Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2094
  Reference Plasmid   1111525849742771_bin.4__k141_123370
  Reference Plasmid Size   63257
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0024527 LDHMOCON_00035 40986 3 Skin 0.17 protein_coding synonymous_variant LOW 232C>T Leu78Leu
M0024528 LDHMOCON_00035 41209 4 Skin 0.22 protein_coding synonymous_variant LOW 9C>T Ser3Ser
M0024529 LDHMOCON_00030 41237 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4850C>T None
M0024530 LDHMOCON_00030 41255 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4868C>T None
M0024531 LDHMOCON_00030 41285 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4898A>G None
M0024532 LDHMOCON_00030 41293 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4906C>T None
M0024533 LDHMOCON_00030 41326 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4939T>C None
M0024534 LDHMOCON_00036 41447 4 Skin 0.22 protein_coding synonymous_variant LOW 105C>A Leu35Leu
M0024535 LDHMOCON_00036 41468 4 Skin 0.22 protein_coding synonymous_variant LOW 126T>C Leu42Leu
M0024536 LDHMOCON_00036 41579 3 Skin 0.17 protein_coding synonymous_variant LOW 237C>T Arg79Arg
M0024537 LDHMOCON_00036 41612 3 Skin 0.17 protein_coding synonymous_variant LOW 270A>G Glu90Glu
M0024538 LDHMOCON_00036 41700 5 Skin 0.28 protein_coding missense_variant MODERATE 358A>G Thr120Ala
M0024539 LDHMOCON_00036 41747 3 Skin 0.17 protein_coding synonymous_variant LOW 405C>T Ile135Ile
M0024540 LDHMOCON_00036 41981 5 Skin 0.28 protein_coding synonymous_variant LOW 639T>C Thr213Thr
M0024541 LDHMOCON_00036 42002 5 Skin 0.28 protein_coding synonymous_variant LOW 660C>T Pro220Pro
M0024542 LDHMOCON_00036 42005 5 Skin 0.28 protein_coding synonymous_variant LOW 663C>T Asp221Asp
M0024543 LDHMOCON_00036 42059 4 Skin 0.22 protein_coding synonymous_variant LOW 717G>A Thr239Thr
M0024544 LDHMOCON_00036 42179 3 Skin 0.17 protein_coding synonymous_variant LOW 837A>C Arg279Arg
M0024545 LDHMOCON_00037 42347 4 Skin 0.22 protein_coding synonymous_variant LOW 123T>C Ala41Ala
M0024546 LDHMOCON_00037 42387 3 Skin 0.17 protein_coding missense_variant MODERATE 163G>A Val55Ile
M0024547 LDHMOCON_00037 42447 7 Skin 0.39 protein_coding missense_variant MODERATE 223A>G Ser75Gly
M0024548 LDHMOCON_00037 42467 4 Skin 0.22 protein_coding synonymous_variant LOW 243C>T Ile81Ile
M0024549 LDHMOCON_00037 42473 4 Skin 0.22 protein_coding synonymous_variant LOW 249C>T Ile83Ile
M0024550 LDHMOCON_00037 42489 4 Skin 0.22 protein_coding missense_variant MODERATE 265C>A Leu89Ile
M0024551 LDHMOCON_00037 42572 4 Skin 0.22 protein_coding synonymous_variant LOW 348C>T Phe116Phe
M0024552 LDHMOCON_00037 42605 5 Skin 0.28 protein_coding synonymous_variant LOW 381C>A Ala127Ala
M0024553 LDHMOCON_00037 42623 5 Skin 0.28 protein_coding synonymous_variant LOW 399G>C Gly133Gly
M0024554 LDHMOCON_00037 42750 5 Skin 0.28 protein_coding missense_variant MODERATE 526G>A Val176Ile
M0024555 LDHMOCON_00037 42805 5 Skin 0.28 protein_coding missense_variant MODERATE 581A>G His194Arg
M0024556 LDHMOCON_00037 42824 5 Skin 0.28 protein_coding synonymous_variant LOW 600C>A Gly200Gly
M0024557 LDHMOCON_00038 43121 5 Skin 0.28 protein_coding synonymous_variant LOW 1998T>C His666His
M0024558 LDHMOCON_00038 43144 5 Skin 0.28 protein_coding missense_variant MODERATE 1975G>A Ala659Thr
M0024559 LDHMOCON_00038 43145 5 Skin 0.28 protein_coding synonymous_variant LOW 1974T>C Ala658Ala
M0024560 LDHMOCON_00038 43166 5 Skin 0.28 protein_coding synonymous_variant LOW 1953T>C Val651Val
M0024561 LDHMOCON_00038 43186 7 Skin 0.39 protein_coding missense_variant MODERATE 1933G>A Val645Met
M0024562 LDHMOCON_00038 43256 5 Skin 0.28 protein_coding synonymous_variant LOW 1863T>C His621His
M0024563 LDHMOCON_00038 43274 5 Skin 0.28 protein_coding synonymous_variant LOW 1845T>C Ser615Ser
M0024564 LDHMOCON_00038 43301 5 Skin 0.28 protein_coding synonymous_variant LOW 1818C>G Gly606Gly
M0024565 LDHMOCON_00038 43321 5 Skin 0.28 protein_coding synonymous_variant LOW 1798T>C Leu600Leu
M0024566 LDHMOCON_00038 43332 5 Skin 0.28 protein_coding missense_variant MODERATE 1787C>A Ala596Glu
M0024567 LDHMOCON_00038 43349 5 Skin 0.28 protein_coding synonymous_variant LOW 1770C>T Thr590Thr
M0024568 LDHMOCON_00038 43376 5 Skin 0.28 protein_coding synonymous_variant LOW 1743C>G Pro581Pro
M0024569 LDHMOCON_00038 43388 5 Skin 0.28 protein_coding synonymous_variant LOW 1731A>T Arg577Arg
M0024570 LDHMOCON_00038 43397 5 Skin 0.28 protein_coding synonymous_variant LOW 1722C>T Tyr574Tyr
M0024571 LDHMOCON_00038 43457 5 Skin 0.28 protein_coding synonymous_variant LOW 1662T>G Leu554Leu
M0024572 LDHMOCON_00038 43463 5 Skin 0.28 protein_coding synonymous_variant LOW 1656G>A Ala552Ala
M0024573 LDHMOCON_00038 43481 5 Skin 0.28 protein_coding synonymous_variant LOW 1638T>G Ser546Ser
M0024574 LDHMOCON_00038 43493 5 Skin 0.28 protein_coding synonymous_variant LOW 1626C>T Phe542Phe
M0024575 LDHMOCON_00038 43496 5 Skin 0.28 protein_coding synonymous_variant LOW 1623C>T Ala541Ala
M0024576 LDHMOCON_00038 43511 5 Skin 0.28 protein_coding synonymous_variant LOW 1608T>C Val536Val
M0024577 LDHMOCON_00038 43522 5 Skin 0.28 protein_coding missense_variant MODERATE 1597C>T Arg533Cys
M0024578 LDHMOCON_00038 43550 5 Skin 0.28 protein_coding synonymous_variant LOW 1569C>T Ser523Ser
M0024579 LDHMOCON_00038 43575 5 Skin 0.28 protein_coding missense_variant MODERATE 1544G>A Gly515Asp
M0024580 LDHMOCON_00038 43583 5 Skin 0.28 protein_coding synonymous_variant LOW 1536T>C Gly512Gly
M0024581 LDHMOCON_00038 43616 5 Skin 0.28 protein_coding synonymous_variant LOW 1503T>C Ala501Ala
M0024582 LDHMOCON_00038 43624 5 Skin 0.28 protein_coding missense_variant MODERATE 1495C>T Leu499Phe
M0024583 LDHMOCON_00038 43634 5 Skin 0.28 protein_coding synonymous_variant LOW 1485A>G Thr495Thr
M0024584 LDHMOCON_00038 43637 5 Skin 0.28 protein_coding missense_variant MODERATE 1482G>C Arg494Ser
M0024585 LDHMOCON_00038 43642 5 Skin 0.28 protein_coding missense_variant MODERATE 1477A>G Ile493Val
M0024586 LDHMOCON_00038 43659 5 Skin 0.28 protein_coding missense_variant MODERATE 1460G>A Gly487Glu
M0024587 LDHMOCON_00038 43682 5 Skin 0.28 protein_coding synonymous_variant LOW 1437T>G Arg479Arg
M0024588 LDHMOCON_00038 43685 5 Skin 0.28 protein_coding synonymous_variant LOW 1434C>T Tyr478Tyr
M0024589 LDHMOCON_00038 43703 5 Skin 0.28 protein_coding synonymous_variant LOW 1416C>T Tyr472Tyr
M0024590 LDHMOCON_00038 43757 5 Skin 0.28 protein_coding synonymous_variant LOW 1362C>T Tyr454Tyr
M0024591 LDHMOCON_00038 43772 5 Skin 0.28 protein_coding synonymous_variant LOW 1347C>T Tyr449Tyr
M0024592 LDHMOCON_00038 43780 5 Skin 0.28 protein_coding synonymous_variant LOW 1339A>C Arg447Arg
M0024593 LDHMOCON_00038 43835 5 Skin 0.28 protein_coding synonymous_variant LOW 1284T>C Thr428Thr
M0024594 LDHMOCON_00038 43931 5 Skin 0.28 protein_coding synonymous_variant LOW 1188T>C His396His
M0024595 LDHMOCON_00038 43949 5 Skin 0.28 protein_coding synonymous_variant LOW 1170A>G Arg390Arg
M0024596 LDHMOCON_00038 43977 5 Skin 0.28 protein_coding missense_variant MODERATE 1142G>A Ser381Asn
M0024597 LDHMOCON_00038 43994 5 Skin 0.28 protein_coding synonymous_variant LOW 1125C>T Gly375Gly
M0024598 LDHMOCON_00038 44000 5 Skin 0.28 protein_coding synonymous_variant LOW 1119C>T Val373Val
M0024599 LDHMOCON_00038 44051 5 Skin 0.28 protein_coding synonymous_variant LOW 1068C>T Gly356Gly
M0024600 LDHMOCON_00038 44114 5 Skin 0.28 protein_coding synonymous_variant LOW 1005T>C Ala335Ala
M0024601 LDHMOCON_00038 44141 5 Skin 0.28 protein_coding synonymous_variant LOW 978T>C Asn326Asn
M0024602 LDHMOCON_00038 44153 5 Skin 0.28 protein_coding synonymous_variant LOW 966T>C Asp322Asp
M0024603 LDHMOCON_00038 44171 5 Skin 0.28 protein_coding synonymous_variant LOW 948G>A Thr316Thr
M0024604 LDHMOCON_00038 44182 5 Skin 0.28 protein_coding missense_variant MODERATE 937G>A Val313Ile
M0024605 LDHMOCON_00038 44188 5 Skin 0.28 protein_coding missense_variant MODERATE 931A>G Lys311Glu
M0024606 LDHMOCON_00038 44213 5 Skin 0.28 protein_coding synonymous_variant LOW 906C>T His302His
M0024607 LDHMOCON_00038 44318 5 Skin 0.28 protein_coding synonymous_variant LOW 801T>C Phe267Phe
M0024608 LDHMOCON_00038 44357 5 Skin 0.28 protein_coding synonymous_variant LOW 762A>G Arg254Arg
M0024609 LDHMOCON_00038 44390 5 Skin 0.28 protein_coding synonymous_variant LOW 729C>T Gly243Gly
M0024610 LDHMOCON_00038 44399 5 Skin 0.28 protein_coding synonymous_variant LOW 720C>G Arg240Arg
M0024611 LDHMOCON_00038 44410 5 Skin 0.28 protein_coding missense_variant MODERATE 709G>C Gly237Arg
M0024612 LDHMOCON_00038 44423 5 Skin 0.28 protein_coding synonymous_variant LOW 696A>T Gly232Gly
M0024613 LDHMOCON_00038 44438 5 Skin 0.28 protein_coding synonymous_variant LOW 681A>G Glu227Glu
M0024614 LDHMOCON_00038 44449 5 Skin 0.28 protein_coding missense_variant MODERATE 670A>G Ile224Val
M0024615 LDHMOCON_00038 44450 5 Skin 0.28 protein_coding synonymous_variant LOW 669T>C Leu223Leu
M0024616 LDHMOCON_00038 44505 5 Skin 0.28 protein_coding missense_variant MODERATE 614C>T Ala205Val
M0024617 LDHMOCON_00038 44579 5 Skin 0.28 protein_coding synonymous_variant LOW 540C>T Phe180Phe
M0024618 LDHMOCON_00038 44627 5 Skin 0.28 protein_coding synonymous_variant LOW 492C>T Thr164Thr
M0024619 LDHMOCON_00038 44656 5 Skin 0.28 protein_coding missense_variant MODERATE 463A>T Thr155Ser
M0024620 LDHMOCON_00038 44666 5 Skin 0.28 protein_coding synonymous_variant LOW 453T>A Ser151Ser
M0024621 LDHMOCON_00038 44687 5 Skin 0.28 protein_coding synonymous_variant LOW 432T>C Asp144Asp
M0024622 LDHMOCON_00038 44728 5 Skin 0.28 protein_coding missense_variant MODERATE 391G>A Ala131Thr
M0024623 LDHMOCON_00038 44730 5 Skin 0.28 protein_coding missense_variant MODERATE 389G>A Arg130Lys
M0024624 LDHMOCON_00038 44757 5 Skin 0.28 protein_coding missense_variant MODERATE 362G>A Cys121Tyr
M0024625 LDHMOCON_00038 44780 5 Skin 0.28 protein_coding synonymous_variant LOW 339C>A Gly113Gly
M0024626 LDHMOCON_00038 44801 5 Skin 0.28 protein_coding synonymous_variant LOW 318C>T Ala106Ala
M0024627 LDHMOCON_00038 44806 5 Skin 0.28 protein_coding missense_variant MODERATE 313A>T Thr105Ser
M0024628 LDHMOCON_00038 44842 5 Skin 0.28 protein_coding missense_variant MODERATE 277C>T Arg93Cys
M0024629 LDHMOCON_00038 44855 5 Skin 0.28 protein_coding synonymous_variant LOW 264A>G Gln88Gln
M0024630 LDHMOCON_00038 44860 5 Skin 0.28 protein_coding missense_variant MODERATE 259G>A Asp87Asn
M0024631 LDHMOCON_00038 44867 5 Skin 0.28 protein_coding synonymous_variant LOW 252T>C Gly84Gly
M0024632 LDHMOCON_00038 44930 4 Skin 0.22 protein_coding synonymous_variant LOW 189C>T Ser63Ser
M0024633 LDHMOCON_00038 44931 4 Skin 0.22 protein_coding missense_variant MODERATE 188G>A Ser63Asn
M0024634 LDHMOCON_00038 44937 4 Skin 0.22 protein_coding missense_variant MODERATE 182T>G Ile61Ser
M0024635 LDHMOCON_00038 44944 4 Skin 0.22 protein_coding missense_variant MODERATE 175G>A Val59Ile
M0024636 LDHMOCON_00038 44948 4 Skin 0.22 protein_coding synonymous_variant LOW 171G>T Ser57Ser
M0024637 LDHMOCON_00038 45002 4 Skin 0.22 protein_coding synonymous_variant LOW 117G>C Val39Val
M0024638 LDHMOCON_00038 45014 4 Skin 0.22 protein_coding synonymous_variant LOW 105C>T Ser35Ser
M0024639 LDHMOCON_00038 45022 4 Skin 0.22 protein_coding missense_variant MODERATE 97A>G Thr33Ala
M0024640 LDHMOCON_00038 45029 4 Skin 0.22 protein_coding synonymous_variant LOW 90T>C Gly30Gly
M0024641 LDHMOCON_00038 45034 4 Skin 0.22 protein_coding missense_variant MODERATE 85G>A Val29Ile
M0024642 LDHMOCON_00038 45054 4 Skin 0.22 protein_coding missense_variant MODERATE 65G>A Arg22Gln
M0024643 LDHMOCON_00038 45074 4 Skin 0.22 protein_coding synonymous_variant LOW 45A>G Arg15Arg
M0024644 LDHMOCON_00038 45075 4 Skin 0.22 protein_coding missense_variant MODERATE 44G>A Arg15Gln
M0024645 LDHMOCON_00038 45086 4 Skin 0.22 protein_coding synonymous_variant LOW 33C>T Asp11Asp
M0024646 LDHMOCON_00038 45094 4 Skin 0.22 protein_coding synonymous_variant LOW 25C>T Leu9Leu
M0024647 LDHMOCON_00038 45095 4 Skin 0.22 protein_coding synonymous_variant LOW 24G>T Pro8Pro
M0024648 LDHMOCON_00038 45101 4 Skin 0.22 protein_coding synonymous_variant LOW 18T>C Thr6Thr
M0024649 LDHMOCON_00034 45119 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4836A>G None
M0024650 LDHMOCON_00034 45122 4 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4839T>A None
M0024651 LDHMOCON_00039 45176 4 Skin 0.22 protein_coding synonymous_variant LOW 324T>C Ala108Ala
M0024652 LDHMOCON_00039 45232 4 Skin 0.22 protein_coding missense_variant MODERATE 268T>C Cys90Arg
M0024653 LDHMOCON_00039 45245 4 Skin 0.22 protein_coding synonymous_variant LOW 255T>C Asp85Asp
M0024654 LDHMOCON_00039 45252 4 Skin 0.22 protein_coding missense_variant MODERATE 248T>C Val83Ala
M0024655 LDHMOCON_00039 45257 4 Skin 0.22 protein_coding synonymous_variant LOW 243T>C Ala81Ala
M0024656 LDHMOCON_00039 45299 4 Skin 0.22 protein_coding synonymous_variant LOW 201T>C Gly67Gly
M0024657 LDHMOCON_00039 45308 4 Skin 0.22 protein_coding synonymous_variant LOW 192C>T Gly64Gly
M0024658 LDHMOCON_00039 45338 4 Skin 0.22 protein_coding synonymous_variant LOW 162C>G Gly54Gly
M0024659 LDHMOCON_00039 45395 4 Skin 0.22 protein_coding synonymous_variant LOW 105A>G Val35Val
M0024660 LDHMOCON_00039 45404 4 Skin 0.22 protein_coding synonymous_variant LOW 96G>C Leu32Leu
M0024661 LDHMOCON_00039 45447 4 Skin 0.22 protein_coding missense_variant MODERATE 53T>C Met18Thr
M0024662 LDHMOCON_00039 45458 4 Skin 0.22 protein_coding missense_variant MODERATE 42G>T Glu14Asp
M0024663 LDHMOCON_00039 45467 4 Skin 0.22 protein_coding synonymous_variant LOW 33C>T Asn11Asn
M0024664 LDHMOCON_00039 45471 4 Skin 0.22 protein_coding missense_variant MODERATE 29G>A Gly10Asp
M0024665 LDHMOCON_00028 33508 6 Skin 0.33 protein_coding synonymous_variant LOW 1105C>T Leu369Leu
M0024666 LDHMOCON_00028 34314 4 Skin 0.22 protein_coding missense_variant MODERATE 299A>G Asp100Gly
M0024667 LDHMOCON_00028 34315 5 Skin 0.28 protein_coding missense_variant MODERATE 298G>A Asp100Asn
M0024668 LDHMOCON_00028 34316 5 Skin 0.28 protein_coding synonymous_variant LOW 297C>T Leu99Leu
M0024669 LDHMOCON_00026 34616 3 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -2599T>C None
M0024670 LDHMOCON_00004 3821 3 Skin 0.17 protein_coding missense_variant MODERATE 309C>G Asn103Lys
M0024671 LDHMOCON_00004 3836 3 Skin 0.17 protein_coding synonymous_variant LOW 324A>G Lys108Lys
M0024672 LDHMOCON_00004 3843 3 Skin 0.17 protein_coding missense_variant MODERATE 331A>C Thr111Pro
M0024673 LDHMOCON_00004 3848 3 Skin 0.17 protein_coding missense_variant MODERATE 336C>A Asp112Glu
M0024674 LDHMOCON_00004 3858 3 Skin 0.17 protein_coding missense_variant MODERATE 346C>A Pro116Thr
M0024675 LDHMOCON_00004 3859 3 Skin 0.17 protein_coding missense_variant MODERATE 347C>A Pro116His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
LDHMOCON_00030 AEW79209.1|GH1 100 0 1 476 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term