Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2011
  Reference Plasmid   1111525849736936_bin.26__k141_302511
  Reference Plasmid Size   52927
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0022279 OEJCMJKM_00004 9460 7 Skin 0.17 protein_coding synonymous_variant LOW 99A>G Pro33Pro
M0022280 OEJCMJKM_00005 10262 7 Skin 0.17 protein_coding synonymous_variant LOW 1956C>T Ile652Ile
M0022281 OEJCMJKM_00005 10424 10 Skin 0.24 protein_coding synonymous_variant LOW 1794T>C Tyr598Tyr
M0022282 OEJCMJKM_00005 10616 5 Skin 0.12 protein_coding synonymous_variant LOW 1602G>T Pro534Pro
M0022283 OEJCMJKM_00005 10685 4 Skin 0.10 protein_coding synonymous_variant LOW 1533C>T Gly511Gly
M0022284 OEJCMJKM_00005 11006 8 Skin 0.20 protein_coding synonymous_variant LOW 1212T>C Arg404Arg
M0022285 OEJCMJKM_00013 19290 12 Skin 0.29 protein_coding missense_variant MODERATE 688T>G Ser230Ala
M0022286 OEJCMJKM_00002 6042 4 Skin 0.10 protein_coding synonymous_variant LOW 108G>A Glu36Glu
M0022287 OEJCMJKM_00004 7645 3 Skin 0.07 protein_coding synonymous_variant LOW 1914G>A Pro638Pro
M0022288 OEJCMJKM_00004 7993 3 Skin 0.07 protein_coding synonymous_variant LOW 1566G>A Arg522Arg
M0022289 OEJCMJKM_00004 8254 3 Skin 0.07 protein_coding synonymous_variant LOW 1305A>G Glu435Glu
M0022290 OEJCMJKM_00004 8317 3 Skin 0.07 protein_coding synonymous_variant LOW 1242T>C Asp414Asp
M0022291 OEJCMJKM_00004 8452 3 Skin 0.07 protein_coding synonymous_variant LOW 1107A>G Glu369Glu
M0022292 OEJCMJKM_00004 8455 3 Skin 0.07 protein_coding synonymous_variant LOW 1104G>A Ala368Ala
M0022293 OEJCMJKM_00004 8479 3 Skin 0.07 protein_coding synonymous_variant LOW 1080T>A Thr360Thr
M0022294 OEJCMJKM_00004 8515 3 Skin 0.07 protein_coding synonymous_variant LOW 1044C>T Asp348Asp
M0022295 OEJCMJKM_00004 8526 3 Skin 0.07 protein_coding missense_variant MODERATE 1033G>C Glu345Gln
M0022296 OEJCMJKM_00004 8755 3 Skin 0.07 protein_coding synonymous_variant LOW 804C>T Val268Val
M0022297 OEJCMJKM_00004 8896 5 Skin 0.12 protein_coding synonymous_variant LOW 663A>G Pro221Pro
M0022298 OEJCMJKM_00004 8914 5 Skin 0.12 protein_coding synonymous_variant LOW 645T>C Asn215Asn
M0022299 OEJCMJKM_00004 8950 5 Skin 0.12 protein_coding synonymous_variant LOW 609G>T Ser203Ser
M0022300 OEJCMJKM_00004 9187 3 Skin 0.07 protein_coding synonymous_variant LOW 372C>T Asn124Asn
M0022301 OEJCMJKM_00005 10487 6 Skin 0.15 protein_coding synonymous_variant LOW 1731C>T Arg577Arg
M0022302 OEJCMJKM_00005 10496 6 Skin 0.15 protein_coding synonymous_variant LOW 1722C>T Thr574Thr
M0022303 OEJCMJKM_00005 11110 12 Skin 0.29 protein_coding synonymous_variant LOW 1108C>T Leu370Leu
M0022304 OEJCMJKM_00005 10826 9 Skin 0.22 protein_coding synonymous_variant LOW 1392T>C Arg464Arg
M0022305 OEJCMJKM_00005 11240 8 Skin 0.20 protein_coding synonymous_variant LOW 978T>G Val326Val
M0022306 OEJCMJKM_00005 11243 8 Skin 0.20 protein_coding synonymous_variant LOW 975T>C Gly325Gly
M0022307 OEJCMJKM_00014 20952 3 Skin 0.07 protein_coding synonymous_variant LOW 57C>A Ile19Ile
M0022308 OEJCMJKM_00011 21094 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3012T>C None
M0022309 OEJCMJKM_00011 21099 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3017A>G None
M0022310 OEJCMJKM_00011 21103 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3021C>T None
M0022311 OEJCMJKM_00011 21109 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3027C>G None
M0022312 OEJCMJKM_00011 21125 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3043A>G None
M0022313 OEJCMJKM_00011 21126 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3044A>G None
M0022314 OEJCMJKM_00011 21155 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3073G>A None
M0022315 OEJCMJKM_00011 21172 5 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3090G>A None
M0022316 OEJCMJKM_00016 25183 4 Skin 0.10 protein_coding synonymous_variant LOW 15C>T Asn5Asn
M0022317 OEJCMJKM_00010 15895 3 Skin 0.07 protein_coding synonymous_variant LOW 795C>G Ser265Ser
M0022318 OEJCMJKM_00010 15932 3 Skin 0.07 protein_coding synonymous_variant LOW 832C>T Leu278Leu
M0022319 OEJCMJKM_00010 15937 3 Skin 0.07 protein_coding synonymous_variant LOW 837C>T Arg279Arg
M0022320 OEJCMJKM_00010 15946 3 Skin 0.07 protein_coding synonymous_variant LOW 846C>T Cys282Cys
M0022321 OEJCMJKM_00010 15955 3 Skin 0.07 protein_coding synonymous_variant LOW 855C>T Leu285Leu
M0022322 OEJCMJKM_00010 15982 3 Skin 0.07 protein_coding synonymous_variant LOW 882C>T Val294Val
M0022323 OEJCMJKM_00010 15994 3 Skin 0.07 protein_coding synonymous_variant LOW 894T>C Cys298Cys
M0022324 OEJCMJKM_00010 16018 3 Skin 0.07 protein_coding synonymous_variant LOW 918A>G Lys306Lys
M0022325 OEJCMJKM_00010 16021 3 Skin 0.07 protein_coding synonymous_variant LOW 921G>T Leu307Leu
M0022326 OEJCMJKM_00010 16024 3 Skin 0.07 protein_coding synonymous_variant LOW 924C>T Gly308Gly
M0022327 OEJCMJKM_00010 16039 3 Skin 0.07 protein_coding synonymous_variant LOW 939G>A Leu313Leu
M0022328 OEJCMJKM_00004 9280 3 Skin 0.07 protein_coding synonymous_variant LOW 279C>T Ser93Ser
M0022329 OEJCMJKM_00004 9292 3 Skin 0.07 protein_coding synonymous_variant LOW 267T>C Phe89Phe
M0022330 OEJCMJKM_00004 9376 4 Skin 0.10 protein_coding synonymous_variant LOW 183T>C Asp61Asp
M0022331 OEJCMJKM_00004 9413 3 Skin 0.07 protein_coding missense_variant MODERATE 146C>T Ala49Val
M0022332 OEJCMJKM_00002 4743 3 Skin 0.07 protein_coding synonymous_variant LOW 1407A>G Glu469Glu
M0022333 OEJCMJKM_00002 5865 3 Skin 0.07 protein_coding synonymous_variant LOW 285C>A Ala95Ala
M0022334 OEJCMJKM_00003 6253 3 Skin 0.07 protein_coding missense_variant MODERATE 991A>G Asn331Asp
M0022335 OEJCMJKM_00003 6260 3 Skin 0.07 protein_coding synonymous_variant LOW 984G>A Pro328Pro
M0022336 OEJCMJKM_00003 6485 3 Skin 0.07 protein_coding synonymous_variant LOW 759T>C Gly253Gly
M0022337 OEJCMJKM_00004 7422 3 Skin 0.07 protein_coding missense_variant MODERATE 2137G>A Val713Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OEJCMJKM_00003 SMZ54585.1|GH8 95.9 5.21e-274 1 370 1 1
OEJCMJKM_00005 SMZ54583.1|GT2 97.6 0 1 867 1 1
OEJCMJKM_00016 SMZ54572.1|GH18 99.3 0 1 562 0.9982 0.9982
OEJCMJKM_00028 AYO40574.1|GH1 95.9 0 1 467 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
OEJCMJKM_00011 3.A.1.5.27 76.2 1.6e-140 1 322 0.9787 1.0949 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
OEJCMJKM_00012 3.A.1.5.27 75.3 2.3e-139 1 324 0.9939 1.0983 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily