Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2019
  Reference Plasmid   1111525849737037_bin.1__k141_64559
  Reference Plasmid Size   15218
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0022780 JEOKDLJC_00011 10336 9 Skin 0.41 protein_coding synonymous_variant LOW 336T>G Gly112Gly
M0022781 JEOKDLJC_00011 10366 10 Skin 0.45 protein_coding synonymous_variant LOW 306A>G Val102Val
M0022782 JEOKDLJC_00011 10486 6 Skin 0.27 protein_coding synonymous_variant LOW 186C>A Thr62Thr
M0022783 JEOKDLJC_00011 10588 6 Skin 0.27 protein_coding synonymous_variant LOW 84T>G Ala28Ala
M0022784 JEOKDLJC_00011 10657 9 Skin 0.41 protein_coding missense_variant MODERATE 15A>C Lys5Asn
M0022785 JEOKDLJC_00012 10746 4 Skin 0.18 protein_coding synonymous_variant LOW 2250G>A Glu750Glu
M0022786 JEOKDLJC_00012 10812 3 Skin 0.14 protein_coding synonymous_variant LOW 2184C>T His728His
M0022787 JEOKDLJC_00012 10836 4 Skin 0.18 protein_coding synonymous_variant LOW 2160C>G Pro720Pro
M0022788 JEOKDLJC_00012 10863 6 Skin 0.27 protein_coding synonymous_variant LOW 2133A>C Ala711Ala
M0022789 JEOKDLJC_00012 11007 6 Skin 0.27 protein_coding synonymous_variant LOW 1989G>C Val663Val
M0022790 JEOKDLJC_00012 11034 5 Skin 0.23 protein_coding synonymous_variant LOW 1962G>T Ala654Ala
M0022791 JEOKDLJC_00012 11040 5 Skin 0.23 protein_coding synonymous_variant LOW 1956C>T Tyr652Tyr
M0022792 JEOKDLJC_00012 11043 6 Skin 0.27 protein_coding synonymous_variant LOW 1953T>G Leu651Leu
M0022793 JEOKDLJC_00012 11052 5 Skin 0.23 protein_coding synonymous_variant LOW 1944C>G Pro648Pro
M0022794 JEOKDLJC_00012 11112 6 Skin 0.27 protein_coding synonymous_variant LOW 1884T>C His628His
M0022795 JEOKDLJC_00012 11172 4 Skin 0.18 protein_coding synonymous_variant LOW 1824G>A Lys608Lys
M0022796 JEOKDLJC_00012 11175 4 Skin 0.18 protein_coding synonymous_variant LOW 1821C>G Val607Val
M0022797 JEOKDLJC_00012 11184 7 Skin 0.32 protein_coding synonymous_variant LOW 1812T>G Leu604Leu
M0022798 JEOKDLJC_00012 11190 5 Skin 0.23 protein_coding synonymous_variant LOW 1806G>A Glu602Glu
M0022799 JEOKDLJC_00012 11193 7 Skin 0.32 protein_coding synonymous_variant LOW 1803T>C His601His
M0022800 JEOKDLJC_00012 11229 6 Skin 0.27 protein_coding synonymous_variant LOW 1767A>C Leu589Leu
M0022801 JEOKDLJC_00012 11532 4 Skin 0.18 protein_coding synonymous_variant LOW 1464T>C Phe488Phe
M0022802 JEOKDLJC_00012 11679 5 Skin 0.23 protein_coding synonymous_variant LOW 1317C>G Ala439Ala
M0022803 JEOKDLJC_00012 11698 4 Skin 0.18 protein_coding missense_variant MODERATE 1298T>C Val433Ala
M0022804 JEOKDLJC_00012 11703 4 Skin 0.18 protein_coding synonymous_variant LOW 1293C>G Pro431Pro
M0022805 JEOKDLJC_00012 11752 7 Skin 0.32 protein_coding missense_variant MODERATE 1244T>C Val415Ala
M0022806 JEOKDLJC_00012 11901 6 Skin 0.27 protein_coding synonymous_variant LOW 1095G>A Pro365Pro
M0022807 JEOKDLJC_00012 11907 3 Skin 0.14 protein_coding synonymous_variant LOW 1089C>T Phe363Phe
M0022808 JEOKDLJC_00012 11984 7 Skin 0.32 protein_coding missense_variant MODERATE 1012C>A Leu338Met
M0022809 JEOKDLJC_00012 12417 5 Skin 0.23 protein_coding synonymous_variant LOW 579A>G Ala193Ala
M0022810 JEOKDLJC_00012 12444 5 Skin 0.23 protein_coding synonymous_variant LOW 552C>T Gly184Gly
M0022811 JEOKDLJC_00012 12781 6 Skin 0.27 protein_coding missense_variant MODERATE 215A>G Glu72Gly
M0022812 JEOKDLJC_00012 12990 5 Skin 0.23 protein_coding synonymous_variant LOW 6C>G Leu2Leu
M0022813 JEOKDLJC_00013 13087 3 Skin 0.14 protein_coding missense_variant MODERATE 262C>T Pro88Ser
M0022814 JEOKDLJC_00013 13208 3 Skin 0.14 protein_coding synonymous_variant LOW 141C>T Gly47Gly
M0022815 JEOKDLJC_00013 13277 6 Skin 0.27 protein_coding synonymous_variant LOW 72T>C Ala24Ala
M0022816 JEOKDLJC_00013 13322 4 Skin 0.18 protein_coding synonymous_variant LOW 27A>G Leu9Leu
M0022817 JEOKDLJC_00010 13369 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4674G>T None
M0022818 JEOKDLJC_00010 13402 4 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4707T>C None
M0022819 JEOKDLJC_00010 13447 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4752G>A None
M0022820 JEOKDLJC_00010 13478 5 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -4783A>T None
M0022821 JEOKDLJC_00014 13551 5 Skin 0.23 protein_coding synonymous_variant LOW 21C>G Ala7Ala
M0022822 JEOKDLJC_00014 13578 5 Skin 0.23 protein_coding synonymous_variant LOW 48A>G Ala16Ala
M0022823 JEOKDLJC_00014 13829 4 Skin 0.18 protein_coding missense_variant MODERATE 299C>T Ser100Leu
M0022824 JEOKDLJC_00014 13958 4 Skin 0.18 protein_coding missense_variant MODERATE 428A>C Glu143Ala
M0022825 JEOKDLJC_00014 14013 4 Skin 0.18 protein_coding synonymous_variant LOW 483C>T Val161Val
M0022826 JEOKDLJC_00014 14517 3 Skin 0.14 protein_coding synonymous_variant LOW 987T>C Asn329Asn
M0022827 JEOKDLJC_00014 14535 3 Skin 0.14 protein_coding synonymous_variant LOW 1005A>G Ala335Ala
M0022828 JEOKDLJC_00004 3054 6 Skin 0.27 protein_coding synonymous_variant LOW 699C>G Leu233Leu
M0022829 JEOKDLJC_00004 3089 6 Skin 0.27 protein_coding missense_variant MODERATE 664A>G Thr222Ala
M0022830 JEOKDLJC_00004 3201 4 Skin 0.18 protein_coding synonymous_variant LOW 552T>C Ile184Ile
M0022831 JEOKDLJC_00004 3336 7 Skin 0.32 protein_coding synonymous_variant LOW 417A>G Pro139Pro
M0022832 JEOKDLJC_00004 3343 3 Skin 0.14 protein_coding missense_variant MODERATE 410T>C Val137Ala
M0022833 JEOKDLJC_00004 3372 7 Skin 0.32 protein_coding synonymous_variant LOW 381T>C Ile127Ile
M0022834 JEOKDLJC_00004 3461 6 Skin 0.27 protein_coding missense_variant MODERATE 292C>G Arg98Gly
M0022835 JEOKDLJC_00004 3599 6 Skin 0.27 protein_coding missense_variant MODERATE 154A>G Asn52Asp
M0022836 JEOKDLJC_00004 3627 5 Skin 0.23 protein_coding synonymous_variant LOW 126T>C Ile42Ile
M0022837 JEOKDLJC_00004 3649 5 Skin 0.23 protein_coding missense_variant MODERATE 104G>A Gly35Glu
M0022838 JEOKDLJC_00004 3687 6 Skin 0.27 protein_coding synonymous_variant LOW 66A>C Ala22Ala
M0022839 JEOKDLJC_00006 4300 4 Skin 0.18 protein_coding synonymous_variant LOW 771G>C Thr257Thr
M0022840 JEOKDLJC_00006 4996 7 Skin 0.32 protein_coding synonymous_variant LOW 75A>G Leu25Leu
M0022841 JEOKDLJC_00007 5310 5 Skin 0.23 protein_coding synonymous_variant LOW 339T>C Val113Val
M0022842 JEOKDLJC_00007 5540 8 Skin 0.36 protein_coding missense_variant MODERATE 109T>C Tyr37His
M0022843 JEOKDLJC_00007 5555 8 Skin 0.36 protein_coding missense_variant MODERATE 94A>G Lys32Glu
M0022844 JEOKDLJC_00007 5556 6 Skin 0.27 protein_coding synonymous_variant LOW 93C>G Thr31Thr
M0022845 JEOKDLJC_00007 5607 6 Skin 0.27 protein_coding synonymous_variant LOW 42G>C Leu14Leu
M0022846 JEOKDLJC_00007 5627 8 Skin 0.36 protein_coding missense_variant MODERATE 22A>C Met8Leu
M0022847 JEOKDLJC_00007 5644 3 Skin 0.14 protein_coding missense_variant MODERATE 5A>G Lys2Arg
M0022848 JEOKDLJC_00008 5665 8 Skin 0.36 protein_coding missense_variant MODERATE 799C>T Leu267Phe
M0022849 JEOKDLJC_00008 5895 3 Skin 0.14 protein_coding missense_variant MODERATE 569C>G Ala190Gly
M0022850 JEOKDLJC_00008 5897 3 Skin 0.14 protein_coding synonymous_variant LOW 567G>C Leu189Leu
M0022851 JEOKDLJC_00008 5903 4 Skin 0.18 protein_coding synonymous_variant LOW 561C>T Tyr187Tyr
M0022852 JEOKDLJC_00008 5912 5 Skin 0.23 protein_coding synonymous_variant LOW 552C>G Val184Val
M0022853 JEOKDLJC_00008 6037 3 Skin 0.14 protein_coding synonymous_variant LOW 427C>A Arg143Arg
M0022854 JEOKDLJC_00008 6107 4 Skin 0.18 protein_coding synonymous_variant LOW 357C>T Gly119Gly
M0022855 JEOKDLJC_00008 6110 8 Skin 0.36 protein_coding synonymous_variant LOW 354C>G Val118Val
M0022856 JEOKDLJC_00008 6116 8 Skin 0.36 protein_coding synonymous_variant LOW 348T>C Ile116Ile
M0022857 JEOKDLJC_00008 6140 7 Skin 0.32 protein_coding synonymous_variant LOW 324C>T His108His
M0022858 JEOKDLJC_00008 6143 3 Skin 0.14 protein_coding synonymous_variant LOW 321T>C Ala107Ala
M0022859 JEOKDLJC_00008 6257 6 Skin 0.27 protein_coding synonymous_variant LOW 207T>C Val69Val
M0022860 JEOKDLJC_00008 6269 4 Skin 0.18 protein_coding synonymous_variant LOW 195G>C Leu65Leu
M0022861 JEOKDLJC_00008 6272 8 Skin 0.36 protein_coding synonymous_variant LOW 192T>C Tyr64Tyr
M0022862 JEOKDLJC_00008 6281 8 Skin 0.36 protein_coding synonymous_variant LOW 183T>C Leu61Leu
M0022863 JEOKDLJC_00009 6544 6 Skin 0.27 protein_coding synonymous_variant LOW 831T>C Asp277Asp
M0022864 JEOKDLJC_00009 6583 6 Skin 0.27 protein_coding synonymous_variant LOW 792C>T Ala264Ala
M0022865 JEOKDLJC_00009 6589 6 Skin 0.27 protein_coding synonymous_variant LOW 786C>T Ile262Ile
M0022866 JEOKDLJC_00009 6634 6 Skin 0.27 protein_coding synonymous_variant LOW 741C>T Ser247Ser
M0022867 JEOKDLJC_00009 6958 3 Skin 0.14 protein_coding synonymous_variant LOW 417T>G Leu139Leu
M0022868 JEOKDLJC_00009 7051 10 Skin 0.45 protein_coding missense_variant MODERATE 324C>G His108Gln
M0022869 JEOKDLJC_00010 7904 3 Skin 0.14 protein_coding synonymous_variant LOW 792C>T Asn264Asn
M0022870 JEOKDLJC_00010 8177 3 Skin 0.14 protein_coding synonymous_variant LOW 519C>T Thr173Thr
M0022871 JEOKDLJC_00010 8609 8 Skin 0.36 protein_coding synonymous_variant LOW 87A>G Pro29Pro
M0022872 JEOKDLJC_00010 8618 8 Skin 0.36 protein_coding synonymous_variant LOW 78A>G Ala26Ala
M0022873 JEOKDLJC_00011 8794 6 Skin 0.27 protein_coding synonymous_variant LOW 1878A>G Ala626Ala
M0022874 JEOKDLJC_00011 8806 3 Skin 0.14 protein_coding synonymous_variant LOW 1866C>A Val622Val
M0022875 JEOKDLJC_00011 8833 11 Skin 0.50 protein_coding synonymous_variant LOW 1839A>G Glu613Glu
M0022876 JEOKDLJC_00012 12776 3 Skin 0.14 protein_coding missense_variant MODERATE 220C>A Gln74Lys
M0022877 JEOKDLJC_00012 12786 3 Skin 0.14 protein_coding missense_variant MODERATE 210G>C Met70Ile
M0022878 JEOKDLJC_00012 12811 3 Skin 0.14 protein_coding missense_variant MODERATE 185G>C Gly62Ala
M0022879 JEOKDLJC_00010 8506 6 Skin 0.27 protein_coding synonymous_variant LOW 190T>C Leu64Leu
M0022880 JEOKDLJC_00011 8859 10 Skin 0.45 protein_coding synonymous_variant LOW 1813C>T Leu605Leu
M0022881 JEOKDLJC_00011 9304 10 Skin 0.45 protein_coding synonymous_variant LOW 1368C>T Asp456Asp
M0022882 JEOKDLJC_00011 9847 11 Skin 0.50 protein_coding synonymous_variant LOW 825A>G Ser275Ser
M0022883 JEOKDLJC_00011 10318 9 Skin 0.41 protein_coding synonymous_variant LOW 354G>C Leu118Leu
M0022884 JEOKDLJC_00006 4643 3 Skin 0.14 protein_coding missense_variant MODERATE 428G>A Gly143Glu
M0022885 JEOKDLJC_00006 4778 3 Skin 0.14 protein_coding missense_variant MODERATE 293A>C Asn98Thr
M0022886 JEOKDLJC_00006 4797 3 Skin 0.14 protein_coding missense_variant MODERATE 274G>A Val92Met
M0022887 JEOKDLJC_00007 5371 4 Skin 0.18 protein_coding missense_variant MODERATE 278A>G Lys93Arg
M0022888 JEOKDLJC_00007 5547 3 Skin 0.14 protein_coding synonymous_variant LOW 102G>A Ala34Ala
M0022889 JEOKDLJC_00007 5589 3 Skin 0.14 protein_coding synonymous_variant LOW 60G>A Glu20Glu
M0022890 JEOKDLJC_00007 5618 5 Skin 0.23 protein_coding missense_variant MODERATE 31G>A Val11Ile
M0022891 JEOKDLJC_00008 5968 5 Skin 0.23 protein_coding missense_variant MODERATE 496G>T Ala166Ser
M0022892 JEOKDLJC_00008 5981 7 Skin 0.32 protein_coding synonymous_variant LOW 483C>G Leu161Leu
M0022893 JEOKDLJC_00008 5990 5 Skin 0.23 protein_coding synonymous_variant LOW 474G>C Ala158Ala
M0022894 JEOKDLJC_00008 6017 5 Skin 0.23 protein_coding synonymous_variant LOW 447G>C Val149Val
M0022895 JEOKDLJC_00008 6038 7 Skin 0.32 protein_coding synonymous_variant LOW 426C>G Val142Val
M0022896 JEOKDLJC_00008 6065 9 Skin 0.41 protein_coding synonymous_variant LOW 399C>G Leu133Leu
M0022897 JEOKDLJC_00008 6104 6 Skin 0.27 protein_coding synonymous_variant LOW 360T>C Tyr120Tyr
M0022898 JEOKDLJC_00009 6658 4 Skin 0.18 protein_coding synonymous_variant LOW 717A>G Ala239Ala
M0022899 JEOKDLJC_00009 7117 3 Skin 0.14 protein_coding synonymous_variant LOW 258C>T His86His
M0022900 JEOKDLJC_00009 7180 6 Skin 0.27 protein_coding synonymous_variant LOW 195G>C Ala65Ala
M0022901 JEOKDLJC_00009 7273 3 Skin 0.14 protein_coding synonymous_variant LOW 102G>A Leu34Leu
M0022902 JEOKDLJC_00009 7353 3 Skin 0.14 protein_coding missense_variant MODERATE 22A>G Arg8Gly
M0022903 JEOKDLJC_00010 7541 7 Skin 0.32 protein_coding synonymous_variant LOW 1155T>G Pro385Pro
M0022904 JEOKDLJC_00010 7568 3 Skin 0.14 protein_coding synonymous_variant LOW 1128C>A Pro376Pro
M0022905 JEOKDLJC_00010 7646 3 Skin 0.14 protein_coding synonymous_variant LOW 1050T>C Phe350Phe
M0022906 JEOKDLJC_00010 7652 3 Skin 0.14 protein_coding synonymous_variant LOW 1044C>G Pro348Pro
M0022907 JEOKDLJC_00010 7958 5 Skin 0.23 protein_coding synonymous_variant LOW 738T>C His246His
M0022908 JEOKDLJC_00010 8000 4 Skin 0.18 protein_coding synonymous_variant LOW 696C>T His232His
M0022909 JEOKDLJC_00010 8287 4 Skin 0.18 protein_coding missense_variant MODERATE 409T>C Tyr137His
M0022910 JEOKDLJC_00010 8315 3 Skin 0.14 protein_coding synonymous_variant LOW 381T>C Val127Val
M0022911 JEOKDLJC_00010 8348 4 Skin 0.18 protein_coding synonymous_variant LOW 348C>G Val116Val
M0022912 JEOKDLJC_00010 8373 4 Skin 0.18 protein_coding missense_variant MODERATE 323C>A Ala108Asp
M0022913 JEOKDLJC_00010 8378 4 Skin 0.18 protein_coding synonymous_variant LOW 318A>C Gly106Gly
M0022914 JEOKDLJC_00011 9781 4 Skin 0.18 protein_coding synonymous_variant LOW 891C>T Leu297Leu
M0022915 JEOKDLJC_00011 10516 3 Skin 0.14 protein_coding synonymous_variant LOW 156G>A Ala52Ala
M0022916 JEOKDLJC_00012 10968 3 Skin 0.14 protein_coding synonymous_variant LOW 2028G>A Ala676Ala
M0022917 JEOKDLJC_00012 10971 3 Skin 0.14 protein_coding synonymous_variant LOW 2025G>C Gly675Gly
M0022918 JEOKDLJC_00012 10974 3 Skin 0.14 protein_coding synonymous_variant LOW 2022G>C Leu674Leu
M0022919 JEOKDLJC_00012 11001 4 Skin 0.18 protein_coding synonymous_variant LOW 1995T>C Arg665Arg
M0022920 JEOKDLJC_00012 11232 4 Skin 0.18 protein_coding synonymous_variant LOW 1764G>C Arg588Arg
M0022921 JEOKDLJC_00012 11517 3 Skin 0.14 protein_coding synonymous_variant LOW 1479A>G Ala493Ala
M0022922 JEOKDLJC_00012 11595 5 Skin 0.23 protein_coding synonymous_variant LOW 1401C>G Ala467Ala
M0022923 JEOKDLJC_00012 11607 6 Skin 0.27 protein_coding synonymous_variant LOW 1389G>C Arg463Arg
M0022924 JEOKDLJC_00012 11610 5 Skin 0.23 protein_coding synonymous_variant LOW 1386G>A Lys462Lys
M0022925 JEOKDLJC_00012 11634 6 Skin 0.27 protein_coding synonymous_variant LOW 1362G>C Ala454Ala
M0022926 JEOKDLJC_00012 11823 3 Skin 0.14 protein_coding synonymous_variant LOW 1173C>G Leu391Leu
M0022927 JEOKDLJC_00001 204 4 Skin 0.18 protein_coding synonymous_variant LOW 144T>C Ser48Ser
M0022928 JEOKDLJC_00001 237 4 Skin 0.18 protein_coding synonymous_variant LOW 177G>T Leu59Leu
M0022929 JEOKDLJC_00001 378 3 Skin 0.14 protein_coding synonymous_variant LOW 318G>T Leu106Leu
M0022930 JEOKDLJC_00001 393 4 Skin 0.18 protein_coding synonymous_variant LOW 333G>C Arg111Arg
M0022931 JEOKDLJC_00001 399 4 Skin 0.18 protein_coding synonymous_variant LOW 339A>C Ala113Ala
M0022932 JEOKDLJC_00001 477 4 Skin 0.18 protein_coding synonymous_variant LOW 417C>G Gly139Gly
M0022933 JEOKDLJC_00001 505 4 Skin 0.18 protein_coding synonymous_variant LOW 445T>C Leu149Leu
M0022934 JEOKDLJC_00001 544 4 Skin 0.18 protein_coding missense_variant MODERATE 484G>A Asp162Asn
M0022935 JEOKDLJC_00001 600 4 Skin 0.18 protein_coding synonymous_variant LOW 540C>T Tyr180Tyr
M0022936 JEOKDLJC_00002 800 5 Skin 0.23 protein_coding synonymous_variant LOW 87T>C Cys29Cys
M0022937 JEOKDLJC_00002 932 3 Skin 0.14 protein_coding synonymous_variant LOW 219C>G Pro73Pro
M0022938 JEOKDLJC_00002 1028 4 Skin 0.18 protein_coding synonymous_variant LOW 315A>C Val105Val
M0022939 JEOKDLJC_00002 1234 3 Skin 0.14 protein_coding missense_variant MODERATE 521T>C Val174Ala
M0022940 JEOKDLJC_00002 1337 3 Skin 0.14 protein_coding synonymous_variant LOW 624T>G Val208Val
M0022941 JEOKDLJC_00002 1556 3 Skin 0.14 protein_coding synonymous_variant LOW 843G>C Thr281Thr
M0022942 JEOKDLJC_00002 1607 3 Skin 0.14 protein_coding synonymous_variant LOW 894T>C Ala298Ala
M0022943 JEOKDLJC_00002 2076 4 Skin 0.18 protein_coding synonymous_variant LOW 1363T>C Leu455Leu
M0022944 JEOKDLJC_00002 2246 4 Skin 0.18 protein_coding synonymous_variant LOW 1533T>C Ile511Ile
M0022945 JEOKDLJC_00002 2383 4 Skin 0.18 protein_coding stop_lost&splice_region_variant HIGH 1670A>G Ter557Trpext*?
M0022946 JEOKDLJC_00003 2813 5 Skin 0.23 protein_coding synonymous_variant LOW 402A>G Glu134Glu
M0022947 JEOKDLJC_00004 3447 4 Skin 0.18 protein_coding missense_variant MODERATE 306G>C Leu102Phe
M0022948 JEOKDLJC_00006 4140 3 Skin 0.14 protein_coding missense_variant MODERATE 931T>A Ser311Thr
M0022949 JEOKDLJC_00006 4147 3 Skin 0.14 protein_coding synonymous_variant LOW 924C>T Tyr308Tyr
M0022950 JEOKDLJC_00006 4258 5 Skin 0.23 protein_coding synonymous_variant LOW 813C>G Ser271Ser
M0022951 JEOKDLJC_00006 4452 5 Skin 0.23 protein_coding missense_variant MODERATE 619A>C Met207Leu
M0022952 JEOKDLJC_00011 9265 3 Skin 0.14 protein_coding synonymous_variant LOW 1407C>G Ser469Ser
M0022953 JEOKDLJC_00011 9535 3 Skin 0.14 protein_coding synonymous_variant LOW 1137G>C Pro379Pro
M0022954 JEOKDLJC_00008 5729 3 Skin 0.14 protein_coding synonymous_variant LOW 735C>G Ala245Ala
M0022955 JEOKDLJC_00008 5730 3 Skin 0.14 protein_coding missense_variant MODERATE 734C>G Ala245Gly
M0022956 JEOKDLJC_00008 5936 3 Skin 0.14 protein_coding synonymous_variant LOW 528G>C Ala176Ala
M0022957 JEOKDLJC_00008 6113 3 Skin 0.14 protein_coding synonymous_variant LOW 351G>C Ala117Ala
M0022958 JEOKDLJC_00002 980 3 Skin 0.14 protein_coding synonymous_variant LOW 267T>G Pro89Pro
M0022959 JEOKDLJC_00002 2198 3 Skin 0.14 protein_coding synonymous_variant LOW 1485C>T Arg495Arg
M0022960 JEOKDLJC_00003 2507 3 Skin 0.14 protein_coding synonymous_variant LOW 96G>C Ala32Ala
M0022961 JEOKDLJC_00003 2814 4 Skin 0.18 protein_coding synonymous_variant LOW 403T>C Leu135Leu
M0022962 JEOKDLJC_00004 3076 3 Skin 0.14 protein_coding missense_variant MODERATE 677G>A Arg226His
M0022963 JEOKDLJC_00012 11529 3 Skin 0.14 protein_coding synonymous_variant LOW 1467G>A Gln489Gln
M0022964 JEOKDLJC_00012 11600 4 Skin 0.18 protein_coding missense_variant MODERATE 1396G>A Glu466Lys
M0022965 JEOKDLJC_00013 13232 3 Skin 0.14 protein_coding synonymous_variant LOW 117G>T Leu39Leu
M0022966 JEOKDLJC_00004 4066 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -314A>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
JEOKDLJC_00011 3.D.4.2.2 72 3.4e-288 3 658 0.9970 0.9939 3 Primary Active Transporters 3.D Oxidoreduction-driven transporters 3.D.4 The Proton-translocating Cytochrome Oxidase (COX) Superfamily