Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2046
  Reference Plasmid   1111525849737286_bin.3__k141_231475
  Reference Plasmid Size   10560
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0023437 NBIPCMFG_00003 1422 3 Skin 0.60 protein_coding synonymous_variant LOW 975C>A Ala325Ala
M0023438 NBIPCMFG_00004 2843 3 Skin 0.60 protein_coding synonymous_variant LOW 45G>C Ala15Ala
M0023439 NBIPCMFG_00004 2972 3 Skin 0.60 protein_coding synonymous_variant LOW 174T>C Arg58Arg
M0023440 NBIPCMFG_00004 3254 4 Skin 0.80 protein_coding synonymous_variant LOW 456A>G Thr152Thr
M0023441 NBIPCMFG_00005 4579 3 Skin 0.60 protein_coding synonymous_variant LOW 1029T>C Pro343Pro
M0023442 NBIPCMFG_00005 4618 3 Skin 0.60 protein_coding synonymous_variant LOW 1068G>A Pro356Pro
M0023443 NBIPCMFG_00005 4764 4 Skin 0.80 protein_coding missense_variant MODERATE 1214C>G Ala405Gly
M0023444 NBIPCMFG_00005 4869 4 Skin 0.80 protein_coding missense_variant MODERATE 1319G>T Gly440Val
M0023445 NBIPCMFG_00006 5746 3 Skin 0.60 protein_coding synonymous_variant LOW 147C>G Thr49Thr
M0023446 NBIPCMFG_00006 6982 4 Skin 0.80 protein_coding synonymous_variant LOW 1383C>T Asp461Asp
M0023447 NBIPCMFG_00007 8206 3 Skin 0.60 protein_coding missense_variant MODERATE 668C>T Pro223Leu
M0023448 NBIPCMFG_00010 10321 3 Skin 0.60 protein_coding synonymous_variant LOW 504A>G Gln168Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
NBIPCMFG_00004 QTD45496.1|GH23 80.1 7.8e-134 1 251 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term