Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2068
  Reference Plasmid   1111525849737484_bin.25__k141_550767
  Reference Plasmid Size   6445
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0023905 OILDABNL_00002 2109 6 Skin 0.29 protein_coding synonymous_variant LOW 1098C>G Gly366Gly
M0023906 OILDABNL_00002 2115 6 Skin 0.29 protein_coding synonymous_variant LOW 1092T>C Gly364Gly
M0023907 OILDABNL_00002 3195 15 Skin 0.71 protein_coding synonymous_variant LOW 12A>G Gln4Gln
M0023908 OILDABNL_00002 3407 8 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -201G>A None
M0023909 OILDABNL_00003 3512 13 Skin 0.62 protein_coding synonymous_variant LOW 12C>T Thr4Thr
M0023910 OILDABNL_00004 3977 7 Skin 0.33 protein_coding synonymous_variant LOW 444C>T Pro148Pro
M0023911 OILDABNL_00004 4004 7 Skin 0.33 protein_coding synonymous_variant LOW 417C>A Ala139Ala
M0023912 OILDABNL_00004 4121 11 Skin 0.52 protein_coding synonymous_variant LOW 300A>G Glu100Glu
M0023913 OILDABNL_00004 4322 14 Skin 0.67 protein_coding synonymous_variant LOW 99A>G Leu33Leu
M0023914 OILDABNL_00002 4509 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1303G>A None
M0023915 OILDABNL_00002 4541 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1335C>T None
M0023916 OILDABNL_00002 4580 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1374T>C None
M0023917 OILDABNL_00005 4604 5 Skin 0.24 protein_coding missense_variant MODERATE 1526G>A Ser509Asn
M0023918 OILDABNL_00005 4657 7 Skin 0.33 protein_coding synonymous_variant LOW 1473A>T Ala491Ala
M0023919 OILDABNL_00005 4735 5 Skin 0.24 protein_coding synonymous_variant LOW 1395C>T Gly465Gly
M0023920 OILDABNL_00002 2222 10 Skin 0.48 protein_coding missense_variant MODERATE 985G>C Val329Leu
M0023921 OILDABNL_00002 2683 5 Skin 0.24 protein_coding missense_variant MODERATE 524C>A Pro175Gln
M0023922 OILDABNL_00002 2708 6 Skin 0.29 protein_coding synonymous_variant LOW 499T>C Leu167Leu
M0023923 OILDABNL_00002 2712 6 Skin 0.29 protein_coding synonymous_variant LOW 495A>G Gln165Gln
M0023924 OILDABNL_00002 2970 12 Skin 0.57 protein_coding synonymous_variant LOW 237T>A Ile79Ile
M0023925 OILDABNL_00002 2973 12 Skin 0.57 protein_coding synonymous_variant LOW 234T>C Gly78Gly
M0023926 OILDABNL_00002 2985 12 Skin 0.57 protein_coding synonymous_variant LOW 222T>C Leu74Leu
M0023927 OILDABNL_00002 3012 12 Skin 0.57 protein_coding synonymous_variant LOW 195G>T Ala65Ala
M0023928 OILDABNL_00005 5038 5 Skin 0.24 protein_coding synonymous_variant LOW 1092T>C Gly364Gly
M0023929 OILDABNL_00001 776 10 Skin 0.48 protein_coding missense_variant MODERATE 719G>A Gly240Glu
M0023930 OILDABNL_00001 828 4 Skin 0.19 protein_coding synonymous_variant LOW 771G>C Thr257Thr
M0023931 OILDABNL_00001 834 4 Skin 0.19 protein_coding synonymous_variant LOW 777T>C Ile259Ile
M0023932 OILDABNL_00001 837 4 Skin 0.19 protein_coding synonymous_variant LOW 780A>G Glu260Glu
M0023933 OILDABNL_00001 897 4 Skin 0.19 protein_coding synonymous_variant LOW 840C>G Ala280Ala
M0023934 OILDABNL_00001 1209 6 Skin 0.29 protein_coding synonymous_variant LOW 1152C>T Ser384Ser
M0023935 OILDABNL_00001 1233 6 Skin 0.29 protein_coding synonymous_variant LOW 1176A>G Ser392Ser
M0023936 OILDABNL_00001 1236 6 Skin 0.29 protein_coding synonymous_variant LOW 1179C>G Arg393Arg
M0023937 OILDABNL_00002 1503 8 Skin 0.38 protein_coding synonymous_variant LOW 1704A>G Thr568Thr
M0023938 OILDABNL_00002 2813 6 Skin 0.29 protein_coding synonymous_variant LOW 394C>T Leu132Leu
M0023939 OILDABNL_00002 3049 11 Skin 0.52 protein_coding missense_variant MODERATE 158T>C Leu53Ser
M0023940 OILDABNL_00002 3078 10 Skin 0.48 protein_coding synonymous_variant LOW 129C>T Ser43Ser
M0023941 OILDABNL_00002 3358 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -152C>T None
M0023942 OILDABNL_00002 3366 6 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -160T>A None
M0023943 OILDABNL_00002 3448 7 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -242T>C None
M0023944 OILDABNL_00002 2883 8 Skin 0.38 protein_coding synonymous_variant LOW 324C>G Leu108Leu
M0023945 OILDABNL_00001 1065 9 Skin 0.43 protein_coding synonymous_variant LOW 1008G>C Ala336Ala
M0023946 OILDABNL_00002 2868 7 Skin 0.33 protein_coding synonymous_variant LOW 339G>A Glu113Glu
M0023947 OILDABNL_00001 153 4 Skin 0.19 protein_coding synonymous_variant LOW 96T>C Val32Val
M0023948 OILDABNL_00001 189 4 Skin 0.19 protein_coding synonymous_variant LOW 132G>A Arg44Arg
M0023949 OILDABNL_00001 207 4 Skin 0.19 protein_coding synonymous_variant LOW 150T>C Asp50Asp
M0023950 OILDABNL_00001 216 4 Skin 0.19 protein_coding synonymous_variant LOW 159G>A Pro53Pro
M0023951 OILDABNL_00001 318 4 Skin 0.19 protein_coding synonymous_variant LOW 261T>C Gly87Gly
M0023952 OILDABNL_00001 441 3 Skin 0.14 protein_coding synonymous_variant LOW 384T>C Asn128Asn
M0023953 OILDABNL_00001 474 3 Skin 0.14 protein_coding synonymous_variant LOW 417T>C Phe139Phe
M0023954 OILDABNL_00001 495 3 Skin 0.14 protein_coding missense_variant MODERATE 438G>C Glu146Asp
M0023955 OILDABNL_00001 99 3 Skin 0.14 protein_coding synonymous_variant LOW 42A>G Glu14Glu
M0023956 OILDABNL_00002 3288 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -82T>C None
M0023957 OILDABNL_00002 3291 4 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -85C>A None
M0023958 OILDABNL_00002 3751 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -545G>C None
M0023959 OILDABNL_00002 3769 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -563G>C None
M0023960 OILDABNL_00002 3774 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -568T>C None
M0023961 OILDABNL_00002 3786 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -580G>A None
M0023962 OILDABNL_00002 3787 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -581C>T None
M0023963 OILDABNL_00002 3792 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -586C>G None
M0023964 OILDABNL_00002 3808 3 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -602T>G None
M0023965 OILDABNL_00004 4223 5 Skin 0.24 protein_coding synonymous_variant LOW 198C>T Asn66Asn
M0023966 OILDABNL_00004 4079 4 Skin 0.19 protein_coding synonymous_variant LOW 342C>T Arg114Arg






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term