Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2055
  Reference Plasmid   1111525849737367_bin.21__k141_313367
  Reference Plasmid Size   8809
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0023538 KJGFFIOG_00001 426 3 Skin 0.30 protein_coding synonymous_variant LOW 403T>C Leu135Leu
M0023539 KJGFFIOG_00001 428 3 Skin 0.30 protein_coding synonymous_variant LOW 405A>G Leu135Leu
M0023540 KJGFFIOG_00001 503 3 Skin 0.30 protein_coding synonymous_variant LOW 480C>T Phe160Phe
M0023541 KJGFFIOG_00001 749 3 Skin 0.30 protein_coding synonymous_variant LOW 726T>C Ile242Ile
M0023542 KJGFFIOG_00001 755 3 Skin 0.30 protein_coding synonymous_variant LOW 732T>C Cys244Cys
M0023543 KJGFFIOG_00001 1298 3 Skin 0.30 protein_coding synonymous_variant LOW 1275A>G Val425Val
M0023544 KJGFFIOG_00001 1742 3 Skin 0.30 protein_coding synonymous_variant LOW 1719C>G Thr573Thr
M0023545 KJGFFIOG_00001 1808 4 Skin 0.40 protein_coding synonymous_variant LOW 1785A>T Pro595Pro
M0023546 KJGFFIOG_00001 1823 3 Skin 0.30 protein_coding synonymous_variant LOW 1800T>C Tyr600Tyr
M0023547 KJGFFIOG_00001 1826 4 Skin 0.40 protein_coding synonymous_variant LOW 1803A>G Gln601Gln
M0023548 KJGFFIOG_00001 1841 5 Skin 0.50 protein_coding synonymous_variant LOW 1818G>T Arg606Arg
M0023549 KJGFFIOG_00001 1859 3 Skin 0.30 protein_coding synonymous_variant LOW 1836C>T Ser612Ser
M0023550 KJGFFIOG_00003 1931 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -718A>G None
M0023551 KJGFFIOG_00003 1936 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -713G>A None
M0023552 KJGFFIOG_00002 2048 6 Skin 0.60 protein_coding synonymous_variant LOW 339C>T Thr113Thr
M0023553 KJGFFIOG_00002 2050 5 Skin 0.50 protein_coding missense_variant MODERATE 337A>G Thr113Ala
M0023554 KJGFFIOG_00002 2063 5 Skin 0.50 protein_coding synonymous_variant LOW 324G>A Ala108Ala
M0023555 KJGFFIOG_00002 2087 6 Skin 0.60 protein_coding synonymous_variant LOW 300A>C Ile100Ile
M0023556 KJGFFIOG_00002 2090 5 Skin 0.50 protein_coding synonymous_variant LOW 297G>C Ser99Ser
M0023557 KJGFFIOG_00002 2167 5 Skin 0.50 protein_coding missense_variant MODERATE 220A>C Met74Leu
M0023558 KJGFFIOG_00002 2170 7 Skin 0.70 protein_coding missense_variant MODERATE 217T>C Ser73Pro
M0023559 KJGFFIOG_00002 2225 7 Skin 0.70 protein_coding synonymous_variant LOW 162T>C Val54Val
M0023560 KJGFFIOG_00002 2270 7 Skin 0.70 protein_coding synonymous_variant LOW 117T>C Val39Val
M0023561 KJGFFIOG_00003 2805 7 Skin 0.70 protein_coding missense_variant MODERATE 157A>G Thr53Ala
M0023562 KJGFFIOG_00003 2807 3 Skin 0.30 protein_coding synonymous_variant LOW 159G>T Thr53Thr
M0023563 KJGFFIOG_00003 2815 7 Skin 0.70 protein_coding missense_variant MODERATE 167A>G Asn56Ser
M0023564 KJGFFIOG_00003 2894 3 Skin 0.30 protein_coding synonymous_variant LOW 246C>T Asp82Asp
M0023565 KJGFFIOG_00003 2930 7 Skin 0.70 protein_coding synonymous_variant LOW 282A>G Pro94Pro
M0023566 KJGFFIOG_00003 3008 7 Skin 0.70 protein_coding synonymous_variant LOW 360T>C Thr120Thr
M0023567 KJGFFIOG_00003 3020 7 Skin 0.70 protein_coding missense_variant MODERATE 372C>G Asp124Glu
M0023568 KJGFFIOG_00003 3029 7 Skin 0.70 protein_coding synonymous_variant LOW 381A>G Arg127Arg
M0023569 KJGFFIOG_00003 3083 5 Skin 0.50 protein_coding synonymous_variant LOW 435G>A Pro145Pro
M0023570 KJGFFIOG_00003 3098 6 Skin 0.60 protein_coding synonymous_variant LOW 450T>C Gly150Gly
M0023571 KJGFFIOG_00003 3131 7 Skin 0.70 protein_coding synonymous_variant LOW 483T>G Leu161Leu
M0023572 KJGFFIOG_00003 3133 7 Skin 0.70 protein_coding missense_variant MODERATE 485T>C Val162Ala
M0023573 KJGFFIOG_00003 3134 5 Skin 0.50 protein_coding synonymous_variant LOW 486T>C Val162Val
M0023574 KJGFFIOG_00003 3212 6 Skin 0.60 protein_coding synonymous_variant LOW 564A>G Thr188Thr
M0023575 KJGFFIOG_00003 3302 6 Skin 0.60 protein_coding synonymous_variant LOW 654T>C Ser218Ser
M0023576 KJGFFIOG_00003 3371 5 Skin 0.50 protein_coding synonymous_variant LOW 723C>T Asn241Asn
M0023577 KJGFFIOG_00003 3389 5 Skin 0.50 protein_coding synonymous_variant LOW 741G>A Val247Val
M0023578 KJGFFIOG_00003 3419 4 Skin 0.40 protein_coding synonymous_variant LOW 771T>C Leu257Leu
M0023579 KJGFFIOG_00003 3429 3 Skin 0.30 protein_coding missense_variant MODERATE 781G>C Val261Leu
M0023580 KJGFFIOG_00003 3461 4 Skin 0.40 protein_coding synonymous_variant LOW 813A>T Arg271Arg
M0023581 KJGFFIOG_00003 3513 3 Skin 0.30 protein_coding missense_variant MODERATE 865T>G Leu289Val
M0023582 KJGFFIOG_00003 3599 3 Skin 0.30 protein_coding synonymous_variant LOW 951T>G Thr317Thr
M0023583 KJGFFIOG_00002 3735 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1349T>C None
M0023584 KJGFFIOG_00002 3738 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1352T>C None
M0023585 KJGFFIOG_00002 3769 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1383G>A None
M0023586 KJGFFIOG_00002 3770 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1384T>C None
M0023587 KJGFFIOG_00002 3772 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1386G>T None
M0023588 KJGFFIOG_00002 3781 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1395C>A None
M0023589 KJGFFIOG_00002 3783 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1397G>T None
M0023590 KJGFFIOG_00004 3951 4 Skin 0.40 protein_coding missense_variant MODERATE 163G>C Val55Leu
M0023591 KJGFFIOG_00004 3974 5 Skin 0.50 protein_coding synonymous_variant LOW 186A>G Pro62Pro
M0023592 KJGFFIOG_00002 4032 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1646A>G None
M0023593 KJGFFIOG_00002 4047 6 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1661A>G None
M0023594 KJGFFIOG_00005 4263 7 Skin 0.70 protein_coding missense_variant MODERATE 508C>G Leu170Val
M0023595 KJGFFIOG_00005 4462 6 Skin 0.60 protein_coding missense_variant MODERATE 309T>A His103Gln
M0023596 KJGFFIOG_00005 4498 4 Skin 0.40 protein_coding synonymous_variant LOW 273G>A Ala91Ala
M0023597 KJGFFIOG_00005 4684 6 Skin 0.60 protein_coding synonymous_variant LOW 87T>A Pro29Pro
M0023598 KJGFFIOG_00005 4693 6 Skin 0.60 protein_coding synonymous_variant LOW 78C>G Ala26Ala
M0023599 KJGFFIOG_00005 4696 6 Skin 0.60 protein_coding synonymous_variant LOW 75C>T Ala25Ala
M0023600 KJGFFIOG_00002 4829 6 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2443T>C None
M0023601 KJGFFIOG_00002 4871 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -2485G>C None
M0023602 KJGFFIOG_00002 4908 6 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2522T>A None
M0023603 KJGFFIOG_00006 5107 3 Skin 0.30 protein_coding missense_variant MODERATE 807T>A His269Gln
M0023604 KJGFFIOG_00006 5272 3 Skin 0.30 protein_coding synonymous_variant LOW 642T>C Arg214Arg
M0023605 KJGFFIOG_00006 5308 3 Skin 0.30 protein_coding synonymous_variant LOW 606G>T Gly202Gly
M0023606 KJGFFIOG_00006 5567 3 Skin 0.30 protein_coding missense_variant MODERATE 347T>C Leu116Ser
M0023607 KJGFFIOG_00006 5632 3 Skin 0.30 protein_coding synonymous_variant LOW 282C>T Leu94Leu
M0023608 KJGFFIOG_00006 5644 3 Skin 0.30 protein_coding synonymous_variant LOW 270G>A Leu90Leu
M0023609 KJGFFIOG_00007 5975 3 Skin 0.30 protein_coding missense_variant MODERATE 32C>T Thr11Ile
M0023610 KJGFFIOG_00007 6183 3 Skin 0.30 protein_coding synonymous_variant LOW 240A>T Thr80Thr
M0023611 KJGFFIOG_00007 6279 3 Skin 0.30 protein_coding synonymous_variant LOW 336A>G Ala112Ala
M0023612 KJGFFIOG_00007 6396 3 Skin 0.30 protein_coding synonymous_variant LOW 453T>C Pro151Pro
M0023613 KJGFFIOG_00007 6568 3 Skin 0.30 protein_coding missense_variant MODERATE 625G>A Val209Ile
M0023614 KJGFFIOG_00007 6625 3 Skin 0.30 protein_coding missense_variant MODERATE 682T>A Ser228Thr
M0023615 KJGFFIOG_00002 6721 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4335A>G None
M0023616 KJGFFIOG_00008 6886 3 Skin 0.30 protein_coding synonymous_variant LOW 603T>G Ala201Ala
M0023617 KJGFFIOG_00003 2793 4 Skin 0.40 protein_coding missense_variant MODERATE 145G>T Ala49Ser
M0023618 KJGFFIOG_00003 3293 3 Skin 0.30 protein_coding synonymous_variant LOW 645C>T Ile215Ile
M0023619 KJGFFIOG_00003 3338 4 Skin 0.40 protein_coding synonymous_variant LOW 690G>A Gly230Gly
M0023620 KJGFFIOG_00003 3407 3 Skin 0.30 protein_coding synonymous_variant LOW 759T>C Leu253Leu
M0023621 KJGFFIOG_00005 4141 6 Skin 0.60 protein_coding synonymous_variant LOW 630T>C Pro210Pro
M0023622 KJGFFIOG_00005 4168 5 Skin 0.50 protein_coding synonymous_variant LOW 603C>T Ser201Ser
M0023623 KJGFFIOG_00005 4204 5 Skin 0.50 protein_coding synonymous_variant LOW 567A>T Thr189Thr
M0023624 KJGFFIOG_00005 4357 6 Skin 0.60 protein_coding synonymous_variant LOW 414A>C Val138Val
M0023625 KJGFFIOG_00005 4387 6 Skin 0.60 protein_coding synonymous_variant LOW 384A>C Ser128Ser
M0023626 KJGFFIOG_00005 4518 3 Skin 0.30 protein_coding missense_variant MODERATE 253G>A Val85Ile
M0023627 KJGFFIOG_00005 4552 5 Skin 0.50 protein_coding synonymous_variant LOW 219G>T Gly73Gly
M0023628 KJGFFIOG_00002 4790 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2404C>T None
M0023629 KJGFFIOG_00002 4822 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -2436T>C None
M0023630 KJGFFIOG_00001 1262 3 Skin 0.30 protein_coding synonymous_variant LOW 1239T>A Ala413Ala
M0023631 KJGFFIOG_00002 2535 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -149C>G None
M0023632 KJGFFIOG_00002 2536 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -150T>C None
M0023633 KJGFFIOG_00003 2993 3 Skin 0.30 protein_coding synonymous_variant LOW 345T>C Asn115Asn
M0023634 KJGFFIOG_00002 4074 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -1688A>G None
M0023635 KJGFFIOG_00005 4081 3 Skin 0.30 protein_coding splice_region_variant&stop_retained_variant LOW 690A>G Ter230Ter






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
KJGFFIOG_00008 PHI:10701 hisF (A1S_3245) 95.6 8.6e-139 1 252 1.0000 1.0000 rodents pneumonia imidazole glycerol phosphate synthase cyclase subunit reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term