Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2107
  Reference Plasmid   1111525849742904_bin.23__k141_652026
  Reference Plasmid Size   8267
  Reference Plasmid GC Content   0.58
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0025077 EMJEGDIJ_00004 1947 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -1013C>T None
M0025078 EMJEGDIJ_00004 1984 8 Skin 0.57 protein_coding upstream_gene_variant MODIFIER -976C>T None
M0025079 EMJEGDIJ_00003 2255 3 Skin 0.21 protein_coding synonymous_variant LOW 387C>T Ile129Ile
M0025080 EMJEGDIJ_00003 2369 6 Skin 0.43 protein_coding synonymous_variant LOW 273G>A Thr91Thr
M0025081 EMJEGDIJ_00003 2392 3 Skin 0.21 protein_coding missense_variant MODERATE 250G>C Gly84Arg
M0025082 EMJEGDIJ_00003 2441 8 Skin 0.57 protein_coding missense_variant MODERATE 201A>C Gln67His
M0025083 EMJEGDIJ_00003 2480 7 Skin 0.50 protein_coding synonymous_variant LOW 162A>G Lys54Lys
M0025084 EMJEGDIJ_00003 2542 6 Skin 0.43 protein_coding missense_variant MODERATE 100G>C Asp34His
M0025085 EMJEGDIJ_00003 2552 6 Skin 0.43 protein_coding synonymous_variant LOW 90T>C Pro30Pro
M0025086 EMJEGDIJ_00003 2570 6 Skin 0.43 protein_coding synonymous_variant LOW 72A>G Leu24Leu
M0025087 EMJEGDIJ_00003 2572 6 Skin 0.43 protein_coding synonymous_variant LOW 70T>C Leu24Leu
M0025088 EMJEGDIJ_00003 2574 6 Skin 0.43 protein_coding missense_variant MODERATE 68A>C Lys23Thr
M0025089 EMJEGDIJ_00003 2586 6 Skin 0.43 protein_coding missense_variant MODERATE 56C>A Thr19Lys
M0025090 EMJEGDIJ_00003 2600 3 Skin 0.21 protein_coding synonymous_variant LOW 42G>A Ala14Ala
M0025091 EMJEGDIJ_00003 2611 6 Skin 0.43 protein_coding synonymous_variant LOW 31T>C Leu11Leu
M0025092 EMJEGDIJ_00003 2661 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -20G>A None
M0025093 EMJEGDIJ_00003 2692 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -51A>G None
M0025094 EMJEGDIJ_00003 2696 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -55A>G None
M0025095 EMJEGDIJ_00003 2737 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -96G>A None
M0025096 EMJEGDIJ_00003 2747 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -106C>T None
M0025097 EMJEGDIJ_00003 2777 10 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -136T>A None
M0025098 EMJEGDIJ_00003 2811 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -170T>G None
M0025099 EMJEGDIJ_00005 3494 9 Skin 0.64 protein_coding synonymous_variant LOW 249T>C Arg83Arg
M0025100 EMJEGDIJ_00003 3579 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -938A>G None
M0025101 EMJEGDIJ_00003 3610 13 Skin 0.93 protein_coding upstream_gene_variant MODIFIER -969A>G None
M0025102 EMJEGDIJ_00003 3643 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1002C>A None
M0025103 EMJEGDIJ_00003 3801 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1160C>T None
M0025104 EMJEGDIJ_00003 3868 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1227G>A None
M0025105 EMJEGDIJ_00003 4002 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -1361A>G None
M0025106 EMJEGDIJ_00003 4180 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1539A>G None
M0025107 EMJEGDIJ_00003 4186 10 Skin 0.71 protein_coding upstream_gene_variant MODIFIER -1545T>C None
M0025108 EMJEGDIJ_00003 4305 6 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -1664A>C None
M0025109 EMJEGDIJ_00003 4676 9 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -2035T>G None
M0025110 EMJEGDIJ_00003 4729 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2088G>C None
M0025111 EMJEGDIJ_00003 3952 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -1311C>A None
M0025112 EMJEGDIJ_00006 5592 6 Skin 0.43 protein_coding missense_variant MODERATE 556A>C Ile186Leu
M0025113 EMJEGDIJ_00006 5597 6 Skin 0.43 protein_coding synonymous_variant LOW 561G>A Lys187Lys
M0025114 EMJEGDIJ_00006 5608 7 Skin 0.50 protein_coding missense_variant MODERATE 572G>T Gly191Val
M0025115 EMJEGDIJ_00006 5628 6 Skin 0.43 protein_coding missense_variant MODERATE 592G>A Ala198Thr
M0025116 EMJEGDIJ_00006 5637 6 Skin 0.43 protein_coding missense_variant MODERATE 601G>T Ala201Ser
M0025117 EMJEGDIJ_00006 5642 6 Skin 0.43 protein_coding synonymous_variant LOW 606C>T Arg202Arg
M0025118 EMJEGDIJ_00006 5678 6 Skin 0.43 protein_coding synonymous_variant LOW 642T>C Cys214Cys
M0025119 EMJEGDIJ_00006 5715 6 Skin 0.43 protein_coding missense_variant MODERATE 679T>A Leu227Met
M0025120 EMJEGDIJ_00006 5738 6 Skin 0.43 protein_coding synonymous_variant LOW 702C>T Ala234Ala
M0025121 EMJEGDIJ_00003 6083 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3442G>A None
M0025122 EMJEGDIJ_00003 6120 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3479C>A None
M0025123 EMJEGDIJ_00003 6143 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3502A>G None
M0025124 EMJEGDIJ_00003 6161 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3520A>G None
M0025125 EMJEGDIJ_00003 6178 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3537G>A None
M0025126 EMJEGDIJ_00003 6186 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3545G>A None
M0025127 EMJEGDIJ_00003 6224 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3583T>C None
M0025128 EMJEGDIJ_00003 6239 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3598A>G None
M0025129 EMJEGDIJ_00003 6267 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3626C>G None
M0025130 EMJEGDIJ_00003 6281 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3640T>C None
M0025131 EMJEGDIJ_00003 6295 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3654T>C None
M0025132 EMJEGDIJ_00003 6329 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3688A>G None
M0025133 EMJEGDIJ_00003 6340 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3699G>A None
M0025134 EMJEGDIJ_00003 6346 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3705C>T None
M0025135 EMJEGDIJ_00003 6372 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -3731T>C None
M0025136 EMJEGDIJ_00003 6378 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -3737G>A None
M0025137 EMJEGDIJ_00008 6403 4 Skin 0.29 protein_coding synonymous_variant LOW 9T>C Leu3Leu
M0025138 EMJEGDIJ_00008 6437 4 Skin 0.29 protein_coding synonymous_variant LOW 43C>T Leu15Leu
M0025139 EMJEGDIJ_00008 6481 3 Skin 0.21 protein_coding synonymous_variant LOW 87G>A Glu29Glu
M0025140 EMJEGDIJ_00008 6514 5 Skin 0.36 protein_coding synonymous_variant LOW 120C>T Asp40Asp
M0025141 EMJEGDIJ_00008 6655 6 Skin 0.43 protein_coding synonymous_variant LOW 261A>G Leu87Leu
M0025142 EMJEGDIJ_00008 6712 5 Skin 0.36 protein_coding synonymous_variant LOW 318G>A Leu106Leu
M0025143 EMJEGDIJ_00008 6733 6 Skin 0.43 protein_coding synonymous_variant LOW 339T>C Asp113Asp
M0025144 EMJEGDIJ_00008 6846 5 Skin 0.36 protein_coding missense_variant MODERATE 452A>G Lys151Arg
M0025145 EMJEGDIJ_00008 6853 4 Skin 0.29 protein_coding synonymous_variant LOW 459C>G Val153Val
M0025146 EMJEGDIJ_00008 6886 4 Skin 0.29 protein_coding synonymous_variant LOW 492A>G Pro164Pro
M0025147 EMJEGDIJ_00008 6910 6 Skin 0.43 protein_coding synonymous_variant LOW 516A>G Leu172Leu
M0025148 EMJEGDIJ_00004 1965 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -995C>T None
M0025149 EMJEGDIJ_00004 1967 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -993C>G None
M0025150 EMJEGDIJ_00004 2008 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -952T>C None
M0025151 EMJEGDIJ_00004 2034 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -926T>G None
M0025152 EMJEGDIJ_00004 2040 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -920C>T None
M0025153 EMJEGDIJ_00004 2077 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -883G>A None
M0025154 EMJEGDIJ_00004 2080 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -880C>T None
M0025155 EMJEGDIJ_00003 2115 3 Skin 0.21 protein_coding missense_variant MODERATE 527T>C Ile176Thr
M0025156 EMJEGDIJ_00003 2128 4 Skin 0.29 protein_coding missense_variant MODERATE 514A>G Thr172Ala
M0025157 EMJEGDIJ_00003 4897 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2256G>A None
M0025158 EMJEGDIJ_00003 4900 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2259G>A None
M0025159 EMJEGDIJ_00003 4920 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2279A>G None
M0025160 EMJEGDIJ_00003 4926 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2285A>G None
M0025161 EMJEGDIJ_00003 4957 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2316C>T None
M0025162 EMJEGDIJ_00006 5067 7 Skin 0.50 protein_coding missense_variant MODERATE 31A>G Ile11Val
M0025163 EMJEGDIJ_00006 5138 3 Skin 0.21 protein_coding missense_variant MODERATE 102A>G Ile34Met
M0025164 EMJEGDIJ_00006 5199 4 Skin 0.29 protein_coding synonymous_variant LOW 163C>T Leu55Leu
M0025165 EMJEGDIJ_00006 5258 4 Skin 0.29 protein_coding synonymous_variant LOW 222A>G Glu74Glu
M0025166 EMJEGDIJ_00006 5267 4 Skin 0.29 protein_coding synonymous_variant LOW 231G>A Ala77Ala
M0025167 EMJEGDIJ_00006 5280 4 Skin 0.29 protein_coding missense_variant MODERATE 244C>A Leu82Ile
M0025168 EMJEGDIJ_00006 5281 3 Skin 0.21 protein_coding missense_variant MODERATE 245T>C Leu82Pro
M0025169 EMJEGDIJ_00006 5285 4 Skin 0.29 protein_coding synonymous_variant LOW 249T>C Asn83Asn
M0025170 EMJEGDIJ_00006 5294 4 Skin 0.29 protein_coding synonymous_variant LOW 258C>T Gly86Gly
M0025171 EMJEGDIJ_00006 5303 4 Skin 0.29 protein_coding synonymous_variant LOW 267G>C Leu89Leu
M0025172 EMJEGDIJ_00006 5306 3 Skin 0.21 protein_coding missense_variant MODERATE 270G>T Glu90Asp
M0025173 EMJEGDIJ_00006 5314 4 Skin 0.29 protein_coding missense_variant MODERATE 278G>A Arg93Lys
M0025174 EMJEGDIJ_00006 5340 4 Skin 0.29 protein_coding missense_variant MODERATE 304G>A Val102Met
M0025175 EMJEGDIJ_00006 5342 4 Skin 0.29 protein_coding synonymous_variant LOW 306G>T Val102Val
M0025176 EMJEGDIJ_00006 5345 4 Skin 0.29 protein_coding synonymous_variant LOW 309C>T Ile103Ile
M0025177 EMJEGDIJ_00006 5355 4 Skin 0.29 protein_coding missense_variant MODERATE 319A>G Ile107Val
M0025178 EMJEGDIJ_00006 5360 4 Skin 0.29 protein_coding synonymous_variant LOW 324T>C Ala108Ala
M0025179 EMJEGDIJ_00006 5366 4 Skin 0.29 protein_coding synonymous_variant LOW 330T>G Leu110Leu
M0025180 EMJEGDIJ_00006 5420 4 Skin 0.29 protein_coding synonymous_variant LOW 384C>T Asn128Asn
M0025181 EMJEGDIJ_00006 5423 4 Skin 0.29 protein_coding synonymous_variant LOW 387C>T Gly129Gly
M0025182 EMJEGDIJ_00006 5436 4 Skin 0.29 protein_coding synonymous_variant LOW 400T>C Leu134Leu
M0025183 EMJEGDIJ_00006 5486 4 Skin 0.29 protein_coding synonymous_variant LOW 450C>T Val150Val
M0025184 EMJEGDIJ_00006 5501 4 Skin 0.29 protein_coding synonymous_variant LOW 465A>G Leu155Leu
M0025185 EMJEGDIJ_00006 5508 3 Skin 0.21 protein_coding missense_variant MODERATE 472A>G Thr158Ala
M0025186 EMJEGDIJ_00009 7334 5 Skin 0.36 protein_coding synonymous_variant LOW 297C>T Ala99Ala
M0025187 EMJEGDIJ_00009 7355 5 Skin 0.36 protein_coding synonymous_variant LOW 318C>T Cys106Cys
M0025188 EMJEGDIJ_00009 7379 5 Skin 0.36 protein_coding synonymous_variant LOW 342T>C Leu114Leu
M0025189 EMJEGDIJ_00005 3394 8 Skin 0.57 protein_coding missense_variant MODERATE 149T>C Val50Ala
M0025190 EMJEGDIJ_00005 3416 8 Skin 0.57 protein_coding synonymous_variant LOW 171T>C Ser57Ser
M0025191 EMJEGDIJ_00006 5849 3 Skin 0.21 protein_coding synonymous_variant LOW 813C>T Thr271Thr
M0025192 EMJEGDIJ_00006 5862 3 Skin 0.21 protein_coding missense_variant MODERATE 826G>T Ala276Ser
M0025193 EMJEGDIJ_00006 5871 3 Skin 0.21 protein_coding missense_variant MODERATE 835G>C Ala279Pro
M0025194 EMJEGDIJ_00006 5872 3 Skin 0.21 protein_coding missense_variant MODERATE 836C>T Ala279Val
M0025195 EMJEGDIJ_00003 5904 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3263A>G None
M0025196 EMJEGDIJ_00003 5921 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3280C>T None
M0025197 EMJEGDIJ_00003 5949 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3308T>G None
M0025198 EMJEGDIJ_00007 5976 3 Skin 0.21 protein_coding synonymous_variant LOW 12T>C Phe4Phe
M0025199 EMJEGDIJ_00007 5979 3 Skin 0.21 protein_coding synonymous_variant LOW 15G>A Thr5Thr
M0025200 EMJEGDIJ_00007 5981 3 Skin 0.21 protein_coding missense_variant MODERATE 17C>T Ala6Val
M0025201 EMJEGDIJ_00007 5982 3 Skin 0.21 protein_coding synonymous_variant LOW 18T>C Ala6Ala
M0025202 EMJEGDIJ_00007 6000 4 Skin 0.29 protein_coding synonymous_variant LOW 36T>G Ser12Ser
M0025203 EMJEGDIJ_00007 6010 3 Skin 0.21 protein_coding missense_variant MODERATE 46G>T Ala16Ser
M0025204 EMJEGDIJ_00007 6014 3 Skin 0.21 protein_coding missense_variant MODERATE 50T>A Val17Glu
M0025205 EMJEGDIJ_00007 6022 3 Skin 0.21 protein_coding missense_variant MODERATE 58A>G Thr20Ala
M0025206 EMJEGDIJ_00007 6024 3 Skin 0.21 protein_coding synonymous_variant LOW 60G>A Thr20Thr
M0025207 EMJEGDIJ_00007 6029 4 Skin 0.29 protein_coding missense_variant MODERATE 65T>C Leu22Ser
M0025208 EMJEGDIJ_00007 6046 4 Skin 0.29 protein_coding missense_variant MODERATE 82T>C Ser28Pro
M0025209 EMJEGDIJ_00008 6956 4 Skin 0.29 protein_coding missense_variant MODERATE 562G>A Ala188Thr
M0025210 EMJEGDIJ_00009 7070 4 Skin 0.29 protein_coding synonymous_variant LOW 33C>T Leu11Leu
M0025211 EMJEGDIJ_00009 7139 3 Skin 0.21 protein_coding synonymous_variant LOW 102A>G Thr34Thr
M0025212 EMJEGDIJ_00009 7148 4 Skin 0.29 protein_coding synonymous_variant LOW 111T>C Val37Val
M0025213 EMJEGDIJ_00009 7154 4 Skin 0.29 protein_coding synonymous_variant LOW 117T>C His39His
M0025214 EMJEGDIJ_00009 7160 3 Skin 0.21 protein_coding synonymous_variant LOW 123C>T Ser41Ser
M0025215 EMJEGDIJ_00009 7172 3 Skin 0.21 protein_coding synonymous_variant LOW 135T>C Asp45Asp
M0025216 EMJEGDIJ_00009 7283 4 Skin 0.29 protein_coding synonymous_variant LOW 246T>C Ile82Ile
M0025217 EMJEGDIJ_00009 7292 4 Skin 0.29 protein_coding synonymous_variant LOW 255G>T Thr85Thr
M0025218 EMJEGDIJ_00009 7299 4 Skin 0.29 protein_coding missense_variant MODERATE 262T>A Ser88Thr
M0025219 EMJEGDIJ_00009 7311 4 Skin 0.29 protein_coding missense_variant MODERATE 274G>A Asp92Asn
M0025220 EMJEGDIJ_00009 7415 4 Skin 0.29 protein_coding synonymous_variant LOW 378C>T Val126Val
M0025221 EMJEGDIJ_00009 7416 4 Skin 0.29 protein_coding missense_variant MODERATE 379G>T Ala127Ser
M0025222 EMJEGDIJ_00009 7420 4 Skin 0.29 protein_coding missense_variant MODERATE 383A>G Gln128Arg
M0025223 EMJEGDIJ_00009 7433 4 Skin 0.29 protein_coding synonymous_variant LOW 396A>C Gly132Gly
M0025224 EMJEGDIJ_00009 7454 4 Skin 0.29 protein_coding synonymous_variant LOW 417C>T Asp139Asp
M0025225 EMJEGDIJ_00009 7455 4 Skin 0.29 protein_coding synonymous_variant LOW 418C>T Leu140Leu
M0025226 EMJEGDIJ_00009 7460 4 Skin 0.29 protein_coding synonymous_variant LOW 423G>C Thr141Thr
M0025227 EMJEGDIJ_00009 7469 4 Skin 0.29 protein_coding synonymous_variant LOW 432T>C Pro144Pro
M0025228 EMJEGDIJ_00009 7490 4 Skin 0.29 protein_coding synonymous_variant LOW 453G>A Leu151Leu
M0025229 EMJEGDIJ_00009 7568 4 Skin 0.29 protein_coding synonymous_variant LOW 531C>T Phe177Phe
M0025230 EMJEGDIJ_00009 7592 4 Skin 0.29 protein_coding synonymous_variant LOW 555A>G Glu185Glu
M0025231 EMJEGDIJ_00009 7611 4 Skin 0.29 protein_coding missense_variant MODERATE 574G>A Val192Ile
M0025232 EMJEGDIJ_00009 7647 4 Skin 0.29 protein_coding synonymous_variant LOW 610C>A Arg204Arg
M0025233 EMJEGDIJ_00004 7755 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4511C>T None
M0025234 EMJEGDIJ_00004 7778 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4534C>T None
M0025235 EMJEGDIJ_00004 7816 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4572C>T None
M0025236 EMJEGDIJ_00004 7856 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4612G>A None
M0025237 EMJEGDIJ_00004 7860 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4616C>T None
M0025238 EMJEGDIJ_00004 7908 3 Skin 0.21 protein_coding downstream_gene_variant MODIFIER *4664G>T None
M0025239 EMJEGDIJ_00010 7958 3 Skin 0.21 protein_coding synonymous_variant LOW 270T>C Asp90Asp
M0025240 EMJEGDIJ_00003 2511 3 Skin 0.21 protein_coding missense_variant MODERATE 131G>A Gly44Asp
M0025241 EMJEGDIJ_00003 2857 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -216C>T None
M0025242 EMJEGDIJ_00003 2862 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -221C>T None
M0025243 EMJEGDIJ_00003 2868 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -227A>G None
M0025244 EMJEGDIJ_00003 2909 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -268G>T None
M0025245 EMJEGDIJ_00003 2932 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -291C>T None
M0025246 EMJEGDIJ_00004 3003 5 Skin 0.36 protein_coding missense_variant MODERATE 44G>A Gly15Asp
M0025247 EMJEGDIJ_00004 3048 5 Skin 0.36 protein_coding missense_variant MODERATE 89A>G Asp30Gly
M0025248 EMJEGDIJ_00004 3099 5 Skin 0.36 protein_coding missense_variant MODERATE 140T>C Ile47Thr
M0025249 EMJEGDIJ_00004 3100 5 Skin 0.36 protein_coding synonymous_variant LOW 141C>T Ile47Ile
M0025250 EMJEGDIJ_00004 3130 5 Skin 0.36 protein_coding synonymous_variant LOW 171T>G Gly57Gly
M0025251 EMJEGDIJ_00005 3355 5 Skin 0.36 protein_coding missense_variant MODERATE 110T>C Val37Ala
M0025252 EMJEGDIJ_00005 3389 5 Skin 0.36 protein_coding synonymous_variant LOW 144C>T Arg48Arg
M0025253 EMJEGDIJ_00005 3540 3 Skin 0.21 protein_coding missense_variant MODERATE 295G>A Ala99Thr
M0025254 EMJEGDIJ_00003 4553 5 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1912C>T None
M0025255 EMJEGDIJ_00003 4794 7 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2153T>C None
M0025256 EMJEGDIJ_00003 4804 4 Skin 0.29 protein_coding upstream_gene_variant MODIFIER -2163G>A None
M0025257 EMJEGDIJ_00003 4835 3 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2194G>T None
M0025258 EMJEGDIJ_00003 2285 3 Skin 0.21 protein_coding synonymous_variant LOW 357A>G Ala119Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term