Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1941
  Reference Plasmid   1111525849668977_bin.24__k141_69557
  Reference Plasmid Size   60520
  Reference Plasmid GC Content   0.39
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0020265 HLNBAEBI_00022 20256 3 Skin 0.38 protein_coding synonymous_variant LOW 825A>C Ala275Ala
M0020266 HLNBAEBI_00022 20262 4 Skin 0.50 protein_coding synonymous_variant LOW 831T>C Gly277Gly
M0020267 HLNBAEBI_00022 20268 3 Skin 0.38 protein_coding synonymous_variant LOW 837T>C His279His
M0020268 HLNBAEBI_00022 20310 3 Skin 0.38 protein_coding synonymous_variant LOW 879A>G Ala293Ala
M0020269 HLNBAEBI_00022 20562 4 Skin 0.50 protein_coding synonymous_variant LOW 1131A>T Thr377Thr
M0020270 HLNBAEBI_00023 20910 4 Skin 0.50 protein_coding synonymous_variant LOW 252T>A Gly84Gly
M0020271 HLNBAEBI_00023 20928 5 Skin 0.63 protein_coding synonymous_variant LOW 270C>T Tyr90Tyr
M0020272 HLNBAEBI_00023 20997 3 Skin 0.38 protein_coding synonymous_variant LOW 339A>G Leu113Leu
M0020273 HLNBAEBI_00023 21174 3 Skin 0.38 protein_coding synonymous_variant LOW 516G>A Gln172Gln
M0020274 HLNBAEBI_00023 21651 3 Skin 0.38 protein_coding synonymous_variant LOW 993C>T Asn331Asn
M0020275 HLNBAEBI_00024 21800 5 Skin 0.63 protein_coding synonymous_variant LOW 99A>T Ser33Ser
M0020276 HLNBAEBI_00024 22055 3 Skin 0.38 protein_coding synonymous_variant LOW 354G>T Arg118Arg
M0020277 HLNBAEBI_00024 22081 4 Skin 0.50 protein_coding missense_variant MODERATE 380A>C Gln127Pro
M0020278 HLNBAEBI_00024 22094 4 Skin 0.50 protein_coding synonymous_variant LOW 393C>A Ala131Ala
M0020279 HLNBAEBI_00024 22133 4 Skin 0.50 protein_coding synonymous_variant LOW 432T>C Phe144Phe
M0020280 HLNBAEBI_00024 22172 4 Skin 0.50 protein_coding synonymous_variant LOW 471T>C His157His
M0020281 HLNBAEBI_00024 22185 4 Skin 0.50 protein_coding synonymous_variant LOW 484C>T Leu162Leu
M0020282 HLNBAEBI_00024 22220 4 Skin 0.50 protein_coding synonymous_variant LOW 519T>C Ser173Ser
M0020283 HLNBAEBI_00024 22229 4 Skin 0.50 protein_coding synonymous_variant LOW 528A>G Thr176Thr
M0020284 HLNBAEBI_00024 22428 4 Skin 0.50 protein_coding synonymous_variant LOW 727T>C Leu243Leu
M0020285 HLNBAEBI_00024 22581 5 Skin 0.63 protein_coding missense_variant MODERATE 880T>G Cys294Gly
M0020286 HLNBAEBI_00024 22697 5 Skin 0.63 protein_coding synonymous_variant LOW 996A>G Gln332Gln
M0020287 HLNBAEBI_00024 22805 4 Skin 0.50 protein_coding synonymous_variant LOW 1104G>C Val368Val
M0020288 HLNBAEBI_00024 22838 4 Skin 0.50 protein_coding synonymous_variant LOW 1137C>T Tyr379Tyr
M0020289 HLNBAEBI_00024 22886 5 Skin 0.63 protein_coding synonymous_variant LOW 1185G>A Ala395Ala
M0020290 HLNBAEBI_00025 23246 5 Skin 0.63 protein_coding synonymous_variant LOW 42T>A Pro14Pro
M0020291 HLNBAEBI_00025 23417 5 Skin 0.63 protein_coding synonymous_variant LOW 213A>G Pro71Pro
M0020292 HLNBAEBI_00025 23444 5 Skin 0.63 protein_coding synonymous_variant LOW 240C>T Gly80Gly
M0020293 HLNBAEBI_00025 23459 5 Skin 0.63 protein_coding synonymous_variant LOW 255G>C Val85Val
M0020294 HLNBAEBI_00025 23528 5 Skin 0.63 protein_coding synonymous_variant LOW 324C>T Thr108Thr
M0020295 HLNBAEBI_00025 23759 5 Skin 0.63 protein_coding synonymous_variant LOW 555T>A Gly185Gly
M0020296 HLNBAEBI_00025 23777 3 Skin 0.38 protein_coding synonymous_variant LOW 573A>T Val191Val
M0020297 HLNBAEBI_00025 23960 4 Skin 0.50 protein_coding synonymous_variant LOW 756A>G Val252Val
M0020298 HLNBAEBI_00025 24110 3 Skin 0.38 protein_coding synonymous_variant LOW 906A>G Glu302Glu
M0020299 HLNBAEBI_00025 24217 5 Skin 0.63 protein_coding missense_variant MODERATE 1013A>G Asn338Ser
M0020300 HLNBAEBI_00025 24395 5 Skin 0.63 protein_coding synonymous_variant LOW 1191A>G Lys397Lys
M0020301 HLNBAEBI_00025 24404 5 Skin 0.63 protein_coding synonymous_variant LOW 1200T>C Asn400Asn
M0020302 HLNBAEBI_00025 24413 5 Skin 0.63 protein_coding synonymous_variant LOW 1209C>T Val403Val
M0020303 HLNBAEBI_00025 24422 5 Skin 0.63 protein_coding synonymous_variant LOW 1218T>C His406His
M0020304 HLNBAEBI_00026 24556 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -85G>T None
M0020305 HLNBAEBI_00026 24564 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -77G>T None
M0020306 HLNBAEBI_00026 24568 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -73G>A None
M0020307 HLNBAEBI_00026 24589 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -52G>A None
M0020308 HLNBAEBI_00026 24600 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -41T>G None
M0020309 HLNBAEBI_00026 24603 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -38T>A None
M0020310 HLNBAEBI_00026 24605 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -36T>C None
M0020311 HLNBAEBI_00026 24742 3 Skin 0.38 protein_coding synonymous_variant LOW 102A>G Leu34Leu
M0020312 HLNBAEBI_00026 24796 5 Skin 0.63 protein_coding synonymous_variant LOW 156C>T Ile52Ile
M0020313 HLNBAEBI_00026 24979 4 Skin 0.50 protein_coding synonymous_variant LOW 339A>G Leu113Leu
M0020314 HLNBAEBI_00026 25000 4 Skin 0.50 protein_coding synonymous_variant LOW 360A>G Lys120Lys
M0020315 HLNBAEBI_00026 25495 5 Skin 0.63 protein_coding synonymous_variant LOW 855G>A Val285Val
M0020316 HLNBAEBI_00026 25501 3 Skin 0.38 protein_coding synonymous_variant LOW 861T>G Ala287Ala
M0020317 HLNBAEBI_00026 25511 5 Skin 0.63 protein_coding missense_variant MODERATE 871A>G Thr291Ala
M0020318 HLNBAEBI_00026 25531 3 Skin 0.38 protein_coding synonymous_variant LOW 891C>T Ser297Ser
M0020319 HLNBAEBI_00027 25698 5 Skin 0.63 protein_coding missense_variant MODERATE 37A>G Thr13Ala
M0020320 HLNBAEBI_00028 25797 5 Skin 0.63 protein_coding synonymous_variant LOW 9T>C Asn3Asn
M0020321 HLNBAEBI_00028 26241 5 Skin 0.63 protein_coding missense_variant MODERATE 453C>G His151Gln
M0020322 HLNBAEBI_00028 26511 4 Skin 0.50 protein_coding synonymous_variant LOW 723C>T Thr241Thr
M0020323 HLNBAEBI_00028 26613 3 Skin 0.38 protein_coding synonymous_variant LOW 825T>C Ala275Ala
M0020324 HLNBAEBI_00028 26619 3 Skin 0.38 protein_coding synonymous_variant LOW 831A>T Ile277Ile
M0020325 HLNBAEBI_00028 26688 4 Skin 0.50 protein_coding synonymous_variant LOW 900G>A Ala300Ala
M0020326 HLNBAEBI_00028 26946 5 Skin 0.63 protein_coding synonymous_variant LOW 1158T>A Pro386Pro
M0020327 HLNBAEBI_00028 27117 4 Skin 0.50 protein_coding synonymous_variant LOW 1329C>G Pro443Pro
M0020328 HLNBAEBI_00029 27351 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -76C>T None
M0020329 HLNBAEBI_00029 27489 5 Skin 0.63 protein_coding missense_variant MODERATE 63A>T Leu21Phe
M0020330 HLNBAEBI_00029 27492 3 Skin 0.38 protein_coding synonymous_variant LOW 66A>C Pro22Pro
M0020331 HLNBAEBI_00029 27627 3 Skin 0.38 protein_coding synonymous_variant LOW 201T>C Ile67Ile
M0020332 HLNBAEBI_00029 27652 4 Skin 0.50 protein_coding missense_variant MODERATE 226G>C Val76Leu
M0020333 HLNBAEBI_00029 27856 3 Skin 0.38 protein_coding synonymous_variant LOW 430T>C Leu144Leu
M0020334 HLNBAEBI_00029 27882 3 Skin 0.38 protein_coding synonymous_variant LOW 456A>T Thr152Thr
M0020335 HLNBAEBI_00029 27885 4 Skin 0.50 protein_coding synonymous_variant LOW 459T>C Ile153Ile
M0020336 HLNBAEBI_00029 27894 4 Skin 0.50 protein_coding synonymous_variant LOW 468T>G Ala156Ala
M0020337 HLNBAEBI_00029 27940 3 Skin 0.38 protein_coding synonymous_variant LOW 514C>T Leu172Leu
M0020338 HLNBAEBI_00029 27942 3 Skin 0.38 protein_coding synonymous_variant LOW 516G>A Leu172Leu
M0020339 HLNBAEBI_00030 28547 3 Skin 0.38 protein_coding missense_variant MODERATE 1141A>G Ser381Gly
M0020340 HLNBAEBI_00030 28862 3 Skin 0.38 protein_coding synonymous_variant LOW 826C>T Leu276Leu
M0020341 HLNBAEBI_00030 28863 3 Skin 0.38 protein_coding synonymous_variant LOW 825T>C Gly275Gly
M0020342 HLNBAEBI_00030 28878 3 Skin 0.38 protein_coding synonymous_variant LOW 810C>T Pro270Pro
M0020343 HLNBAEBI_00030 28902 3 Skin 0.38 protein_coding synonymous_variant LOW 786C>T Tyr262Tyr
M0020344 HLNBAEBI_00030 28908 3 Skin 0.38 protein_coding synonymous_variant LOW 780A>G Lys260Lys
M0020345 HLNBAEBI_00030 28911 3 Skin 0.38 protein_coding synonymous_variant LOW 777G>A Gly259Gly
M0020346 HLNBAEBI_00030 28915 3 Skin 0.38 protein_coding missense_variant MODERATE 773C>G Thr258Ser
M0020347 HLNBAEBI_00030 29201 4 Skin 0.50 protein_coding missense_variant MODERATE 487G>A Gly163Ser
M0020348 HLNBAEBI_00030 29202 3 Skin 0.38 protein_coding synonymous_variant LOW 486T>C Thr162Thr
M0020349 HLNBAEBI_00030 29208 4 Skin 0.50 protein_coding synonymous_variant LOW 480A>G Gln160Gln
M0020350 HLNBAEBI_00030 29223 3 Skin 0.38 protein_coding synonymous_variant LOW 465T>C Tyr155Tyr
M0020351 HLNBAEBI_00031 30357 4 Skin 0.50 protein_coding synonymous_variant LOW 240A>G Ala80Ala
M0020352 HLNBAEBI_00031 30404 4 Skin 0.50 protein_coding missense_variant MODERATE 287C>T Ala96Val
M0020353 HLNBAEBI_00030 30883 5 Skin 0.63 protein_coding upstream_gene_variant MODIFIER -1196T>C None
M0020354 HLNBAEBI_00033 31751 5 Skin 0.63 protein_coding missense_variant MODERATE 179G>C Arg60Thr
M0020355 HLNBAEBI_00033 32001 4 Skin 0.50 protein_coding synonymous_variant LOW 429G>T Gly143Gly
M0020356 HLNBAEBI_00033 32007 4 Skin 0.50 protein_coding synonymous_variant LOW 435C>A Ala145Ala
M0020357 HLNBAEBI_00033 32010 4 Skin 0.50 protein_coding synonymous_variant LOW 438G>A Leu146Leu
M0020358 HLNBAEBI_00033 32108 4 Skin 0.50 protein_coding missense_variant MODERATE 536T>C Val179Ala
M0020359 HLNBAEBI_00033 32113 4 Skin 0.50 protein_coding missense_variant MODERATE 541C>A Leu181Ile
M0020360 HLNBAEBI_00033 32115 4 Skin 0.50 protein_coding synonymous_variant LOW 543C>A Leu181Leu
M0020361 HLNBAEBI_00034 32280 4 Skin 0.50 protein_coding stop_lost&splice_region_variant HIGH 172T>G Ter58Gluext*?
M0020362 HLNBAEBI_00034 32323 4 Skin 0.50 protein_coding synonymous_variant LOW 129T>C Ala43Ala
M0020363 HLNBAEBI_00034 32419 4 Skin 0.50 protein_coding synonymous_variant LOW 33T>A Leu11Leu
M0020364 HLNBAEBI_00030 32478 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2791T>C None
M0020365 HLNBAEBI_00035 32633 4 Skin 0.50 protein_coding synonymous_variant LOW 126A>G Gly42Gly
M0020366 HLNBAEBI_00014 10929 3 Skin 0.38 protein_coding synonymous_variant LOW 1761T>C Ile587Ile
M0020367 HLNBAEBI_00014 11529 3 Skin 0.38 protein_coding synonymous_variant LOW 1161C>T Ala387Ala
M0020368 HLNBAEBI_00014 11582 3 Skin 0.38 protein_coding missense_variant MODERATE 1108C>G Leu370Val
M0020369 HLNBAEBI_00014 11594 3 Skin 0.38 protein_coding missense_variant MODERATE 1096A>G Ile366Val
M0020370 HLNBAEBI_00014 11712 3 Skin 0.38 protein_coding synonymous_variant LOW 978T>C Gly326Gly
M0020371 HLNBAEBI_00014 12186 3 Skin 0.38 protein_coding synonymous_variant LOW 504A>G Thr168Thr
M0020372 HLNBAEBI_00014 12258 3 Skin 0.38 protein_coding synonymous_variant LOW 432T>C Ala144Ala
M0020373 HLNBAEBI_00013 12744 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2537C>T None
M0020374 HLNBAEBI_00018 16060 3 Skin 0.38 protein_coding missense_variant MODERATE 376C>G Leu126Val
M0020375 HLNBAEBI_00018 16104 3 Skin 0.38 protein_coding synonymous_variant LOW 420A>G Val140Val
M0020376 HLNBAEBI_00018 16211 3 Skin 0.38 protein_coding missense_variant MODERATE 527G>A Arg176Lys
M0020377 HLNBAEBI_00018 16221 3 Skin 0.38 protein_coding synonymous_variant LOW 537A>T Ile179Ile
M0020378 HLNBAEBI_00018 16230 3 Skin 0.38 protein_coding synonymous_variant LOW 546A>T Pro182Pro
M0020379 HLNBAEBI_00018 16234 3 Skin 0.38 protein_coding missense_variant MODERATE 550T>G Ser184Ala
M0020380 HLNBAEBI_00018 16235 3 Skin 0.38 protein_coding missense_variant MODERATE 551C>T Ser184Leu
M0020381 HLNBAEBI_00018 16236 3 Skin 0.38 protein_coding synonymous_variant LOW 552A>T Ser184Ser
M0020382 HLNBAEBI_00018 16242 3 Skin 0.38 protein_coding synonymous_variant LOW 558T>C Ile186Ile
M0020383 HLNBAEBI_00018 16248 3 Skin 0.38 protein_coding synonymous_variant LOW 564T>C Asn188Asn
M0020384 HLNBAEBI_00018 16254 3 Skin 0.38 protein_coding synonymous_variant LOW 570G>A Val190Val
M0020385 HLNBAEBI_00018 16268 3 Skin 0.38 protein_coding missense_variant MODERATE 584A>C Asp195Ala
M0020386 HLNBAEBI_00019 16963 3 Skin 0.38 protein_coding synonymous_variant LOW 99T>C Ser33Ser
M0020387 HLNBAEBI_00014 17310 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4621T>C None
M0020388 HLNBAEBI_00014 17332 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4643T>A None
M0020389 HLNBAEBI_00014 17357 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4668T>C None
M0020390 HLNBAEBI_00014 17358 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4669T>C None
M0020391 HLNBAEBI_00014 17367 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4678G>A None
M0020392 HLNBAEBI_00014 17368 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4679T>C None
M0020393 HLNBAEBI_00020 17471 3 Skin 0.38 protein_coding missense_variant MODERATE 374T>G Val125Gly
M0020394 HLNBAEBI_00020 17494 3 Skin 0.38 protein_coding synonymous_variant LOW 351A>G Leu117Leu
M0020395 HLNBAEBI_00020 17992 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -148C>T None
M0020396 HLNBAEBI_00021 18196 3 Skin 0.38 protein_coding missense_variant MODERATE 119T>C Met40Thr
M0020397 HLNBAEBI_00021 18560 3 Skin 0.38 protein_coding synonymous_variant LOW 483G>T Gly161Gly
M0020398 HLNBAEBI_00021 18602 3 Skin 0.38 protein_coding synonymous_variant LOW 525C>T Val175Val
M0020399 HLNBAEBI_00021 18605 3 Skin 0.38 protein_coding synonymous_variant LOW 528A>G Thr176Thr
M0020400 HLNBAEBI_00021 18617 3 Skin 0.38 protein_coding synonymous_variant LOW 540A>T Thr180Thr
M0020401 HLNBAEBI_00021 18674 3 Skin 0.38 protein_coding synonymous_variant LOW 597C>T Gly199Gly
M0020402 HLNBAEBI_00021 19214 3 Skin 0.38 protein_coding synonymous_variant LOW 1137A>G Lys379Lys
M0020403 HLNBAEBI_00022 19869 3 Skin 0.38 protein_coding synonymous_variant LOW 438T>C Thr146Thr
M0020404 HLNBAEBI_00022 20083 3 Skin 0.38 protein_coding missense_variant MODERATE 652T>G Cys218Gly
M0020405 HLNBAEBI_00022 20217 3 Skin 0.38 protein_coding synonymous_variant LOW 786T>C Gly262Gly
M0020406 HLNBAEBI_00022 20229 3 Skin 0.38 protein_coding synonymous_variant LOW 798G>A Thr266Thr
M0020407 HLNBAEBI_00022 20409 3 Skin 0.38 protein_coding synonymous_variant LOW 978G>A Gln326Gln
M0020408 HLNBAEBI_00024 21863 3 Skin 0.38 protein_coding synonymous_variant LOW 162C>T Pro54Pro
M0020409 HLNBAEBI_00024 22985 4 Skin 0.50 protein_coding synonymous_variant LOW 1284T>C Gly428Gly
M0020410 HLNBAEBI_00025 24489 4 Skin 0.50 protein_coding synonymous_variant LOW 1285C>T Leu429Leu
M0020411 HLNBAEBI_00026 24597 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -44A>T None
M0020412 HLNBAEBI_00026 24614 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -27G>A None
M0020413 HLNBAEBI_00026 25222 3 Skin 0.38 protein_coding synonymous_variant LOW 582T>G Thr194Thr
M0020414 HLNBAEBI_00026 25255 4 Skin 0.50 protein_coding synonymous_variant LOW 615A>T Ala205Ala
M0020415 HLNBAEBI_00026 25264 4 Skin 0.50 protein_coding synonymous_variant LOW 624C>T Ser208Ser
M0020416 HLNBAEBI_00026 25371 4 Skin 0.50 protein_coding missense_variant MODERATE 731G>A Arg244Gln
M0020417 HLNBAEBI_00026 25373 4 Skin 0.50 protein_coding synonymous_variant LOW 733A>C Arg245Arg
M0020418 HLNBAEBI_00026 25383 4 Skin 0.50 protein_coding missense_variant MODERATE 743A>C Glu248Ala
M0020419 HLNBAEBI_00026 25582 3 Skin 0.38 protein_coding synonymous_variant LOW 942A>G Leu314Leu
M0020420 HLNBAEBI_00028 26256 4 Skin 0.50 protein_coding synonymous_variant LOW 468C>T Ser156Ser
M0020421 HLNBAEBI_00028 26322 4 Skin 0.50 protein_coding synonymous_variant LOW 534C>G Thr178Thr
M0020422 HLNBAEBI_00028 26355 3 Skin 0.38 protein_coding synonymous_variant LOW 567C>A Ser189Ser
M0020423 HLNBAEBI_00028 26515 3 Skin 0.38 protein_coding synonymous_variant LOW 727T>C Leu243Leu
M0020424 HLNBAEBI_00028 26562 3 Skin 0.38 protein_coding synonymous_variant LOW 774T>G Ala258Ala
M0020425 HLNBAEBI_00030 29689 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0020426 HLNBAEBI_00033 31861 3 Skin 0.38 protein_coding synonymous_variant LOW 289C>T Leu97Leu
M0020427 HLNBAEBI_00033 31869 3 Skin 0.38 protein_coding synonymous_variant LOW 297C>T Gly99Gly
M0020428 HLNBAEBI_00033 31896 3 Skin 0.38 protein_coding synonymous_variant LOW 324A>T Arg108Arg
M0020429 HLNBAEBI_00035 33011 3 Skin 0.38 protein_coding synonymous_variant LOW 504A>G Gln168Gln
M0020430 HLNBAEBI_00035 33083 3 Skin 0.38 protein_coding synonymous_variant LOW 576C>A Ala192Ala
M0020431 HLNBAEBI_00035 33245 3 Skin 0.38 protein_coding synonymous_variant LOW 738A>G Gly246Gly
M0020432 HLNBAEBI_00035 33276 3 Skin 0.38 protein_coding missense_variant MODERATE 769G>A Val257Ile
M0020433 HLNBAEBI_00035 33293 3 Skin 0.38 protein_coding missense_variant MODERATE 786G>C Gln262His
M0020434 HLNBAEBI_00035 33329 3 Skin 0.38 protein_coding synonymous_variant LOW 822G>T Gly274Gly
M0020435 HLNBAEBI_00035 33359 3 Skin 0.38 protein_coding synonymous_variant LOW 852A>G Leu284Leu
M0020436 HLNBAEBI_00036 34000 4 Skin 0.50 protein_coding missense_variant MODERATE 854G>A Ser285Asn
M0020437 HLNBAEBI_00036 34271 4 Skin 0.50 protein_coding missense_variant MODERATE 583C>G Pro195Ala
M0020438 HLNBAEBI_00036 34410 3 Skin 0.38 protein_coding synonymous_variant LOW 444C>T Asn148Asn
M0020439 HLNBAEBI_00036 34467 3 Skin 0.38 protein_coding synonymous_variant LOW 387G>A Ala129Ala
M0020440 HLNBAEBI_00036 34470 3 Skin 0.38 protein_coding synonymous_variant LOW 384T>A Pro128Pro
M0020441 HLNBAEBI_00036 34494 3 Skin 0.38 protein_coding synonymous_variant LOW 360T>A Ala120Ala
M0020442 HLNBAEBI_00036 34497 3 Skin 0.38 protein_coding synonymous_variant LOW 357C>T Ile119Ile
M0020443 HLNBAEBI_00036 34521 3 Skin 0.38 protein_coding synonymous_variant LOW 333G>A Val111Val
M0020444 HLNBAEBI_00036 34671 4 Skin 0.50 protein_coding synonymous_variant LOW 183C>T Asn61Asn
M0020445 HLNBAEBI_00036 34674 4 Skin 0.50 protein_coding synonymous_variant LOW 180C>T Leu60Leu
M0020446 HLNBAEBI_00036 34707 4 Skin 0.50 protein_coding synonymous_variant LOW 147T>C Arg49Arg
M0020447 HLNBAEBI_00034 35047 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2596T>C None
M0020448 HLNBAEBI_00037 35535 4 Skin 0.50 protein_coding synonymous_variant LOW 405T>C Asn135Asn
M0020449 HLNBAEBI_00037 35778 4 Skin 0.50 protein_coding synonymous_variant LOW 648T>C Gly216Gly
M0020450 HLNBAEBI_00037 36008 3 Skin 0.38 protein_coding missense_variant MODERATE 878A>G Asp293Gly
M0020451 HLNBAEBI_00037 36036 4 Skin 0.50 protein_coding synonymous_variant LOW 906G>A Ser302Ser
M0020452 HLNBAEBI_00037 36049 4 Skin 0.50 protein_coding missense_variant MODERATE 919A>G Lys307Glu
M0020453 HLNBAEBI_00037 36054 4 Skin 0.50 protein_coding synonymous_variant LOW 924T>C Asn308Asn
M0020454 HLNBAEBI_00037 36080 3 Skin 0.38 protein_coding missense_variant MODERATE 950A>G Lys317Arg
M0020455 HLNBAEBI_00037 36112 4 Skin 0.50 protein_coding missense_variant MODERATE 982G>A Asp328Asn
M0020456 HLNBAEBI_00037 36122 4 Skin 0.50 protein_coding missense_variant MODERATE 992A>C Asp331Ala
M0020457 HLNBAEBI_00037 36123 4 Skin 0.50 protein_coding synonymous_variant LOW 993T>C Asp331Asp
M0020458 HLNBAEBI_00037 36129 4 Skin 0.50 protein_coding synonymous_variant LOW 999T>C Val333Val
M0020459 HLNBAEBI_00038 36282 3 Skin 0.38 protein_coding synonymous_variant LOW 120T>G Ser40Ser
M0020460 HLNBAEBI_00038 36367 4 Skin 0.50 protein_coding missense_variant MODERATE 205G>T Val69Leu
M0020461 HLNBAEBI_00038 36423 3 Skin 0.38 protein_coding synonymous_variant LOW 261T>A Pro87Pro
M0020462 HLNBAEBI_00038 36447 3 Skin 0.38 protein_coding synonymous_variant LOW 285C>T Ile95Ile
M0020463 HLNBAEBI_00038 36468 4 Skin 0.50 protein_coding synonymous_variant LOW 306A>G Lys102Lys
M0020464 HLNBAEBI_00038 36501 3 Skin 0.38 protein_coding synonymous_variant LOW 339A>T Val113Val
M0020465 HLNBAEBI_00038 36662 3 Skin 0.38 protein_coding missense_variant MODERATE 500C>T Thr167Ile
M0020466 HLNBAEBI_00038 36795 3 Skin 0.38 protein_coding synonymous_variant LOW 633A>C Gly211Gly
M0020467 HLNBAEBI_00038 36801 3 Skin 0.38 protein_coding synonymous_variant LOW 639C>T Ile213Ile
M0020468 HLNBAEBI_00038 36822 3 Skin 0.38 protein_coding synonymous_variant LOW 660T>C Asp220Asp
M0020469 HLNBAEBI_00038 36909 4 Skin 0.50 protein_coding synonymous_variant LOW 747A>G Glu249Glu
M0020470 HLNBAEBI_00038 36912 4 Skin 0.50 protein_coding synonymous_variant LOW 750C>T Arg250Arg
M0020471 HLNBAEBI_00038 36913 4 Skin 0.50 protein_coding synonymous_variant LOW 751C>T Leu251Leu
M0020472 HLNBAEBI_00038 36915 4 Skin 0.50 protein_coding synonymous_variant LOW 753A>G Leu251Leu
M0020473 HLNBAEBI_00038 36918 4 Skin 0.50 protein_coding synonymous_variant LOW 756A>T Arg252Arg
M0020474 HLNBAEBI_00039 37035 3 Skin 0.38 protein_coding missense_variant MODERATE 85G>A Gly29Arg
M0020475 HLNBAEBI_00039 37064 4 Skin 0.50 protein_coding synonymous_variant LOW 114T>G Ala38Ala
M0020476 HLNBAEBI_00039 37118 4 Skin 0.50 protein_coding synonymous_variant LOW 168T>C Ile56Ile
M0020477 HLNBAEBI_00039 37133 4 Skin 0.50 protein_coding synonymous_variant LOW 183A>T Thr61Thr
M0020478 HLNBAEBI_00039 37143 3 Skin 0.38 protein_coding missense_variant MODERATE 193A>G Ile65Val
M0020479 HLNBAEBI_00039 37259 4 Skin 0.50 protein_coding synonymous_variant LOW 309T>G Ser103Ser
M0020480 HLNBAEBI_00039 37322 3 Skin 0.38 protein_coding synonymous_variant LOW 372C>T Gly124Gly
M0020481 HLNBAEBI_00039 37340 4 Skin 0.50 protein_coding synonymous_variant LOW 390C>T Arg130Arg
M0020482 HLNBAEBI_00039 37343 4 Skin 0.50 protein_coding synonymous_variant LOW 393C>G Ala131Ala
M0020483 HLNBAEBI_00039 37453 4 Skin 0.50 protein_coding missense_variant MODERATE 503C>T Ser168Phe
M0020484 HLNBAEBI_00039 37460 4 Skin 0.50 protein_coding synonymous_variant LOW 510C>A Ser170Ser
M0020485 HLNBAEBI_00039 37481 3 Skin 0.38 protein_coding synonymous_variant LOW 531C>T Ile177Ile
M0020486 HLNBAEBI_00039 37490 4 Skin 0.50 protein_coding synonymous_variant LOW 540G>T Thr180Thr
M0020487 HLNBAEBI_00039 37595 3 Skin 0.38 protein_coding synonymous_variant LOW 645G>A Pro215Pro
M0020488 HLNBAEBI_00039 37634 3 Skin 0.38 protein_coding synonymous_variant LOW 684C>G Gly228Gly
M0020489 HLNBAEBI_00039 37670 4 Skin 0.50 protein_coding synonymous_variant LOW 720C>A Ala240Ala
M0020490 HLNBAEBI_00040 37869 3 Skin 0.38 protein_coding synonymous_variant LOW 21G>T Val7Val
M0020491 HLNBAEBI_00040 37959 4 Skin 0.50 protein_coding synonymous_variant LOW 111T>G Leu37Leu
M0020492 HLNBAEBI_00040 37997 3 Skin 0.38 protein_coding missense_variant MODERATE 149T>C Val50Ala
M0020493 HLNBAEBI_00040 38343 3 Skin 0.38 protein_coding synonymous_variant LOW 495C>T Asp165Asp
M0020494 HLNBAEBI_00040 38364 3 Skin 0.38 protein_coding synonymous_variant LOW 516A>G Glu172Glu
M0020495 HLNBAEBI_00041 39004 3 Skin 0.38 protein_coding synonymous_variant LOW 198A>G Ala66Ala
M0020496 HLNBAEBI_00041 39058 3 Skin 0.38 protein_coding synonymous_variant LOW 144A>G Val48Val
M0020497 HLNBAEBI_00043 40101 3 Skin 0.38 protein_coding synonymous_variant LOW 309T>C Ile103Ile
M0020498 HLNBAEBI_00043 40161 3 Skin 0.38 protein_coding synonymous_variant LOW 369T>A Ala123Ala
M0020499 HLNBAEBI_00043 40173 3 Skin 0.38 protein_coding synonymous_variant LOW 381T>C Arg127Arg
M0020500 HLNBAEBI_00044 40477 3 Skin 0.38 protein_coding synonymous_variant LOW 147C>T Thr49Thr
M0020501 HLNBAEBI_00041 40633 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -1432T>G None
M0020502 HLNBAEBI_00045 40789 3 Skin 0.38 protein_coding synonymous_variant LOW 39A>G Glu13Glu
M0020503 HLNBAEBI_00045 40978 3 Skin 0.38 protein_coding synonymous_variant LOW 228T>C Ala76Ala
M0020504 HLNBAEBI_00045 40999 3 Skin 0.38 protein_coding synonymous_variant LOW 249A>G Val83Val
M0020505 HLNBAEBI_00045 41023 3 Skin 0.38 protein_coding synonymous_variant LOW 273G>A Glu91Glu
M0020506 HLNBAEBI_00045 41032 3 Skin 0.38 protein_coding missense_variant MODERATE 282A>T Gln94His
M0020507 HLNBAEBI_00041 41245 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2044T>A None
M0020508 HLNBAEBI_00041 41253 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2052G>C None
M0020509 HLNBAEBI_00022 19758 3 Skin 0.38 protein_coding synonymous_variant LOW 327G>C Ala109Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
HLNBAEBI_00014 Copper (Cu), Gold (Au) 75.2 1.49999999999523e-313 74 818 0.9052 0.9777 experiment
HLNBAEBI_00014 Copper (Cu), Gold (Au) 88 0 6 823 0.9939 0.9879 prediction
HLNBAEBI_00036 Chromium (Cr) 99.3 3e-253 1 447 1.0000 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
HLNBAEBI_00011 2.A.1.3.62 87.2 3.5e-256 1 506 0.9961 0.9980 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.1 The Major Facilitator Superfamily (MFS)
HLNBAEBI_00014 3.A.3.5.20 75.2 5.6000000000003e-312 74 818 0.9052 0.9764 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.3 The P-type ATPase (P-ATPase) Superfamily
HLNBAEBI_00036 2.A.51.1.4 70.6 9.8e-178 10 445 0.9754 0.9582 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.51 The Chromate Ion Transporter (CHR) Family