Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2113
  Reference Plasmid   1111525849742984_bin.17__k141_682585
  Reference Plasmid Size   11626
  Reference Plasmid GC Content   0.57
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0025332 ILBJBCPA_00003 2525 3 Skin 0.43 protein_coding synonymous_variant LOW 69C>G Ala23Ala
M0025333 ILBJBCPA_00004 3318 3 Skin 0.43 protein_coding missense_variant MODERATE 25G>C Val9Leu
M0025334 ILBJBCPA_00004 3327 3 Skin 0.43 protein_coding missense_variant MODERATE 34A>G Thr12Ala
M0025335 ILBJBCPA_00005 4774 5 Skin 0.71 protein_coding synonymous_variant LOW 72C>T Asn24Asn
M0025336 ILBJBCPA_00005 5782 3 Skin 0.43 protein_coding synonymous_variant LOW 1080C>T Ser360Ser
M0025337 ILBJBCPA_00006 6776 3 Skin 0.43 protein_coding missense_variant MODERATE 880G>A Gly294Ser
M0025338 ILBJBCPA_00002 1660 3 Skin 0.43 protein_coding synonymous_variant LOW 135G>A Ser45Ser
M0025339 ILBJBCPA_00002 1675 3 Skin 0.43 protein_coding missense_variant MODERATE 150T>G Asn50Lys
M0025340 ILBJBCPA_00003 2810 4 Skin 0.57 protein_coding synonymous_variant LOW 354T>C Val118Val
M0025341 ILBJBCPA_00004 3546 4 Skin 0.57 protein_coding synonymous_variant LOW 253C>T Leu85Leu
M0025342 ILBJBCPA_00004 3563 4 Skin 0.57 protein_coding synonymous_variant LOW 270C>G Val90Val
M0025343 ILBJBCPA_00004 3587 4 Skin 0.57 protein_coding synonymous_variant LOW 294G>A Glu98Glu
M0025344 ILBJBCPA_00004 3600 4 Skin 0.57 protein_coding synonymous_variant LOW 307C>T Leu103Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term