Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C14
  Reference Plasmid   1111525849742850_bin.18__k141_453218
  Reference Plasmid Size   17427
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0024849 JPCNAODB_00007 6363 4 Skin 0.57 protein_coding synonymous_variant LOW 30G>A Ala10Ala
M0024850 JPCNAODB_00007 6543 3 Skin 0.43 protein_coding synonymous_variant LOW 210T>C Arg70Arg
M0024851 JPCNAODB_00007 6705 5 Skin 0.71 protein_coding synonymous_variant LOW 372A>G Gln124Gln
M0024852 JPCNAODB_00007 6708 3 Skin 0.43 protein_coding synonymous_variant LOW 375T>C Gly125Gly
M0024853 JPCNAODB_00007 6796 5 Skin 0.71 protein_coding missense_variant MODERATE 463A>G Ser155Gly
M0024854 JPCNAODB_00007 6797 5 Skin 0.71 protein_coding missense_variant MODERATE 464G>C Ser155Thr
M0024855 JPCNAODB_00007 6868 4 Skin 0.57 protein_coding missense_variant MODERATE 535G>C Val179Leu
M0024856 JPCNAODB_00007 7056 3 Skin 0.43 protein_coding synonymous_variant LOW 723A>C Gly241Gly
M0024857 JPCNAODB_00007 7134 3 Skin 0.43 protein_coding synonymous_variant LOW 801A>G Arg267Arg
M0024858 JPCNAODB_00007 7166 3 Skin 0.43 protein_coding missense_variant MODERATE 833T>C Ile278Thr
M0024859 JPCNAODB_00007 7350 3 Skin 0.43 protein_coding synonymous_variant LOW 1017C>T Ala339Ala
M0024860 JPCNAODB_00007 7363 3 Skin 0.43 protein_coding missense_variant MODERATE 1030G>A Gly344Ser
M0024861 JPCNAODB_00007 7462 3 Skin 0.43 protein_coding missense_variant MODERATE 1129C>G Leu377Val
M0024862 JPCNAODB_00007 7476 3 Skin 0.43 protein_coding synonymous_variant LOW 1143A>G Ala381Ala
M0024863 JPCNAODB_00008 7739 3 Skin 0.43 protein_coding synonymous_variant LOW 81T>G Leu27Leu
M0024864 JPCNAODB_00008 8029 4 Skin 0.57 protein_coding missense_variant MODERATE 371T>C Ile124Thr
M0024865 JPCNAODB_00008 8194 4 Skin 0.57 protein_coding missense_variant MODERATE 536G>C Gly179Ala
M0024866 JPCNAODB_00008 8210 4 Skin 0.57 protein_coding synonymous_variant LOW 552T>C Gly184Gly
M0024867 JPCNAODB_00008 8226 4 Skin 0.57 protein_coding missense_variant MODERATE 568A>C Thr190Pro
M0024868 JPCNAODB_00008 8227 4 Skin 0.57 protein_coding missense_variant MODERATE 569C>T Thr190Ile
M0024869 JPCNAODB_00008 8241 4 Skin 0.57 protein_coding missense_variant MODERATE 583A>G Ile195Val
M0024870 JPCNAODB_00008 8270 4 Skin 0.57 protein_coding synonymous_variant LOW 612T>C Gly204Gly
M0024871 JPCNAODB_00008 8288 3 Skin 0.43 protein_coding synonymous_variant LOW 630A>G Pro210Pro
M0024872 JPCNAODB_00008 8402 3 Skin 0.43 protein_coding synonymous_variant LOW 744G>A Ala248Ala
M0024873 JPCNAODB_00008 8411 4 Skin 0.57 protein_coding synonymous_variant LOW 753T>C Gly251Gly
M0024874 JPCNAODB_00008 8423 4 Skin 0.57 protein_coding synonymous_variant LOW 765G>A Ala255Ala
M0024875 JPCNAODB_00008 8450 4 Skin 0.57 protein_coding synonymous_variant LOW 792G>C Gly264Gly
M0024876 JPCNAODB_00008 8459 3 Skin 0.43 protein_coding synonymous_variant LOW 801G>C Thr267Thr
M0024877 JPCNAODB_00008 8477 4 Skin 0.57 protein_coding synonymous_variant LOW 819T>A Ala273Ala
M0024878 JPCNAODB_00008 8483 3 Skin 0.43 protein_coding synonymous_variant LOW 825A>G Val275Val
M0024879 JPCNAODB_00008 8495 4 Skin 0.57 protein_coding missense_variant MODERATE 837G>C Arg279Ser
M0024880 JPCNAODB_00008 8528 4 Skin 0.57 protein_coding synonymous_variant LOW 870T>C Gly290Gly
M0024881 JPCNAODB_00008 8567 3 Skin 0.43 protein_coding synonymous_variant LOW 909G>A Ala303Ala
M0024882 JPCNAODB_00008 8633 4 Skin 0.57 protein_coding synonymous_variant LOW 975G>C Ala325Ala
M0024883 JPCNAODB_00008 8705 3 Skin 0.43 protein_coding synonymous_variant LOW 1047T>G Val349Val
M0024884 JPCNAODB_00008 8714 4 Skin 0.57 protein_coding synonymous_variant LOW 1056T>A Gly352Gly
M0024885 JPCNAODB_00008 8738 4 Skin 0.57 protein_coding synonymous_variant LOW 1080G>A Ala360Ala
M0024886 JPCNAODB_00008 8765 3 Skin 0.43 protein_coding synonymous_variant LOW 1107T>C Phe369Phe
M0024887 JPCNAODB_00008 8780 3 Skin 0.43 protein_coding synonymous_variant LOW 1122A>G Ala374Ala
M0024888 JPCNAODB_00008 8798 3 Skin 0.43 protein_coding synonymous_variant LOW 1140G>C Ala380Ala
M0024889 JPCNAODB_00008 8807 3 Skin 0.43 protein_coding synonymous_variant LOW 1149T>A Gly383Gly
M0024890 JPCNAODB_00005 8849 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3333A>G None
M0024891 JPCNAODB_00005 8887 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3371G>T None
M0024892 JPCNAODB_00005 8964 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3448C>T None
M0024893 JPCNAODB_00005 8966 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3450C>T None
M0024894 JPCNAODB_00005 8968 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3452G>C None
M0024895 JPCNAODB_00005 8971 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3455G>T None
M0024896 JPCNAODB_00005 9003 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3487G>A None
M0024897 JPCNAODB_00005 9053 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3537A>G None
M0024898 JPCNAODB_00005 9070 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -3554A>G None
M0024899 JPCNAODB_00005 9586 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -4070G>T None
M0024900 JPCNAODB_00010 9652 3 Skin 0.43 protein_coding synonymous_variant LOW 9A>T Val3Val
M0024901 JPCNAODB_00010 9820 3 Skin 0.43 protein_coding synonymous_variant LOW 177A>G Glu59Glu
M0024902 JPCNAODB_00001 77 3 Skin 0.43 protein_coding synonymous_variant LOW 54C>G Leu18Leu
M0024903 JPCNAODB_00001 114 3 Skin 0.43 protein_coding missense_variant MODERATE 91G>A Val31Ile
M0024904 JPCNAODB_00001 119 3 Skin 0.43 protein_coding synonymous_variant LOW 96G>T Gly32Gly
M0024905 JPCNAODB_00001 164 3 Skin 0.43 protein_coding synonymous_variant LOW 141C>T Leu47Leu
M0024906 JPCNAODB_00001 173 3 Skin 0.43 protein_coding synonymous_variant LOW 150T>G Gly50Gly
M0024907 JPCNAODB_00001 209 3 Skin 0.43 protein_coding synonymous_variant LOW 186T>C Phe62Phe
M0024908 JPCNAODB_00001 236 3 Skin 0.43 protein_coding synonymous_variant LOW 213A>C Ala71Ala
M0024909 JPCNAODB_00001 239 3 Skin 0.43 protein_coding synonymous_variant LOW 216C>A Ala72Ala
M0024910 JPCNAODB_00001 350 3 Skin 0.43 protein_coding synonymous_variant LOW 327T>C Gly109Gly
M0024911 JPCNAODB_00001 419 3 Skin 0.43 protein_coding synonymous_variant LOW 396T>C Ala132Ala
M0024912 JPCNAODB_00001 466 3 Skin 0.43 protein_coding missense_variant MODERATE 443T>C Val148Ala
M0024913 JPCNAODB_00001 468 3 Skin 0.43 protein_coding missense_variant MODERATE 445G>C Ala149Pro
M0024914 JPCNAODB_00001 485 3 Skin 0.43 protein_coding synonymous_variant LOW 462G>C Ala154Ala
M0024915 JPCNAODB_00002 499 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -80A>C None
M0024916 JPCNAODB_00002 541 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -38C>A None
M0024917 JPCNAODB_00002 588 3 Skin 0.43 protein_coding missense_variant MODERATE 10T>C Ser4Pro
M0024918 JPCNAODB_00002 998 3 Skin 0.43 protein_coding synonymous_variant LOW 420T>G Ala140Ala
M0024919 JPCNAODB_00002 1007 3 Skin 0.43 protein_coding synonymous_variant LOW 429A>C Ala143Ala
M0024920 JPCNAODB_00002 1010 3 Skin 0.43 protein_coding synonymous_variant LOW 432C>T Arg144Arg
M0024921 JPCNAODB_00002 1125 3 Skin 0.43 protein_coding missense_variant MODERATE 547G>A Asp183Asn
M0024922 JPCNAODB_00002 1304 4 Skin 0.57 protein_coding synonymous_variant LOW 726T>C Phe242Phe
M0024923 JPCNAODB_00002 1424 4 Skin 0.57 protein_coding synonymous_variant LOW 846T>C Ser282Ser
M0024924 JPCNAODB_00002 1520 3 Skin 0.43 protein_coding synonymous_variant LOW 942A>G Thr314Thr
M0024925 JPCNAODB_00002 1634 3 Skin 0.43 protein_coding synonymous_variant LOW 1056T>C Asp352Asp
M0024926 JPCNAODB_00002 1703 4 Skin 0.57 protein_coding synonymous_variant LOW 1125T>C Ala375Ala
M0024927 JPCNAODB_00003 2232 5 Skin 0.71 protein_coding synonymous_variant LOW 387A>G Ala129Ala
M0024928 JPCNAODB_00003 2400 5 Skin 0.71 protein_coding synonymous_variant LOW 555A>G Pro185Pro
M0024929 JPCNAODB_00003 2460 5 Skin 0.71 protein_coding synonymous_variant LOW 615G>C Gly205Gly
M0024930 JPCNAODB_00003 2697 4 Skin 0.57 protein_coding synonymous_variant LOW 852T>C Ser284Ser
M0024931 JPCNAODB_00003 2787 5 Skin 0.71 protein_coding synonymous_variant LOW 942A>G Pro314Pro
M0024932 JPCNAODB_00003 2799 5 Skin 0.71 protein_coding synonymous_variant LOW 954A>G Glu318Glu
M0024933 JPCNAODB_00003 2886 5 Skin 0.71 protein_coding synonymous_variant LOW 1041A>G Glu347Glu
M0024934 JPCNAODB_00003 2910 3 Skin 0.43 protein_coding synonymous_variant LOW 1065C>G Val355Val
M0024935 JPCNAODB_00003 2922 3 Skin 0.43 protein_coding synonymous_variant LOW 1077T>C Gly359Gly
M0024936 JPCNAODB_00003 2925 3 Skin 0.43 protein_coding synonymous_variant LOW 1080C>G Ala360Ala
M0024937 JPCNAODB_00003 2928 3 Skin 0.43 protein_coding synonymous_variant LOW 1083A>G Pro361Pro
M0024938 JPCNAODB_00003 2955 3 Skin 0.43 protein_coding synonymous_variant LOW 1110T>C Phe370Phe
M0024939 JPCNAODB_00003 2965 3 Skin 0.43 protein_coding missense_variant MODERATE 1120G>A Asp374Asn
M0024940 JPCNAODB_00003 2973 3 Skin 0.43 protein_coding synonymous_variant LOW 1128G>C Ala376Ala
M0024941 JPCNAODB_00003 2976 3 Skin 0.43 protein_coding synonymous_variant LOW 1131T>C Ala377Ala
M0024942 JPCNAODB_00003 3006 3 Skin 0.43 protein_coding synonymous_variant LOW 1161C>T Asp387Asp
M0024943 JPCNAODB_00003 3009 3 Skin 0.43 protein_coding synonymous_variant LOW 1164A>G Ser388Ser
M0024944 JPCNAODB_00003 3090 3 Skin 0.43 protein_coding synonymous_variant LOW 1245T>C Gly415Gly
M0024945 JPCNAODB_00003 3204 3 Skin 0.43 protein_coding synonymous_variant LOW 1359G>A Glu453Glu
M0024946 JPCNAODB_00004 3499 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -69G>A None
M0024947 JPCNAODB_00004 3500 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -68A>C None
M0024948 JPCNAODB_00004 3553 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -15A>G None
M0024949 JPCNAODB_00004 3615 3 Skin 0.43 protein_coding synonymous_variant LOW 48T>C Ala16Ala
M0024950 JPCNAODB_00004 3666 3 Skin 0.43 protein_coding synonymous_variant LOW 99T>C Val33Val
M0024951 JPCNAODB_00004 3708 3 Skin 0.43 protein_coding synonymous_variant LOW 141T>C Val47Val
M0024952 JPCNAODB_00004 3734 3 Skin 0.43 protein_coding missense_variant MODERATE 167T>C Val56Ala
M0024953 JPCNAODB_00004 3744 3 Skin 0.43 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0024954 JPCNAODB_00004 3762 5 Skin 0.71 protein_coding synonymous_variant LOW 195A>G Gln65Gln
M0024955 JPCNAODB_00004 3892 3 Skin 0.43 protein_coding missense_variant MODERATE 325C>G Gln109Glu
M0024956 JPCNAODB_00004 3894 3 Skin 0.43 protein_coding synonymous_variant LOW 327G>A Gln109Gln
M0024957 JPCNAODB_00004 3960 4 Skin 0.57 protein_coding synonymous_variant LOW 393T>C Gly131Gly
M0024958 JPCNAODB_00004 3990 3 Skin 0.43 protein_coding synonymous_variant LOW 423C>T Ala141Ala
M0024959 JPCNAODB_00004 4056 5 Skin 0.71 protein_coding synonymous_variant LOW 489C>T Gly163Gly
M0024960 JPCNAODB_00006 4427 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1488T>C None
M0024961 JPCNAODB_00006 4456 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1459G>T None
M0024962 JPCNAODB_00006 4464 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -1451G>A None
M0024963 JPCNAODB_00006 4476 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1439A>G None
M0024964 JPCNAODB_00006 4483 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1432A>G None
M0024965 JPCNAODB_00006 4484 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -1431G>A None
M0024966 JPCNAODB_00006 4492 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1423G>T None
M0024967 JPCNAODB_00006 4499 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -1416A>G None
M0024968 JPCNAODB_00006 4500 5 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1415C>T None
M0024969 JPCNAODB_00005 4555 5 Skin 0.71 protein_coding missense_variant MODERATE 962C>A Ala321Glu
M0024970 JPCNAODB_00005 4587 5 Skin 0.71 protein_coding synonymous_variant LOW 930G>C Arg310Arg
M0024971 JPCNAODB_00005 4629 5 Skin 0.71 protein_coding synonymous_variant LOW 888T>C Ser296Ser
M0024972 JPCNAODB_00005 4668 5 Skin 0.71 protein_coding synonymous_variant LOW 849C>G Arg283Arg
M0024973 JPCNAODB_00005 4698 5 Skin 0.71 protein_coding synonymous_variant LOW 819G>C Arg273Arg
M0024974 JPCNAODB_00005 4752 4 Skin 0.57 protein_coding synonymous_variant LOW 765T>C Ile255Ile
M0024975 JPCNAODB_00005 4797 5 Skin 0.71 protein_coding synonymous_variant LOW 720A>G Pro240Pro
M0024976 JPCNAODB_00005 4800 3 Skin 0.43 protein_coding synonymous_variant LOW 717C>T Ala239Ala
M0024977 JPCNAODB_00005 4803 4 Skin 0.57 protein_coding synonymous_variant LOW 714C>T Ile238Ile
M0024978 JPCNAODB_00005 4813 3 Skin 0.43 protein_coding missense_variant MODERATE 704T>C Val235Ala
M0024979 JPCNAODB_00005 4893 3 Skin 0.43 protein_coding synonymous_variant LOW 624C>G Pro208Pro
M0024980 JPCNAODB_00005 4917 5 Skin 0.71 protein_coding synonymous_variant LOW 600T>C Ile200Ile
M0024981 JPCNAODB_00005 4965 5 Skin 0.71 protein_coding synonymous_variant LOW 552C>G Arg184Arg
M0024982 JPCNAODB_00005 4971 5 Skin 0.71 protein_coding synonymous_variant LOW 546T>C Ala182Ala
M0024983 JPCNAODB_00005 4995 5 Skin 0.71 protein_coding synonymous_variant LOW 522G>C Thr174Thr
M0024984 JPCNAODB_00005 5004 5 Skin 0.71 protein_coding synonymous_variant LOW 513T>C Arg171Arg
M0024985 JPCNAODB_00005 5028 4 Skin 0.57 protein_coding synonymous_variant LOW 489T>G Gly163Gly
M0024986 JPCNAODB_00005 5103 5 Skin 0.71 protein_coding synonymous_variant LOW 414C>T Asp138Asp
M0024987 JPCNAODB_00005 5190 5 Skin 0.71 protein_coding synonymous_variant LOW 327T>C Ile109Ile
M0024988 JPCNAODB_00005 5222 5 Skin 0.71 protein_coding missense_variant MODERATE 295A>T Asn99Tyr
M0024989 JPCNAODB_00005 5301 5 Skin 0.71 protein_coding synonymous_variant LOW 216C>T Arg72Arg
M0024990 JPCNAODB_00005 5329 5 Skin 0.71 protein_coding missense_variant MODERATE 188C>T Pro63Leu
M0024991 JPCNAODB_00005 5379 5 Skin 0.71 protein_coding synonymous_variant LOW 138C>T Asp46Asp
M0024992 JPCNAODB_00005 5383 5 Skin 0.71 protein_coding missense_variant MODERATE 134T>C Val45Ala
M0024993 JPCNAODB_00005 5394 5 Skin 0.71 protein_coding synonymous_variant LOW 123T>C Ala41Ala
M0024994 JPCNAODB_00005 5427 5 Skin 0.71 protein_coding synonymous_variant LOW 90G>A Pro30Pro
M0024995 JPCNAODB_00005 5493 3 Skin 0.43 protein_coding synonymous_variant LOW 24A>G Gln8Gln
M0024996 JPCNAODB_00006 5992 4 Skin 0.57 protein_coding synonymous_variant LOW 78A>C Gly26Gly
M0024997 JPCNAODB_00006 6004 4 Skin 0.57 protein_coding synonymous_variant LOW 90A>G Gly30Gly
M0024998 JPCNAODB_00006 6091 4 Skin 0.57 protein_coding synonymous_variant LOW 177G>C Leu59Leu
M0024999 JPCNAODB_00006 6124 4 Skin 0.57 protein_coding synonymous_variant LOW 210C>T Gly70Gly
M0025000 JPCNAODB_00006 6145 4 Skin 0.57 protein_coding synonymous_variant LOW 231C>T Tyr77Tyr
M0025001 JPCNAODB_00006 6185 4 Skin 0.57 protein_coding missense_variant MODERATE 271T>C Tyr91His
M0025002 JPCNAODB_00006 6259 4 Skin 0.57 protein_coding synonymous_variant LOW 345C>T Ala115Ala
M0025003 JPCNAODB_00005 6315 4 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -799A>G None
M0025004 JPCNAODB_00007 6489 4 Skin 0.57 protein_coding synonymous_variant LOW 156T>C Gly52Gly
M0025005 JPCNAODB_00007 6606 3 Skin 0.43 protein_coding synonymous_variant LOW 273C>G Ala91Ala
M0025006 JPCNAODB_00007 6678 3 Skin 0.43 protein_coding synonymous_variant LOW 345A>G Ser115Ser
M0025007 JPCNAODB_00005 4929 3 Skin 0.43 protein_coding synonymous_variant LOW 588T>C Ala196Ala
M0025008 JPCNAODB_00005 4932 3 Skin 0.43 protein_coding synonymous_variant LOW 585G>A Gly195Gly
M0025009 JPCNAODB_00005 5160 3 Skin 0.43 protein_coding synonymous_variant LOW 357C>T Asn119Asn
M0025010 JPCNAODB_00005 5175 3 Skin 0.43 protein_coding synonymous_variant LOW 342G>C Pro114Pro
M0025011 JPCNAODB_00005 5237 3 Skin 0.43 protein_coding missense_variant MODERATE 280G>A Asp94Asn
M0025012 JPCNAODB_00005 5325 3 Skin 0.43 protein_coding synonymous_variant LOW 192A>C Gly64Gly
M0025013 JPCNAODB_00003 2070 3 Skin 0.43 protein_coding synonymous_variant LOW 225A>C Ala75Ala
M0025014 JPCNAODB_00003 2751 3 Skin 0.43 protein_coding synonymous_variant LOW 906T>C Asp302Asp
M0118212 JPCNAODB_00008 7739 3 Oral 0.60 protein_coding synonymous_variant LOW 81T>G Leu27Leu
M0118213 JPCNAODB_00008 7784 3 Oral 0.60 protein_coding synonymous_variant LOW 126T>C Leu42Leu
M0118214 JPCNAODB_00008 8029 3 Oral 0.60 protein_coding missense_variant MODERATE 371T>C Ile124Thr
M0118215 JPCNAODB_00008 8113 3 Oral 0.60 protein_coding missense_variant MODERATE 455T>A Phe152Tyr
M0118216 JPCNAODB_00008 8117 3 Oral 0.60 protein_coding synonymous_variant LOW 459T>C Ser153Ser
M0118217 JPCNAODB_00008 8126 3 Oral 0.60 protein_coding synonymous_variant LOW 468G>C Gly156Gly
M0118218 JPCNAODB_00008 8135 3 Oral 0.60 protein_coding synonymous_variant LOW 477C>G Gly159Gly
M0118219 JPCNAODB_00008 8138 3 Oral 0.60 protein_coding synonymous_variant LOW 480C>G Ala160Ala
M0118220 JPCNAODB_00008 8151 3 Oral 0.60 protein_coding missense_variant MODERATE 493G>A Ala165Thr
M0118221 JPCNAODB_00008 8210 3 Oral 0.60 protein_coding synonymous_variant LOW 552T>C Gly184Gly
M0118222 JPCNAODB_00008 8226 3 Oral 0.60 protein_coding missense_variant MODERATE 568A>C Thr190Pro
M0118223 JPCNAODB_00008 8227 3 Oral 0.60 protein_coding missense_variant MODERATE 569C>T Thr190Ile
M0118224 JPCNAODB_00008 8241 3 Oral 0.60 protein_coding missense_variant MODERATE 583A>G Ile195Val
M0118225 JPCNAODB_00008 8270 3 Oral 0.60 protein_coding synonymous_variant LOW 612T>C Gly204Gly
M0118226 JPCNAODB_00008 8450 3 Oral 0.60 protein_coding synonymous_variant LOW 792G>C Gly264Gly
M0118227 JPCNAODB_00008 8459 3 Oral 0.60 protein_coding synonymous_variant LOW 801G>C Thr267Thr
M0118228 JPCNAODB_00008 8477 3 Oral 0.60 protein_coding synonymous_variant LOW 819T>A Ala273Ala
M0118229 JPCNAODB_00008 8495 3 Oral 0.60 protein_coding missense_variant MODERATE 837G>C Arg279Ser
M0118230 JPCNAODB_00008 8528 3 Oral 0.60 protein_coding synonymous_variant LOW 870T>C Gly290Gly
M0118231 JPCNAODB_00008 8705 3 Oral 0.60 protein_coding synonymous_variant LOW 1047T>C Val349Val
M0118232 JPCNAODB_00008 8714 3 Oral 0.60 protein_coding synonymous_variant LOW 1056T>G Gly352Gly
M0118233 JPCNAODB_00008 8738 3 Oral 0.60 protein_coding synonymous_variant LOW 1080G>A Ala360Ala
M0118234 JPCNAODB_00008 8765 3 Oral 0.60 protein_coding synonymous_variant LOW 1107T>C Phe369Phe
M0118235 JPCNAODB_00008 8807 3 Oral 0.60 protein_coding synonymous_variant LOW 1149T>G Gly383Gly
M0118236 JPCNAODB_00005 8966 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3450C>T None
M0118237 JPCNAODB_00005 8968 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3452G>C None
M0118238 JPCNAODB_00005 8971 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3455G>T None
M0118239 JPCNAODB_00005 9003 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3487G>A None
M0118240 JPCNAODB_00005 9014 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3498C>T None
M0118241 JPCNAODB_00005 9053 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -3537A>G None
M0118242 JPCNAODB_00005 9070 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3554A>G None
M0118243 JPCNAODB_00009 9262 3 Oral 0.60 protein_coding synonymous_variant LOW 171T>C Gly57Gly
M0118244 JPCNAODB_00009 9267 3 Oral 0.60 protein_coding missense_variant MODERATE 176G>C Gly59Ala
M0118245 JPCNAODB_00009 9269 3 Oral 0.60 protein_coding synonymous_variant LOW 178T>C Leu60Leu
M0118246 JPCNAODB_00009 9298 3 Oral 0.60 protein_coding synonymous_variant LOW 207A>G Pro69Pro
M0118247 JPCNAODB_00009 9349 4 Oral 0.80 protein_coding synonymous_variant LOW 258T>C His86His
M0118248 JPCNAODB_00009 9352 3 Oral 0.60 protein_coding synonymous_variant LOW 261T>G Ala87Ala
M0118249 JPCNAODB_00009 9436 4 Oral 0.80 protein_coding synonymous_variant LOW 345C>T Ala115Ala
M0118250 JPCNAODB_00009 9455 4 Oral 0.80 protein_coding missense_variant MODERATE 364G>T Ala122Ser
M0118251 JPCNAODB_00005 9494 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -3978T>G None
M0118252 JPCNAODB_00005 9530 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -4014A>G None
M0118253 JPCNAODB_00005 9542 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -4026G>A None
M0118254 JPCNAODB_00005 9586 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -4070G>A None
M0118255 JPCNAODB_00010 9652 4 Oral 0.80 protein_coding synonymous_variant LOW 9A>T Val3Val
M0118256 JPCNAODB_00010 9694 3 Oral 0.60 protein_coding synonymous_variant LOW 51T>C Tyr17Tyr
M0118257 JPCNAODB_00010 9916 4 Oral 0.80 protein_coding synonymous_variant LOW 273G>T Ala91Ala
M0118258 JPCNAODB_00010 9922 3 Oral 0.60 protein_coding synonymous_variant LOW 279T>C Gly93Gly
M0118259 JPCNAODB_00010 9979 3 Oral 0.60 protein_coding missense_variant MODERATE 336C>G Asn112Lys
M0118260 JPCNAODB_00010 10055 3 Oral 0.60 protein_coding missense_variant MODERATE 412A>G Thr138Ala
M0118261 JPCNAODB_00010 10186 3 Oral 0.60 protein_coding synonymous_variant LOW 543G>C Ala181Ala
M0118262 JPCNAODB_00010 10192 4 Oral 0.80 protein_coding synonymous_variant LOW 549A>G Pro183Pro
M0118263 JPCNAODB_00011 10259 3 Oral 0.60 protein_coding missense_variant MODERATE 1380T>G Asp460Glu
M0118264 JPCNAODB_00011 10400 4 Oral 0.80 protein_coding synonymous_variant LOW 1239G>C Ala413Ala
M0118265 JPCNAODB_00011 10538 3 Oral 0.60 protein_coding synonymous_variant LOW 1101A>G Ala367Ala
M0118266 JPCNAODB_00011 10724 3 Oral 0.60 protein_coding synonymous_variant LOW 915C>G Ala305Ala
M0118267 JPCNAODB_00011 10793 3 Oral 0.60 protein_coding synonymous_variant LOW 846G>C Val282Val
M0118268 JPCNAODB_00011 10805 3 Oral 0.60 protein_coding synonymous_variant LOW 834A>G Arg278Arg
M0118269 JPCNAODB_00010 9853 3 Oral 0.60 protein_coding synonymous_variant LOW 210A>G Ala70Ala
M0118270 JPCNAODB_00011 10349 3 Oral 0.60 protein_coding synonymous_variant LOW 1290C>T Cys430Cys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term