Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C1955
  Reference Plasmid   1111525849670115_bin.4__k141_24109
  Reference Plasmid Size   11438
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0020663 JDMJAMHL_00010 8437 82 Skin 0.41 protein_coding synonymous_variant LOW 171C>T Leu57Leu
M0020664 JDMJAMHL_00010 8689 81 Skin 0.41 protein_coding synonymous_variant LOW 423C>T Thr141Thr
M0020665 JDMJAMHL_00010 8785 85 Skin 0.43 protein_coding synonymous_variant LOW 519A>G Gly173Gly
M0020666 JDMJAMHL_00010 8794 85 Skin 0.43 protein_coding synonymous_variant LOW 528A>G Arg176Arg
M0020667 JDMJAMHL_00010 8833 84 Skin 0.42 protein_coding synonymous_variant LOW 567A>G Glu189Glu
M0020668 JDMJAMHL_00010 8888 89 Skin 0.45 protein_coding missense_variant MODERATE 622A>G Asn208Asp
M0020669 JDMJAMHL_00010 8946 83 Skin 0.42 protein_coding missense_variant MODERATE 680C>T Thr227Met
M0020670 JDMJAMHL_00010 8968 84 Skin 0.42 protein_coding synonymous_variant LOW 702T>C Thr234Thr
M0020671 JDMJAMHL_00010 8975 85 Skin 0.43 protein_coding synonymous_variant LOW 709T>C Leu237Leu
M0020672 JDMJAMHL_00010 8983 85 Skin 0.43 protein_coding synonymous_variant LOW 717A>G Gly239Gly
M0020673 JDMJAMHL_00010 8987 86 Skin 0.43 protein_coding missense_variant MODERATE 721C>A Leu241Ile
M0020674 JDMJAMHL_00011 9156 87 Skin 0.44 protein_coding synonymous_variant LOW 162T>C Tyr54Tyr
M0020675 JDMJAMHL_00011 9183 86 Skin 0.43 protein_coding synonymous_variant LOW 189T>C Thr63Thr
M0020676 JDMJAMHL_00011 9193 86 Skin 0.43 protein_coding missense_variant MODERATE 199A>G Thr67Ala
M0020677 JDMJAMHL_00011 9209 86 Skin 0.43 protein_coding missense_variant MODERATE 215G>A Arg72His
M0020678 JDMJAMHL_00011 9249 81 Skin 0.41 protein_coding synonymous_variant LOW 255G>A Ser85Ser
M0020679 JDMJAMHL_00011 9397 76 Skin 0.38 protein_coding missense_variant MODERATE 403A>G Thr135Ala
M0020680 JDMJAMHL_00011 9780 66 Skin 0.33 protein_coding synonymous_variant LOW 786C>T Pro262Pro
M0020681 JDMJAMHL_00011 9903 72 Skin 0.36 protein_coding synonymous_variant LOW 909A>G Ser303Ser
M0020682 JDMJAMHL_00011 10171 71 Skin 0.36 protein_coding missense_variant MODERATE 1177T>G Ser393Ala
M0020683 JDMJAMHL_00011 10272 70 Skin 0.35 protein_coding missense_variant MODERATE 1278A>G Ile426Met
M0020684 JDMJAMHL_00011 10274 33 Skin 0.17 protein_coding missense_variant MODERATE 1280A>G His427Arg
M0020685 JDMJAMHL_00011 10380 48 Skin 0.24 protein_coding synonymous_variant LOW 1386A>C Val462Val
M0020686 JDMJAMHL_00011 10519 42 Skin 0.21 protein_coding missense_variant MODERATE 1525G>A Asp509Asn
M0020687 JDMJAMHL_00011 10554 54 Skin 0.27 protein_coding synonymous_variant LOW 1560C>T Pro520Pro
M0020688 JDMJAMHL_00011 10563 44 Skin 0.22 protein_coding synonymous_variant LOW 1569A>G Lys523Lys
M0020689 JDMJAMHL_00011 10741 56 Skin 0.28 protein_coding missense_variant MODERATE 1747A>G Thr583Ala
M0020690 JDMJAMHL_00011 10820 57 Skin 0.29 protein_coding missense_variant MODERATE 1826G>A Arg609Gln
M0020691 JDMJAMHL_00011 10914 44 Skin 0.22 protein_coding synonymous_variant LOW 1920A>T Arg640Arg
M0020692 JDMJAMHL_00011 10944 42 Skin 0.21 protein_coding synonymous_variant LOW 1950C>T Tyr650Tyr
M0020693 JDMJAMHL_00011 10964 55 Skin 0.28 protein_coding missense_variant MODERATE 1970G>A Gly657Asp
M0020694 JDMJAMHL_00011 11059 41 Skin 0.21 protein_coding missense_variant MODERATE 2065G>T Ala689Ser
M0020695 JDMJAMHL_00011 11079 41 Skin 0.21 protein_coding synonymous_variant LOW 2085T>C Leu695Leu
M0020696 JDMJAMHL_00011 11214 11 Skin 0.06 protein_coding synonymous_variant LOW 2220G>A Glu740Glu
M0020697 JDMJAMHL_00011 11285 48 Skin 0.24 protein_coding missense_variant MODERATE 2291G>A Arg764Gln
M0020698 JDMJAMHL_00011 10345 64 Skin 0.32 protein_coding missense_variant MODERATE 1351A>G Ile451Val
M0020699 JDMJAMHL_00011 10667 49 Skin 0.25 protein_coding missense_variant MODERATE 1673A>G Gln558Arg
M0020700 JDMJAMHL_00011 11187 36 Skin 0.18 protein_coding synonymous_variant LOW 2193G>A Arg731Arg
M0020701 JDMJAMHL_00011 11205 36 Skin 0.18 protein_coding synonymous_variant LOW 2211C>T Pro737Pro
M0020702 JDMJAMHL_00008 7711 5 Skin 0.03 protein_coding missense_variant MODERATE 217G>A Val73Ile
M0020703 JDMJAMHL_00010 8268 63 Skin 0.32 protein_coding missense_variant MODERATE 2T>C Val1Ala
M0020704 JDMJAMHL_00011 9619 6 Skin 0.03 protein_coding missense_variant MODERATE 625T>C Ser209Pro
M0020705 JDMJAMHL_00011 9758 47 Skin 0.24 protein_coding missense_variant MODERATE 764T>C Val255Ala
M0020706 JDMJAMHL_00011 9794 47 Skin 0.24 protein_coding missense_variant MODERATE 800T>G Ile267Ser
M0020707 JDMJAMHL_00006 6044 17 Skin 0.09 protein_coding synonymous_variant LOW 1257A>G Glu419Glu
M0020708 JDMJAMHL_00006 6047 17 Skin 0.09 protein_coding synonymous_variant LOW 1260C>G Gly420Gly
M0020709 JDMJAMHL_00006 6101 18 Skin 0.09 protein_coding synonymous_variant LOW 1314C>T Leu438Leu
M0020710 JDMJAMHL_00006 6134 18 Skin 0.09 protein_coding synonymous_variant LOW 1347G>A Ser449Ser
M0020711 JDMJAMHL_00006 6137 25 Skin 0.13 protein_coding synonymous_variant LOW 1350T>C Cys450Cys
M0020712 JDMJAMHL_00005 6310 43 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -1582G>A None
M0020713 JDMJAMHL_00007 6379 17 Skin 0.09 protein_coding missense_variant MODERATE 25G>A Ala9Thr
M0020714 JDMJAMHL_00007 6409 19 Skin 0.10 protein_coding missense_variant MODERATE 55G>A Val19Ile
M0020715 JDMJAMHL_00007 6469 48 Skin 0.24 protein_coding missense_variant MODERATE 115A>G Thr39Ala
M0020716 JDMJAMHL_00007 6492 48 Skin 0.24 protein_coding synonymous_variant LOW 138C>T Pro46Pro
M0020717 JDMJAMHL_00007 6624 105 Skin 0.53 protein_coding synonymous_variant LOW 270C>A Gly90Gly
M0020718 JDMJAMHL_00007 6639 27 Skin 0.14 protein_coding synonymous_variant LOW 285T>C Gly95Gly
M0020719 JDMJAMHL_00005 7342 128 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -2614C>T None
M0020720 JDMJAMHL_00008 7661 30 Skin 0.15 protein_coding missense_variant MODERATE 167C>T Ala56Val
M0020721 JDMJAMHL_00010 8559 78 Skin 0.39 protein_coding missense_variant MODERATE 293A>G Asn98Ser
M0020722 JDMJAMHL_00010 8568 78 Skin 0.39 protein_coding missense_variant MODERATE 302G>A Arg101Gln
M0020723 JDMJAMHL_00007 6576 50 Skin 0.25 protein_coding synonymous_variant LOW 222T>G Thr74Thr
M0020724 JDMJAMHL_00007 6597 50 Skin 0.25 protein_coding synonymous_variant LOW 243C>G Ala81Ala
M0020725 JDMJAMHL_00007 6627 50 Skin 0.25 protein_coding synonymous_variant LOW 273C>G Arg91Arg
M0020726 JDMJAMHL_00007 6669 31 Skin 0.16 protein_coding synonymous_variant LOW 315C>T Gly105Gly
M0020727 JDMJAMHL_00007 6676 31 Skin 0.16 protein_coding missense_variant MODERATE 322A>G Asn108Asp
M0020728 JDMJAMHL_00007 6681 31 Skin 0.16 protein_coding synonymous_variant LOW 327C>T His109His
M0020729 JDMJAMHL_00007 6684 31 Skin 0.16 protein_coding synonymous_variant LOW 330T>C Gly110Gly
M0020730 JDMJAMHL_00007 6690 31 Skin 0.16 protein_coding synonymous_variant LOW 336C>T Pro112Pro
M0020731 JDMJAMHL_00007 6732 32 Skin 0.16 protein_coding synonymous_variant LOW 378C>T Ala126Ala
M0020732 JDMJAMHL_00007 6855 42 Skin 0.21 protein_coding synonymous_variant LOW 501A>G Thr167Thr
M0020733 JDMJAMHL_00007 6905 60 Skin 0.30 protein_coding missense_variant MODERATE 551G>A Gly184Asp
M0020734 JDMJAMHL_00007 6907 59 Skin 0.30 protein_coding missense_variant MODERATE 553A>G Thr185Ala
M0020735 JDMJAMHL_00005 6970 59 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2242G>A None
M0020736 JDMJAMHL_00005 7004 59 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2276T>C None
M0020737 JDMJAMHL_00005 7057 60 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2329C>T None
M0020738 JDMJAMHL_00005 7108 55 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -2380T>C None
M0020739 JDMJAMHL_00005 7116 55 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -2388G>A None
M0020740 JDMJAMHL_00005 7135 55 Skin 0.28 protein_coding upstream_gene_variant MODIFIER -2407C>A None
M0020741 JDMJAMHL_00005 7183 58 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2455C>T None
M0020742 JDMJAMHL_00005 7205 59 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2477A>G None
M0020743 JDMJAMHL_00005 7320 58 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2592T>C None
M0020744 JDMJAMHL_00005 7336 58 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2608T>C None
M0020745 JDMJAMHL_00005 7419 42 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2691G>T None
M0020746 JDMJAMHL_00005 7494 60 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2766C>T None
M0020747 JDMJAMHL_00008 7504 41 Skin 0.21 protein_coding missense_variant MODERATE 10T>C Ser4Pro
M0020748 JDMJAMHL_00008 7539 60 Skin 0.30 protein_coding synonymous_variant LOW 45T>C Cys15Cys
M0020749 JDMJAMHL_00008 7544 60 Skin 0.30 protein_coding missense_variant MODERATE 50A>G Gln17Arg
M0020750 JDMJAMHL_00008 7584 62 Skin 0.31 protein_coding synonymous_variant LOW 90G>A Arg30Arg
M0020751 JDMJAMHL_00008 7678 71 Skin 0.36 protein_coding missense_variant MODERATE 184C>T His62Tyr
M0020752 JDMJAMHL_00008 7769 67 Skin 0.34 protein_coding missense_variant MODERATE 275G>A Arg92His
M0020753 JDMJAMHL_00008 7774 67 Skin 0.34 protein_coding missense_variant MODERATE 280T>C Ser94Pro
M0020754 JDMJAMHL_00008 7776 67 Skin 0.34 protein_coding synonymous_variant LOW 282C>T Ser94Ser
M0020755 JDMJAMHL_00008 7781 28 Skin 0.14 protein_coding stop_lost&splice_region_variant HIGH 287G>T Ter96Leuext*?
M0020756 JDMJAMHL_00005 7791 68 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -3063T>C None
M0020757 JDMJAMHL_00005 7800 53 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3072C>A None
M0020758 JDMJAMHL_00005 7810 67 Skin 0.34 protein_coding upstream_gene_variant MODIFIER -3082G>A None
M0020759 JDMJAMHL_00005 7854 73 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3126A>G None
M0020760 JDMJAMHL_00005 7868 73 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3140C>T None
M0020761 JDMJAMHL_00005 7872 73 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3144T>A None
M0020762 JDMJAMHL_00005 7879 73 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3151C>T None
M0020763 JDMJAMHL_00005 7930 73 Skin 0.37 protein_coding upstream_gene_variant MODIFIER -3202G>A None
M0020764 JDMJAMHL_00009 8071 51 Skin 0.26 protein_coding missense_variant MODERATE 43A>G Ser15Gly
M0020765 JDMJAMHL_00009 8115 51 Skin 0.26 protein_coding synonymous_variant LOW 87C>T Gly29Gly
M0020766 JDMJAMHL_00011 9051 57 Skin 0.29 protein_coding synonymous_variant LOW 57T>C Arg19Arg
M0020767 JDMJAMHL_00011 9978 46 Skin 0.23 protein_coding synonymous_variant LOW 984C>T Gly328Gly
M0020768 JDMJAMHL_00011 10546 11 Skin 0.06 protein_coding missense_variant MODERATE 1552A>G Ser518Gly
M0020769 JDMJAMHL_00011 10585 9 Skin 0.05 protein_coding missense_variant MODERATE 1591G>A Ala531Thr
M0020770 JDMJAMHL_00008 7719 44 Skin 0.22 protein_coding synonymous_variant LOW 225G>A Glu75Glu
M0020771 JDMJAMHL_00008 7731 43 Skin 0.22 protein_coding synonymous_variant LOW 237G>A Val79Val
M0020772 JDMJAMHL_00008 7737 43 Skin 0.22 protein_coding stop_gained HIGH 243G>A Trp81*
M0020773 JDMJAMHL_00008 7738 43 Skin 0.22 protein_coding missense_variant MODERATE 244T>C Phe82Leu
M0020774 JDMJAMHL_00008 7745 43 Skin 0.22 protein_coding missense_variant MODERATE 251T>C Val84Ala
M0020775 JDMJAMHL_00011 10711 38 Skin 0.19 protein_coding synonymous_variant LOW 1717C>T Leu573Leu
M0020776 JDMJAMHL_00011 10729 38 Skin 0.19 protein_coding missense_variant MODERATE 1735A>G Thr579Ala
M0020777 JDMJAMHL_00005 6253 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1525T>A None
M0020778 JDMJAMHL_00005 6254 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1526G>A None
M0020779 JDMJAMHL_00005 6279 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1551G>A None
M0020780 JDMJAMHL_00005 6281 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1553T>G None
M0020781 JDMJAMHL_00005 6282 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1554T>C None
M0020782 JDMJAMHL_00005 6303 17 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1575A>G None
M0020783 JDMJAMHL_00005 6312 23 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1584G>A None
M0020784 JDMJAMHL_00007 6382 27 Skin 0.14 protein_coding missense_variant MODERATE 28G>A Ala10Thr
M0020785 JDMJAMHL_00007 6384 27 Skin 0.14 protein_coding synonymous_variant LOW 30A>C Ala10Ala
M0020786 JDMJAMHL_00007 6387 27 Skin 0.14 protein_coding synonymous_variant LOW 33T>G Ser11Ser
M0020787 JDMJAMHL_00007 6444 29 Skin 0.15 protein_coding synonymous_variant LOW 90C>G Thr30Thr
M0020788 JDMJAMHL_00007 6465 29 Skin 0.15 protein_coding synonymous_variant LOW 111C>G Val37Val
M0020789 JDMJAMHL_00007 6471 29 Skin 0.15 protein_coding synonymous_variant LOW 117G>C Thr39Thr
M0020790 JDMJAMHL_00007 6477 29 Skin 0.15 protein_coding synonymous_variant LOW 123C>A Val41Val
M0020791 JDMJAMHL_00007 6480 29 Skin 0.15 protein_coding synonymous_variant LOW 126T>G Thr42Thr
M0020792 JDMJAMHL_00007 6483 29 Skin 0.15 protein_coding synonymous_variant LOW 129C>G Thr43Thr
M0020793 JDMJAMHL_00007 6515 29 Skin 0.15 protein_coding missense_variant MODERATE 161G>A Ser54Asn
M0020794 JDMJAMHL_00007 6518 29 Skin 0.15 protein_coding missense_variant MODERATE 164A>G Asn55Ser
M0020795 JDMJAMHL_00007 6522 29 Skin 0.15 protein_coding synonymous_variant LOW 168C>T His56His
M0020796 JDMJAMHL_00007 6540 29 Skin 0.15 protein_coding synonymous_variant LOW 186G>A Ser62Ser
M0020797 JDMJAMHL_00007 6543 29 Skin 0.15 protein_coding synonymous_variant LOW 189A>G Ala63Ala
M0020798 JDMJAMHL_00007 6585 31 Skin 0.16 protein_coding synonymous_variant LOW 231C>T Val77Val
M0020799 JDMJAMHL_00007 6606 31 Skin 0.16 protein_coding synonymous_variant LOW 252C>G Ala84Ala
M0020800 JDMJAMHL_00011 9105 20 Skin 0.10 protein_coding synonymous_variant LOW 111C>T Tyr37Tyr
M0020801 JDMJAMHL_00011 10895 10 Skin 0.05 protein_coding missense_variant MODERATE 1901C>G Ala634Gly
M0020802 JDMJAMHL_00011 10905 9 Skin 0.05 protein_coding missense_variant MODERATE 1911A>C Glu637Asp
M0020803 JDMJAMHL_00005 7308 4 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2580C>T None
M0020804 JDMJAMHL_00005 7846 21 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -3118T>C None
M0020805 JDMJAMHL_00010 8619 6 Skin 0.03 protein_coding missense_variant MODERATE 353C>T Ala118Val
M0020806 JDMJAMHL_00011 10234 15 Skin 0.08 protein_coding missense_variant MODERATE 1240C>T Leu414Phe
M0020807 JDMJAMHL_00011 10278 14 Skin 0.07 protein_coding synonymous_variant LOW 1284T>C Gly428Gly
M0020808 JDMJAMHL_00011 10368 12 Skin 0.06 protein_coding synonymous_variant LOW 1374T>C Gly458Gly
M0020809 JDMJAMHL_00009 8107 9 Skin 0.05 protein_coding missense_variant MODERATE 79A>G Lys27Glu
M0020810 JDMJAMHL_00009 8114 7 Skin 0.04 protein_coding missense_variant MODERATE 86G>A Gly29Asp
M0020811 JDMJAMHL_00006 6125 7 Skin 0.04 protein_coding synonymous_variant LOW 1338A>G Val446Val
M0020812 JDMJAMHL_00006 6128 7 Skin 0.04 protein_coding synonymous_variant LOW 1341T>C Arg447Arg
M0020813 JDMJAMHL_00006 6143 7 Skin 0.04 protein_coding synonymous_variant LOW 1356C>T Tyr452Tyr
M0020814 JDMJAMHL_00006 6149 7 Skin 0.04 protein_coding synonymous_variant LOW 1362A>G Gly454Gly
M0020815 JDMJAMHL_00006 6152 7 Skin 0.04 protein_coding synonymous_variant LOW 1365T>C Ala455Ala
M0020816 JDMJAMHL_00006 6155 7 Skin 0.04 protein_coding synonymous_variant LOW 1368T>C Ala456Ala
M0020817 JDMJAMHL_00006 6158 7 Skin 0.04 protein_coding synonymous_variant LOW 1371T>C Asn457Asn
M0020818 JDMJAMHL_00006 6164 7 Skin 0.04 protein_coding synonymous_variant LOW 1377G>C Thr459Thr
M0020819 JDMJAMHL_00006 6167 7 Skin 0.04 protein_coding synonymous_variant LOW 1380A>G Glu460Glu
M0020820 JDMJAMHL_00006 6172 7 Skin 0.04 protein_coding missense_variant MODERATE 1385A>G His462Arg
M0020821 JDMJAMHL_00006 6173 7 Skin 0.04 protein_coding synonymous_variant LOW 1386T>C His462His
M0020822 JDMJAMHL_00005 8005 14 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -3277C>T None
M0020823 JDMJAMHL_00008 7759 14 Skin 0.07 protein_coding missense_variant MODERATE 265T>C Ser89Pro
M0020824 JDMJAMHL_00005 7326 17 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -2598A>G None
M0020825 JDMJAMHL_00010 8444 14 Skin 0.07 protein_coding missense_variant MODERATE 178G>A Gly60Arg
M0020826 JDMJAMHL_00011 10572 20 Skin 0.10 protein_coding synonymous_variant LOW 1578C>G Pro526Pro
M0020827 JDMJAMHL_00011 10630 5 Skin 0.03 protein_coding missense_variant MODERATE 1636G>A Gly546Ser
M0020828 JDMJAMHL_00011 10069 10 Skin 0.05 protein_coding missense_variant MODERATE 1075A>G Met359Val
M0020829 JDMJAMHL_00011 10136 13 Skin 0.07 protein_coding missense_variant MODERATE 1142G>A Gly381Asp
M0020830 JDMJAMHL_00011 10155 13 Skin 0.07 protein_coding synonymous_variant LOW 1161A>G Thr387Thr
M0020831 JDMJAMHL_00004 3086 7 Skin 0.04 protein_coding missense_variant MODERATE 404A>T Glu135Val
M0020832 JDMJAMHL_00004 3216 8 Skin 0.04 protein_coding synonymous_variant LOW 534A>G Ser178Ser
M0020833 JDMJAMHL_00006 5238 11 Skin 0.06 protein_coding missense_variant MODERATE 451G>A Val151Ile
M0020834 JDMJAMHL_00002 1115 3 Skin 0.02 protein_coding missense_variant MODERATE 285G>C Met95Ile
M0020835 JDMJAMHL_00002 1157 6 Skin 0.03 protein_coding missense_variant MODERATE 327A>C Leu109Phe
M0020836 JDMJAMHL_00002 1214 3 Skin 0.02 protein_coding synonymous_variant LOW 384A>G Pro128Pro
M0020837 JDMJAMHL_00002 1227 3 Skin 0.02 protein_coding missense_variant MODERATE 397C>T Pro133Ser
M0020838 JDMJAMHL_00002 1556 3 Skin 0.02 protein_coding synonymous_variant LOW 726A>G Leu242Leu
M0020839 JDMJAMHL_00002 1593 3 Skin 0.02 protein_coding missense_variant MODERATE 763G>A Val255Ile
M0020840 JDMJAMHL_00003 1991 3 Skin 0.02 protein_coding missense_variant MODERATE 361A>G Thr121Ala
M0020841 JDMJAMHL_00003 2008 3 Skin 0.02 protein_coding synonymous_variant LOW 378T>C Phe126Phe
M0020842 JDMJAMHL_00003 2056 3 Skin 0.02 protein_coding synonymous_variant LOW 426C>T Arg142Arg
M0020843 JDMJAMHL_00003 2086 3 Skin 0.02 protein_coding synonymous_variant LOW 456T>C Ala152Ala
M0020844 JDMJAMHL_00003 2473 3 Skin 0.02 protein_coding synonymous_variant LOW 843C>T His281His
M0020845 JDMJAMHL_00003 2510 3 Skin 0.02 protein_coding synonymous_variant LOW 880T>C Leu294Leu
M0020846 JDMJAMHL_00003 2513 3 Skin 0.02 protein_coding missense_variant MODERATE 883G>A Gly295Ser
M0020847 JDMJAMHL_00004 3174 3 Skin 0.02 protein_coding synonymous_variant LOW 492T>C Gly164Gly
M0020848 JDMJAMHL_00004 3462 3 Skin 0.02 protein_coding synonymous_variant LOW 780C>T Arg260Arg
M0020849 JDMJAMHL_00004 3612 4 Skin 0.02 protein_coding synonymous_variant LOW 930C>T Gly310Gly
M0020850 JDMJAMHL_00004 3663 4 Skin 0.02 protein_coding synonymous_variant LOW 981T>C Gly327Gly
M0020851 JDMJAMHL_00004 3690 4 Skin 0.02 protein_coding synonymous_variant LOW 1008G>A Glu336Glu
M0020852 JDMJAMHL_00004 3705 4 Skin 0.02 protein_coding synonymous_variant LOW 1023C>T His341His
M0020853 JDMJAMHL_00004 3726 4 Skin 0.02 protein_coding synonymous_variant LOW 1044C>T Ile348Ile
M0020854 JDMJAMHL_00004 3735 4 Skin 0.02 protein_coding synonymous_variant LOW 1053T>C Pro351Pro
M0020855 JDMJAMHL_00004 3771 4 Skin 0.02 protein_coding synonymous_variant LOW 1089A>G Leu363Leu
M0020856 JDMJAMHL_00004 3864 3 Skin 0.02 protein_coding synonymous_variant LOW 1182G>A Ala394Ala
M0020857 JDMJAMHL_00004 4053 4 Skin 0.02 protein_coding synonymous_variant LOW 1371T>C Arg457Arg
M0020858 JDMJAMHL_00004 4274 7 Skin 0.04 protein_coding missense_variant MODERATE 1592C>A Thr531Lys
M0020859 JDMJAMHL_00004 4343 6 Skin 0.03 protein_coding missense_variant MODERATE 1661A>G Gln554Arg
M0020860 JDMJAMHL_00006 4390 6 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -398C>G None
M0020861 JDMJAMHL_00005 4453 8 Skin 0.04 protein_coding synonymous_variant LOW 276T>C Ala92Ala
M0020862 JDMJAMHL_00005 4462 7 Skin 0.04 protein_coding synonymous_variant LOW 267G>C Pro89Pro
M0020863 JDMJAMHL_00005 4606 6 Skin 0.03 protein_coding missense_variant MODERATE 123C>G Ile41Met
M0020864 JDMJAMHL_00006 4910 7 Skin 0.04 protein_coding synonymous_variant LOW 123T>C Gly41Gly
M0020865 JDMJAMHL_00006 4997 7 Skin 0.04 protein_coding synonymous_variant LOW 210G>T Ala70Ala
M0020866 JDMJAMHL_00006 5018 7 Skin 0.04 protein_coding synonymous_variant LOW 231A>G Pro77Pro
M0020867 JDMJAMHL_00006 5021 7 Skin 0.04 protein_coding synonymous_variant LOW 234A>G Ala78Ala
M0020868 JDMJAMHL_00006 5023 3 Skin 0.02 protein_coding missense_variant MODERATE 236A>T Asp79Val
M0020869 JDMJAMHL_00006 5081 7 Skin 0.04 protein_coding synonymous_variant LOW 294G>A Pro98Pro
M0020870 JDMJAMHL_00006 5135 8 Skin 0.04 protein_coding synonymous_variant LOW 348A>G Lys116Lys
M0020871 JDMJAMHL_00006 5210 10 Skin 0.05 protein_coding synonymous_variant LOW 423C>T Gly141Gly
M0020872 JDMJAMHL_00006 5239 6 Skin 0.03 protein_coding missense_variant MODERATE 452T>G Val151Gly
M0020873 JDMJAMHL_00006 5525 14 Skin 0.07 protein_coding synonymous_variant LOW 738C>T Ala246Ala
M0020874 JDMJAMHL_00006 5560 14 Skin 0.07 protein_coding missense_variant MODERATE 773A>G Glu258Gly
M0020875 JDMJAMHL_00006 5684 11 Skin 0.06 protein_coding synonymous_variant LOW 897T>C Ile299Ile
M0020876 JDMJAMHL_00006 5867 15 Skin 0.08 protein_coding synonymous_variant LOW 1080A>G Gly360Gly
M0020877 JDMJAMHL_00006 5894 9 Skin 0.05 protein_coding synonymous_variant LOW 1107G>A Ala369Ala
M0020878 JDMJAMHL_00006 5924 14 Skin 0.07 protein_coding synonymous_variant LOW 1137C>T Leu379Leu
M0020879 JDMJAMHL_00005 7134 5 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2406A>G None
M0020880 JDMJAMHL_00010 8865 4 Skin 0.02 protein_coding missense_variant MODERATE 599A>C Glu200Ala
M0020881 JDMJAMHL_00010 8558 4 Skin 0.02 protein_coding missense_variant MODERATE 292A>G Asn98Asp
M0020882 JDMJAMHL_00010 8569 4 Skin 0.02 protein_coding synonymous_variant LOW 303A>G Arg101Arg
M0020883 JDMJAMHL_00010 8599 4 Skin 0.02 protein_coding synonymous_variant LOW 333C>T Phe111Phe
M0020884 JDMJAMHL_00005 7253 7 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -2525C>G None
M0020885 JDMJAMHL_00005 7783 7 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -3055G>A None
M0020886 JDMJAMHL_00009 8116 8 Skin 0.04 protein_coding missense_variant MODERATE 88A>G Thr30Ala
M0020887 JDMJAMHL_00005 7040 3 Skin 0.02 protein_coding upstream_gene_variant MODIFIER -2312G>A None
M0020888 JDMJAMHL_00004 2891 3 Skin 0.02 protein_coding missense_variant MODERATE 209T>C Val70Ala
M0020889 JDMJAMHL_00010 8670 5 Skin 0.03 protein_coding missense_variant MODERATE 404C>T Thr135Ile
M0020890 JDMJAMHL_00011 9404 3 Skin 0.02 protein_coding missense_variant MODERATE 410A>G His137Arg
M0020891 JDMJAMHL_00011 9440 3 Skin 0.02 protein_coding missense_variant MODERATE 446A>G Glu149Gly
M0020892 JDMJAMHL_00010 8653 4 Skin 0.02 protein_coding synonymous_variant LOW 387C>T Pro129Pro
M0020893 JDMJAMHL_00010 8662 4 Skin 0.02 protein_coding synonymous_variant LOW 396G>A Ala132Ala
M0020894 JDMJAMHL_00010 8396 3 Skin 0.02 protein_coding missense_variant MODERATE 130A>G Asn44Asp
M0020895 JDMJAMHL_00010 8398 3 Skin 0.02 protein_coding synonymous_variant LOW 132C>T Asn44Asn
M0020896 JDMJAMHL_00010 8401 3 Skin 0.02 protein_coding synonymous_variant LOW 135C>T Asn45Asn
M0020897 JDMJAMHL_00010 8425 3 Skin 0.02 protein_coding synonymous_variant LOW 159T>C Ser53Ser
M0020898 JDMJAMHL_00010 8442 3 Skin 0.02 protein_coding missense_variant MODERATE 176T>C Met59Thr
M0020899 JDMJAMHL_00010 8458 4 Skin 0.02 protein_coding synonymous_variant LOW 192A>G Ser64Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term