T>C Tyr305Tyr
M0019975 EFLJDGHD_00007 6245 6 Skin 0.07 protein_coding synonymous_variant LOW 405C>G Arg135Arg
M0019976 EFLJDGHD_00009 8973 5 Skin 0.06 protein_coding synonymous_variant LOW 438C>G Ala146Ala
M0019977 EFLJDGHD_00007 6302 3 Skin 0.04 protein_coding synonymous_variant LOW 348C>T Gly116Gly
M0019978 EFLJDGHD_00007 6303 3 Skin 0.04 protein_coding missense_variant MODERATE 347G>C Gly116Ala
M0019979 EFLJDGHD_00009 8241 5 Skin 0.06 protein_coding synonymous_variant LOW 1170G>T Gly390Gly
M0019980 EFLJDGHD_00011 12953 3 Skin 0.04 protein_coding synonymous_variant LOW 1140C>G Leu380Leu
M0019981 EFLJDGHD_00011 12965 3 Skin 0.04 protein_coding missense_variant MODERATE 1128C>G Ile376Met
M0019982 EFLJDGHD_00011 12967 3 Skin 0.04 protein_coding missense_variant MODERATE 1126A>T Ile376Phe
M0019983 EFLJDGHD_00011 13565 3 Skin 0.04 protein_coding synonymous_variant LOW 528A>G Ser176Ser
M0019984 EFLJDGHD_00011 13571 3 Skin 0.04 protein_coding synonymous_variant LOW 522T>C Ala174Ala
M0019985 EFLJDGHD_00012 15306 3 Skin 0.04 protein_coding synonymous_variant LOW 870G>C Arg290Arg
M0019986 EFLJDGHD_00001 502 3 Skin 0.04 protein_coding missense_variant MODERATE 593C>G Ala198Gly
M0019987 EFLJDGHD_00002 1283 3 Skin 0.04 protein_coding synonymous_variant LOW 411T>C Phe137Phe
M0019988 EFLJDGHD_00002 1312 3 Skin 0.04 protein_coding missense_variant MODERATE 382T>C Ser128Pro
M0019989 EFLJDGHD_00004 3428 5 Skin 0.06 protein_coding synonymous_variant LOW 288G>A Gly96Gly
M0019990 EFLJDGHD_00004 3518 4 Skin 0.05 protein_coding synonymous_variant LOW 198A>G Gly66Gly
M0019991 EFLJDGHD_00004 3572 4 Skin 0.05 protein_coding synonymous_variant LOW 144T>C Pro48Pro
M0019992 EFLJDGHD_00004 3596 4 Skin 0.05 protein_coding synonymous_variant LOW 120T>C Tyr40Tyr
M0019993 EFLJDGHD_00001 947 4 Skin 0.05 protein_coding missense_variant MODERATE 148C>A Gln50Lys
M0019994 EFLJDGHD_00009 8277 3 Skin 0.04 protein_coding synonymous_variant LOW 1134G>A Glu378Glu
M0019995 EFLJDGHD_00009 8331 3 Skin 0.04 protein_coding synonymous_variant LOW 1080C>G Gly360Gly
M0019996 EFLJDGHD_00009 8442 4 Skin 0.05 protein_coding synonymous_variant LOW 969T>C Asp323Asp
M0019997 EFLJDGHD_00009 8457 5 Skin 0.06 protein_coding synonymous_variant LOW 954C>A Gly318Gly
M0019998 EFLJDGHD_00007 5987 6 Skin 0.07 protein_coding synonymous_variant LOW 663G>A Pro221Pro
M0019999 EFLJDGHD_00007 6122 7 Skin 0.08 protein_coding synonymous_variant LOW 528T>C Phe176Phe
M0020000 EFLJDGHD_00007 6143 7 Skin 0.08 protein_coding synonymous_variant LOW 507A>G Ala169Ala
M0020001 EFLJDGHD_00007 6164 6 Skin 0.07 protein_coding synonymous_variant LOW 486C>T Phe162Phe
M0020002 EFLJDGHD_00008 6838 4 Skin 0.05 protein_coding synonymous_variant LOW 909C>G Ala303Ala
M0020003 EFLJDGHD_00008 6892 6 Skin 0.07 protein_coding synonymous_variant LOW 855G>C Ala285Ala
M0020004 EFLJDGHD_00008 6925 3 Skin 0.04 protein_coding synonymous_variant LOW 822T>C Tyr274Tyr
M0020005 EFLJDGHD_00008 7099 4 Skin 0.05 protein_coding synonymous_variant LOW 648A>G Glu216Glu
M0020006 EFLJDGHD_00008 7468 4 Skin 0.05 protein_coding synonymous_variant LOW 279C>G Gly93Gly
M0020007 EFLJDGHD_00004 7865 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4150A>C None
M0020008 EFLJDGHD_00004 8011 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4296T>C None
M0020009 EFLJDGHD_00004 8015 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4300C>G None
M0020010 EFLJDGHD_00004 8017 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4302T>C None
M0020011 EFLJDGHD_00004 8035 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -4320T>C None
M0020012 EFLJDGHD_00004 8077 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4362T>G None
M0020013 EFLJDGHD_00004 2906 3 Skin 0.04 protein_coding synonymous_variant LOW 810C>T Arg270Arg
M0020014 EFLJDGHD_00004 2915 3 Skin 0.04 protein_coding synonymous_variant LOW 801C>T Leu267Leu
M0020015 EFLJDGHD_00009 8814 4 Skin 0.05 protein_coding synonymous_variant LOW 597G>C Val199Val
M0020016 EFLJDGHD_00009 8838 4 Skin 0.05 protein_coding synonymous_variant LOW 573G>C Gly191Gly
M0020017 EFLJDGHD_00009 8864 4 Skin 0.05 protein_coding synonymous_variant LOW 547T>C Leu183Leu
M0020018 EFLJDGHD_00009 8892 4 Skin 0.05 protein_coding synonymous_variant LOW 519T>C Asn173Asn
M0020019 EFLJDGHD_00009 8904 4 Skin 0.05 protein_coding synonymous_variant LOW 507A>G Glu169Glu
M0020020 EFLJDGHD_00009 9039 9 Skin 0.11 protein_coding synonymous_variant LOW 372A>C Leu124Leu
M0020021 EFLJDGHD_00010 9999 4 Skin 0.05 protein_coding synonymous_variant LOW 954G>T Leu318Leu
M0020022 EFLJDGHD_00008 6793 4 Skin 0.05 protein_coding synonymous_variant LOW 954G>C Val318Val
M0020023 EFLJDGHD_00004 3197 3 Skin 0.04 protein_coding synonymous_variant LOW 519C>T Val173Val
M0020024 EFLJDGHD_00004 3205 3 Skin 0.04 protein_coding missense_variant MODERATE 511C>A Leu171Met
M0020025 EFLJDGHD_00004 3206 3 Skin 0.04 protein_coding synonymous_variant LOW 510G>C Val170Val
M0020026 EFLJDGHD_00009 9108 4 Skin 0.05 protein_coding synonymous_variant LOW 303A>G Thr101Thr
M0020027 EFLJDGHD_00009 9111 5 Skin 0.06 protein_coding synonymous_variant LOW 300C>G Val100Val
M0020028 EFLJDGHD_00009 9125 4 Skin 0.05 protein_coding missense_variant MODERATE 286C>T Arg96Trp
M0020029 EFLJDGHD_00025 29161 3 Skin 0.04 protein_coding synonymous_variant LOW 204G>C Val68Val
M0020030 EFLJDGHD_00026 30251 3 Skin 0.04 protein_coding missense_variant MODERATE 724G>C Gly242Arg
M0020031 EFLJDGHD_00026 30283 3 Skin 0.04 protein_coding missense_variant MODERATE 692T>C Val231Ala
M0020032 EFLJDGHD_00026 30337 3 Skin 0.04 protein_coding missense_variant MODERATE 638G>C Arg213Pro
M0020033 EFLJDGHD_00026 30342 3 Skin 0.04 protein_coding synonymous_variant LOW 633T>C Asp211Asp
M0020034 EFLJDGHD_00026 30372 3 Skin 0.04 protein_coding synonymous_variant LOW 603C>G Ala201Ala
M0020035 EFLJDGHD_00026 30381 3 Skin 0.04 protein_coding synonymous_variant LOW 594T>G Pro198Pro
M0020036 EFLJDGHD_00026 30579 3 Skin 0.04 protein_coding synonymous_variant LOW 396T>C Asp132Asp
M0020037 EFLJDGHD_00026 30630 3 Skin 0.04 protein_coding synonymous_variant LOW 345G>C Gly115Gly
M0020038 EFLJDGHD_00028 31602 3 Skin 0.04 protein_coding synonymous_variant LOW 105T>C Arg35Arg
M0020039 EFLJDGHD_00028 31614 4 Skin 0.05 protein_coding synonymous_variant LOW 117C>G Ala39Ala
M0020040 EFLJDGHD_00028 31884 3 Skin 0.04 protein_coding synonymous_variant LOW 387G>A Gly129Gly
M0020041 EFLJDGHD_00028 32220 3 Skin 0.04 protein_coding synonymous_variant LOW 723G>C Arg241Arg
M0020042 EFLJDGHD_00003 1728 5 Skin 0.06 protein_coding synonymous_variant LOW 477G>A Val159Val
M0020043 EFLJDGHD_00008 7702 3 Skin 0.04 protein_coding synonymous_variant LOW 45C>T Ala15Ala
M0020044 EFLJDGHD_00004 7880 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4165T>C None
M0020045 EFLJDGHD_00004 7906 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4191G>A None
M0020046 EFLJDGHD_00004 7920 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4205C>T None
M0020047 EFLJDGHD_00004 7930 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4215T>A None
M0020048 EFLJDGHD_00004 7947 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4232G>A None
M0020049 EFLJDGHD_00004 7951 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4236A>G None
M0020050 EFLJDGHD_00004 8005 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4290G>A None
M0020051 EFLJDGHD_00004 8034 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4319G>A None
M0020052 EFLJDGHD_00004 8037 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4322A>G None
M0020053 EFLJDGHD_00004 8057 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4342G>C None
M0020054 EFLJDGHD_00004 8058 5 Skin 0.06 protein_coding upstream_gene_variant MODIFIER -4343A>G None
M0020055 EFLJDGHD_00004 8065 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4350G>A None
M0020056 EFLJDGHD_00004 8071 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4356A>G None
M0020057 EFLJDGHD_00004 8081 3 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4366A>G None
M0020058 EFLJDGHD_00004 8102 4 Skin 0.05 protein_coding upstream_gene_variant MODIFIER -4387C>G None
M0020059 EFLJDGHD_00009 9357 6 Skin 0.07 protein_coding synonymous_variant LOW 54C>G Gly18Gly
M0020060 EFLJDGHD_00009 9388 3 Skin 0.04 protein_coding missense_variant MODERATE 23A>C Asp8Ala
M0020061 EFLJDGHD_00009 8709 3 Skin 0.04 protein_coding synonymous_variant LOW 702G>A Glu234Glu
M0020062 EFLJDGHD_00009 8712 3 Skin 0.04 protein_coding synonymous_variant LOW 699G>C Ala233Ala
M0020063 EFLJDGHD_00009 9128 3 Skin 0.04 protein_coding synonymous_variant LOW 283C>T Leu95Leu
M0020064 EFLJDGHD_00010 9801 3 Skin 0.04 protein_coding synonymous_variant LOW 1152G>A Gln384Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term