Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C15
  Reference Plasmid   1111525849742850_bin.18__k141_98544
  Reference Plasmid Size   10062
  Reference Plasmid GC Content   0.65
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0025015 DLGNENJJ_00006 6330 3 Skin 0.60 protein_coding synonymous_variant LOW 276G>A Glu92Glu
M0025016 DLGNENJJ_00007 6656 3 Skin 0.60 protein_coding synonymous_variant LOW 69A>G Leu23Leu
M0025017 DLGNENJJ_00009 9066 3 Skin 0.60 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0025018 DLGNENJJ_00009 9072 3 Skin 0.60 protein_coding synonymous_variant LOW 96C>G Ala32Ala
M0025019 DLGNENJJ_00009 9129 3 Skin 0.60 protein_coding synonymous_variant LOW 153T>A Ala51Ala
M0025020 DLGNENJJ_00009 9144 3 Skin 0.60 protein_coding synonymous_variant LOW 168A>G Ala56Ala
M0025021 DLGNENJJ_00009 9147 3 Skin 0.60 protein_coding synonymous_variant LOW 171G>A Gln57Gln
M0025022 DLGNENJJ_00009 9190 3 Skin 0.60 protein_coding synonymous_variant LOW 214T>C Leu72Leu
M0025023 DLGNENJJ_00009 9285 3 Skin 0.60 protein_coding synonymous_variant LOW 309T>C Thr103Thr
M0025024 DLGNENJJ_00009 9316 4 Skin 0.80 protein_coding missense_variant MODERATE 340C>A Pro114Thr
M0025025 DLGNENJJ_00009 9324 4 Skin 0.80 protein_coding synonymous_variant LOW 348C>A Pro116Pro
M0025026 DLGNENJJ_00009 9327 3 Skin 0.60 protein_coding synonymous_variant LOW 351C>G Pro117Pro
M0025027 DLGNENJJ_00009 9329 3 Skin 0.60 protein_coding missense_variant MODERATE 353G>T Gly118Val
M0025028 DLGNENJJ_00008 9394 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -770G>C None
M0118271 DLGNENJJ_00002 1741 3 Oral 0.50 protein_coding synonymous_variant LOW 588G>C Arg196Arg
M0118272 DLGNENJJ_00002 1873 3 Oral 0.50 protein_coding synonymous_variant LOW 720C>T Ile240Ile
M0118273 DLGNENJJ_00003 2139 3 Oral 0.50 protein_coding synonymous_variant LOW 573T>C Val191Val
M0118274 DLGNENJJ_00003 2142 3 Oral 0.50 protein_coding synonymous_variant LOW 570G>A Lys190Lys
M0118275 DLGNENJJ_00003 2193 3 Oral 0.50 protein_coding synonymous_variant LOW 519C>T Asp173Asp
M0118276 DLGNENJJ_00003 2196 3 Oral 0.50 protein_coding synonymous_variant LOW 516G>C Val172Val
M0118277 DLGNENJJ_00003 2220 3 Oral 0.50 protein_coding synonymous_variant LOW 492C>A Gly164Gly
M0118278 DLGNENJJ_00003 2235 3 Oral 0.50 protein_coding synonymous_variant LOW 477T>C Ser159Ser
M0118279 DLGNENJJ_00003 2358 3 Oral 0.50 protein_coding synonymous_variant LOW 354T>C His118His
M0118280 DLGNENJJ_00003 2391 3 Oral 0.50 protein_coding synonymous_variant LOW 321C>T Arg107Arg
M0118281 DLGNENJJ_00003 2406 3 Oral 0.50 protein_coding synonymous_variant LOW 306G>A Gln102Gln
M0118282 DLGNENJJ_00003 2421 3 Oral 0.50 protein_coding synonymous_variant LOW 291G>A Gly97Gly
M0118283 DLGNENJJ_00003 2427 3 Oral 0.50 protein_coding synonymous_variant LOW 285A>G Arg95Arg
M0118284 DLGNENJJ_00004 2947 3 Oral 0.50 protein_coding synonymous_variant LOW 1014C>G Leu338Leu
M0118285 DLGNENJJ_00004 2984 3 Oral 0.50 protein_coding missense_variant MODERATE 977A>G Lys326Arg
M0118286 DLGNENJJ_00004 2992 3 Oral 0.50 protein_coding missense_variant MODERATE 969T>G His323Gln
M0118287 DLGNENJJ_00004 2998 3 Oral 0.50 protein_coding missense_variant MODERATE 963G>C Trp321Cys
M0118288 DLGNENJJ_00004 3000 3 Oral 0.50 protein_coding missense_variant MODERATE 961T>C Trp321Arg
M0118289 DLGNENJJ_00004 3004 3 Oral 0.50 protein_coding missense_variant MODERATE 957T>G Ile319Met
M0118290 DLGNENJJ_00004 3016 3 Oral 0.50 protein_coding synonymous_variant LOW 945T>C Ala315Ala
M0118291 DLGNENJJ_00004 3277 3 Oral 0.50 protein_coding synonymous_variant LOW 684C>T Tyr228Tyr
M0118292 DLGNENJJ_00004 3351 3 Oral 0.50 protein_coding missense_variant MODERATE 610C>G Gln204Glu
M0118293 DLGNENJJ_00004 3355 3 Oral 0.50 protein_coding synonymous_variant LOW 606C>T His202His
M0118294 DLGNENJJ_00004 3358 3 Oral 0.50 protein_coding synonymous_variant LOW 603C>G Pro201Pro
M0118295 DLGNENJJ_00004 3385 3 Oral 0.50 protein_coding synonymous_variant LOW 576T>C His192His
M0118296 DLGNENJJ_00004 3672 3 Oral 0.50 protein_coding missense_variant MODERATE 289A>G Asn97Asp
M0118297 DLGNENJJ_00004 3745 4 Oral 0.67 protein_coding synonymous_variant LOW 216G>C Gly72Gly
M0118298 DLGNENJJ_00004 3748 4 Oral 0.67 protein_coding missense_variant MODERATE 213G>C Glu71Asp
M0118299 DLGNENJJ_00004 3778 3 Oral 0.50 protein_coding synonymous_variant LOW 183T>C Thr61Thr
M0118300 DLGNENJJ_00004 3784 3 Oral 0.50 protein_coding synonymous_variant LOW 177T>C Phe59Phe
M0118301 DLGNENJJ_00004 3885 4 Oral 0.67 protein_coding missense_variant MODERATE 76C>G Pro26Ala
M0118302 DLGNENJJ_00004 3913 4 Oral 0.67 protein_coding synonymous_variant LOW 48C>T Gly16Gly
M0118303 DLGNENJJ_00003 3989 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -1278A>G None
M0118304 DLGNENJJ_00003 4013 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -1302A>G None
M0118305 DLGNENJJ_00003 4045 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -1334T>C None
M0118306 DLGNENJJ_00003 4131 3 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -1420C>T None
M0118307 DLGNENJJ_00003 4144 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -1433T>C None
M0118308 DLGNENJJ_00005 4524 3 Oral 0.50 protein_coding synonymous_variant LOW 123T>C Thr41Thr
M0118309 DLGNENJJ_00005 4875 4 Oral 0.67 protein_coding synonymous_variant LOW 474T>C His158His
M0118310 DLGNENJJ_00005 4896 4 Oral 0.67 protein_coding synonymous_variant LOW 495C>T Gly165Gly
M0118311 DLGNENJJ_00005 4989 4 Oral 0.67 protein_coding synonymous_variant LOW 588T>C Asp196Asp
M0118312 DLGNENJJ_00005 5061 4 Oral 0.67 protein_coding synonymous_variant LOW 660T>A Ala220Ala
M0118313 DLGNENJJ_00005 5118 4 Oral 0.67 protein_coding synonymous_variant LOW 717T>G Leu239Leu
M0118314 DLGNENJJ_00005 5394 4 Oral 0.67 protein_coding synonymous_variant LOW 993A>G Glu331Glu
M0118315 DLGNENJJ_00005 5421 4 Oral 0.67 protein_coding synonymous_variant LOW 1020T>C Thr340Thr
M0118316 DLGNENJJ_00005 5484 3 Oral 0.50 protein_coding synonymous_variant LOW 1083G>C Gly361Gly
M0118317 DLGNENJJ_00005 5505 3 Oral 0.50 protein_coding synonymous_variant LOW 1104T>C Ala368Ala
M0118318 DLGNENJJ_00005 5679 3 Oral 0.50 protein_coding synonymous_variant LOW 1278G>C Gly426Gly
M0118319 DLGNENJJ_00005 5724 3 Oral 0.50 protein_coding missense_variant MODERATE 1323C>G Asp441Glu
M0118320 DLGNENJJ_00005 5757 4 Oral 0.67 protein_coding synonymous_variant LOW 1356C>T His452His
M0118321 DLGNENJJ_00005 5765 4 Oral 0.67 protein_coding missense_variant MODERATE 1364A>G His455Arg
M0118322 DLGNENJJ_00005 5784 3 Oral 0.50 protein_coding synonymous_variant LOW 1383G>A Glu461Glu
M0118323 DLGNENJJ_00005 5866 4 Oral 0.67 protein_coding missense_variant MODERATE 1465G>A Asp489Asn
M0118324 DLGNENJJ_00005 5877 3 Oral 0.50 protein_coding synonymous_variant LOW 1476G>C Arg492Arg
M0118325 DLGNENJJ_00005 5887 3 Oral 0.50 protein_coding missense_variant MODERATE 1486C>A His496Asn
M0118326 DLGNENJJ_00003 5947 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3236C>G None
M0118327 DLGNENJJ_00006 6099 3 Oral 0.50 protein_coding synonymous_variant LOW 45C>G Val15Val
M0118328 DLGNENJJ_00006 6123 4 Oral 0.67 protein_coding synonymous_variant LOW 69T>C Arg23Arg
M0118329 DLGNENJJ_00006 6126 4 Oral 0.67 protein_coding synonymous_variant LOW 72T>C Ser24Ser
M0118330 DLGNENJJ_00006 6141 3 Oral 0.50 protein_coding synonymous_variant LOW 87G>A Gly29Gly
M0118331 DLGNENJJ_00006 6214 4 Oral 0.67 protein_coding synonymous_variant LOW 160T>C Leu54Leu
M0118332 DLGNENJJ_00006 6246 3 Oral 0.50 protein_coding synonymous_variant LOW 192G>C Pro64Pro
M0118333 DLGNENJJ_00003 6481 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3770C>T None
M0118334 DLGNENJJ_00003 6482 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3771T>C None
M0118335 DLGNENJJ_00003 6484 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3773C>T None
M0118336 DLGNENJJ_00003 6485 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -3774A>G None
M0118337 DLGNENJJ_00003 6582 3 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -3871G>A None
M0118338 DLGNENJJ_00007 6656 6 Oral 1.00 protein_coding synonymous_variant LOW 69A>G Leu23Leu
M0118339 DLGNENJJ_00007 6666 4 Oral 0.67 protein_coding missense_variant MODERATE 79G>A Val27Ile
M0118340 DLGNENJJ_00007 6683 4 Oral 0.67 protein_coding synonymous_variant LOW 96T>C Val32Val
M0118341 DLGNENJJ_00007 6686 4 Oral 0.67 protein_coding synonymous_variant LOW 99A>G Gly33Gly
M0118342 DLGNENJJ_00007 6692 3 Oral 0.50 protein_coding synonymous_variant LOW 105A>G Glu35Glu
M0118343 DLGNENJJ_00007 6695 4 Oral 0.67 protein_coding synonymous_variant LOW 108T>G Leu36Leu
M0118344 DLGNENJJ_00007 6884 5 Oral 0.83 protein_coding synonymous_variant LOW 297G>C Thr99Thr
M0118345 DLGNENJJ_00007 6940 4 Oral 0.67 protein_coding missense_variant MODERATE 353A>G His118Arg
M0118346 DLGNENJJ_00003 7295 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -4584C>T None
M0118347 DLGNENJJ_00008 7326 6 Oral 1.00 protein_coding synonymous_variant LOW 1299T>C Phe433Phe
M0118348 DLGNENJJ_00008 7368 3 Oral 0.50 protein_coding synonymous_variant LOW 1257C>T Gly419Gly
M0118349 DLGNENJJ_00008 7464 6 Oral 1.00 protein_coding synonymous_variant LOW 1161G>C Pro387Pro
M0118350 DLGNENJJ_00008 7503 5 Oral 0.83 protein_coding synonymous_variant LOW 1122T>C Ile374Ile
M0118351 DLGNENJJ_00008 7518 5 Oral 0.83 protein_coding synonymous_variant LOW 1107C>T Pro369Pro
M0118352 DLGNENJJ_00008 7521 5 Oral 0.83 protein_coding synonymous_variant LOW 1104A>G Val368Val
M0118353 DLGNENJJ_00008 7524 5 Oral 0.83 protein_coding synonymous_variant LOW 1101C>G Gly367Gly
M0118354 DLGNENJJ_00008 7536 5 Oral 0.83 protein_coding synonymous_variant LOW 1089T>C Gly363Gly
M0118355 DLGNENJJ_00008 7556 4 Oral 0.67 protein_coding missense_variant MODERATE 1069G>A Ala357Thr
M0118356 DLGNENJJ_00008 7557 5 Oral 0.83 protein_coding synonymous_variant LOW 1068A>G Val356Val
M0118357 DLGNENJJ_00008 7566 3 Oral 0.50 protein_coding synonymous_variant LOW 1059T>A Gly353Gly
M0118358 DLGNENJJ_00008 7596 5 Oral 0.83 protein_coding synonymous_variant LOW 1029T>C Phe343Phe
M0118359 DLGNENJJ_00008 7602 3 Oral 0.50 protein_coding synonymous_variant LOW 1023G>A Ser341Ser
M0118360 DLGNENJJ_00008 7604 3 Oral 0.50 protein_coding missense_variant MODERATE 1021T>G Ser341Ala
M0118361 DLGNENJJ_00008 7605 3 Oral 0.50 protein_coding synonymous_variant LOW 1020C>T Phe340Phe
M0118362 DLGNENJJ_00008 7608 3 Oral 0.50 protein_coding synonymous_variant LOW 1017G>A Ala339Ala
M0118363 DLGNENJJ_00008 7620 5 Oral 0.83 protein_coding synonymous_variant LOW 1005C>A Pro335Pro
M0118364 DLGNENJJ_00008 7629 5 Oral 0.83 protein_coding synonymous_variant LOW 996A>G Glu332Glu
M0118365 DLGNENJJ_00008 7668 3 Oral 0.50 protein_coding synonymous_variant LOW 957C>T His319His
M0118366 DLGNENJJ_00008 7800 6 Oral 1.00 protein_coding synonymous_variant LOW 825G>C Ala275Ala
M0118367 DLGNENJJ_00008 7803 5 Oral 0.83 protein_coding synonymous_variant LOW 822G>A Ala274Ala
M0118368 DLGNENJJ_00008 7839 4 Oral 0.67 protein_coding synonymous_variant LOW 786G>C Gly262Gly
M0118369 DLGNENJJ_00008 7953 3 Oral 0.50 protein_coding synonymous_variant LOW 672G>C Pro224Pro
M0118370 DLGNENJJ_00008 7956 3 Oral 0.50 protein_coding synonymous_variant LOW 669G>T Ala223Ala
M0118371 DLGNENJJ_00008 7977 6 Oral 1.00 protein_coding synonymous_variant LOW 648C>G Val216Val
M0118372 DLGNENJJ_00008 7995 6 Oral 1.00 protein_coding synonymous_variant LOW 630T>C Tyr210Tyr
M0118373 DLGNENJJ_00008 8013 6 Oral 1.00 protein_coding synonymous_variant LOW 612A>G Arg204Arg
M0118374 DLGNENJJ_00008 8022 5 Oral 0.83 protein_coding synonymous_variant LOW 603C>T Tyr201Tyr
M0118375 DLGNENJJ_00008 8025 3 Oral 0.50 protein_coding synonymous_variant LOW 600C>T Gly200Gly
M0118376 DLGNENJJ_00008 8079 4 Oral 0.67 protein_coding synonymous_variant LOW 546T>C Gly182Gly
M0118377 DLGNENJJ_00008 8124 6 Oral 1.00 protein_coding synonymous_variant LOW 501T>C Ile167Ile
M0118378 DLGNENJJ_00008 8166 3 Oral 0.50 protein_coding synonymous_variant LOW 459C>T Val153Val
M0118379 DLGNENJJ_00008 8175 4 Oral 0.67 protein_coding synonymous_variant LOW 450T>C Ala150Ala
M0118380 DLGNENJJ_00008 8232 6 Oral 1.00 protein_coding synonymous_variant LOW 393C>G Pro131Pro
M0118381 DLGNENJJ_00008 8337 4 Oral 0.67 protein_coding synonymous_variant LOW 288C>G Val96Val
M0118382 DLGNENJJ_00008 8349 3 Oral 0.50 protein_coding synonymous_variant LOW 276T>C Ile92Ile
M0118383 DLGNENJJ_00008 8376 5 Oral 0.83 protein_coding synonymous_variant LOW 249C>T His83His
M0118384 DLGNENJJ_00008 8391 4 Oral 0.67 protein_coding synonymous_variant LOW 234C>G Ala78Ala
M0118385 DLGNENJJ_00008 8436 4 Oral 0.67 protein_coding synonymous_variant LOW 189A>T Ala63Ala
M0118386 DLGNENJJ_00008 8499 4 Oral 0.67 protein_coding synonymous_variant LOW 126C>T Ile42Ile
M0118387 DLGNENJJ_00008 8501 4 Oral 0.67 protein_coding missense_variant MODERATE 124A>C Ile42Leu
M0118388 DLGNENJJ_00008 8502 4 Oral 0.67 protein_coding synonymous_variant LOW 123T>C His41His
M0118389 DLGNENJJ_00008 8508 4 Oral 0.67 protein_coding synonymous_variant LOW 117T>C Gly39Gly
M0118390 DLGNENJJ_00008 8541 5 Oral 0.83 protein_coding synonymous_variant LOW 84T>C Phe28Phe
M0118391 DLGNENJJ_00008 8547 5 Oral 0.83 protein_coding synonymous_variant LOW 78G>C Gly26Gly
M0118392 DLGNENJJ_00004 8630 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -4670T>G None
M0118393 DLGNENJJ_00004 8688 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -4728C>T None
M0118394 DLGNENJJ_00004 8732 3 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -4772T>C None
M0118395 DLGNENJJ_00009 9066 5 Oral 0.83 protein_coding synonymous_variant LOW 90A>G Leu30Leu
M0118396 DLGNENJJ_00009 9072 6 Oral 1.00 protein_coding synonymous_variant LOW 96C>G Ala32Ala
M0118397 DLGNENJJ_00009 9129 6 Oral 1.00 protein_coding synonymous_variant LOW 153T>A Ala51Ala
M0118398 DLGNENJJ_00009 9144 5 Oral 0.83 protein_coding synonymous_variant LOW 168A>G Ala56Ala
M0118399 DLGNENJJ_00009 9147 6 Oral 1.00 protein_coding synonymous_variant LOW 171G>A Gln57Gln
M0118400 DLGNENJJ_00009 9190 5 Oral 0.83 protein_coding synonymous_variant LOW 214T>C Leu72Leu
M0118401 DLGNENJJ_00009 9228 4 Oral 0.67 protein_coding synonymous_variant LOW 252G>A Gln84Gln
M0118402 DLGNENJJ_00009 9285 6 Oral 1.00 protein_coding synonymous_variant LOW 309T>C Thr103Thr
M0118403 DLGNENJJ_00009 9316 4 Oral 0.67 protein_coding missense_variant MODERATE 340C>A Pro114Thr
M0118404 DLGNENJJ_00009 9324 4 Oral 0.67 protein_coding synonymous_variant LOW 348C>A Pro116Pro
M0118405 DLGNENJJ_00009 9327 4 Oral 0.67 protein_coding synonymous_variant LOW 351C>G Pro117Pro
M0118406 DLGNENJJ_00009 9329 4 Oral 0.67 protein_coding missense_variant MODERATE 353G>T Gly118Val
M0118407 DLGNENJJ_00008 9394 4 Oral 0.67 protein_coding upstream_gene_variant MODIFIER -770G>C None
M0118408 DLGNENJJ_00007 6797 3 Oral 0.50 protein_coding synonymous_variant LOW 210C>T Gly70Gly
M0118409 DLGNENJJ_00007 7005 3 Oral 0.50 protein_coding synonymous_variant LOW 418T>C Leu140Leu
M0118410 DLGNENJJ_00007 7190 3 Oral 0.50 protein_coding synonymous_variant LOW 603A>G Gln201Gln
M0118411 DLGNENJJ_00008 7353 4 Oral 0.67 protein_coding synonymous_variant LOW 1272C>G Ala424Ala
M0118412 DLGNENJJ_00008 8535 3 Oral 0.50 protein_coding synonymous_variant LOW 90G>T Gly30Gly
M0118413 DLGNENJJ_00008 8562 4 Oral 0.67 protein_coding synonymous_variant LOW 63A>C Gly21Gly
M0118414 DLGNENJJ_00004 8661 3 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -4701A>G None
M0118415 DLGNENJJ_00004 8772 3 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -4812A>C None
M0118416 DLGNENJJ_00004 3842 3 Oral 0.50 protein_coding missense_variant MODERATE 119C>T Ala40Val
M0118417 DLGNENJJ_00005 4929 3 Oral 0.50 protein_coding synonymous_variant LOW 528A>G Glu176Glu
M0118418 DLGNENJJ_00008 7773 3 Oral 0.50 protein_coding synonymous_variant LOW 852C>T Pro284Pro
M0118419 DLGNENJJ_00008 8187 3 Oral 0.50 protein_coding synonymous_variant LOW 438T>C Ser146Ser






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term