Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2138
  Reference Plasmid   1111525849743258_bin.2__k141_11562
  Reference Plasmid Size   76031
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0027302 NGABOFJI_00022 21212 3 Skin 0.03 protein_coding synonymous_variant LOW 537C>G Pro179Pro
M0027303 NGABOFJI_00022 21671 5 Skin 0.04 protein_coding synonymous_variant LOW 78T>C Ile26Ile
M0027304 NGABOFJI_00020 21802 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4404G>T None
M0027305 NGABOFJI_00031 28687 4 Skin 0.03 protein_coding missense_variant MODERATE 1366C>G Arg456Gly
M0027306 NGABOFJI_00044 39202 13 Skin 0.11 protein_coding synonymous_variant LOW 1947G>C Arg649Arg
M0027307 NGABOFJI_00048 41019 10 Skin 0.09 protein_coding upstream_gene_variant MODIFIER -1042A>G None
M0027308 NGABOFJI_00049 43821 10 Skin 0.09 protein_coding synonymous_variant LOW 519A>G Lys173Lys
M0027309 NGABOFJI_00051 48833 3 Skin 0.03 protein_coding missense_variant MODERATE 77T>A Ile26Asn
M0027310 NGABOFJI_00051 48840 3 Skin 0.03 protein_coding missense_variant MODERATE 70C>T Leu24Phe
M0027311 NGABOFJI_00056 52565 3 Skin 0.03 protein_coding synonymous_variant LOW 906A>G Leu302Leu
M0027312 NGABOFJI_00052 49437 3 Skin 0.03 protein_coding synonymous_variant LOW 525T>C Asp175Asp
M0027313 NGABOFJI_00052 49455 3 Skin 0.03 protein_coding synonymous_variant LOW 507T>G Ser169Ser
M0027314 NGABOFJI_00037 32314 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -2C>A None
M0027315 NGABOFJI_00070 65099 7 Skin 0.06 protein_coding synonymous_variant LOW 72A>T Ile24Ile
M0027316 NGABOFJI_00071 65715 7 Skin 0.06 protein_coding missense_variant MODERATE 439T>G Cys147Gly
M0027317 NGABOFJI_00007 6215 5 Skin 0.04 protein_coding missense_variant MODERATE 1131C>A Phe377Leu
M0027318 NGABOFJI_00009 8096 3 Skin 0.03 protein_coding synonymous_variant LOW 942T>C Ile314Ile
M0027319 NGABOFJI_00010 9568 4 Skin 0.03 protein_coding synonymous_variant LOW 303C>G Ala101Ala
M0027320 NGABOFJI_00010 9625 3 Skin 0.03 protein_coding synonymous_variant LOW 246T>C Phe82Phe
M0027321 NGABOFJI_00010 9648 3 Skin 0.03 protein_coding synonymous_variant LOW 223C>T Leu75Leu
M0027322 NGABOFJI_00010 9667 3 Skin 0.03 protein_coding synonymous_variant LOW 204G>C Ala68Ala
M0027323 NGABOFJI_00010 9673 3 Skin 0.03 protein_coding synonymous_variant LOW 198G>T Val66Val
M0027324 NGABOFJI_00010 9940 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -70A>G None
M0027325 NGABOFJI_00010 9941 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -71G>A None
M0027326 NGABOFJI_00011 10334 3 Skin 0.03 protein_coding missense_variant MODERATE 392G>C Gly131Ala
M0027327 NGABOFJI_00012 10451 4 Skin 0.03 protein_coding synonymous_variant LOW 63C>T Phe21Phe
M0027328 NGABOFJI_00012 10934 3 Skin 0.03 protein_coding synonymous_variant LOW 546C>A Arg182Arg
M0027329 NGABOFJI_00012 10960 3 Skin 0.03 protein_coding missense_variant MODERATE 572C>T Ala191Val
M0027330 NGABOFJI_00013 11015 3 Skin 0.03 protein_coding missense_variant MODERATE 49T>G Tyr17Asp
M0027331 NGABOFJI_00013 11026 3 Skin 0.03 protein_coding synonymous_variant LOW 60A>C Ala20Ala
M0027332 NGABOFJI_00013 11044 3 Skin 0.03 protein_coding synonymous_variant LOW 78C>G Pro26Pro
M0027333 NGABOFJI_00013 11290 3 Skin 0.03 protein_coding synonymous_variant LOW 324A>C Thr108Thr
M0027334 NGABOFJI_00013 11326 3 Skin 0.03 protein_coding synonymous_variant LOW 360A>C Pro120Pro
M0027335 NGABOFJI_00013 11335 3 Skin 0.03 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0027336 NGABOFJI_00013 11439 3 Skin 0.03 protein_coding missense_variant MODERATE 473T>C Leu158Pro
M0027337 NGABOFJI_00013 11480 3 Skin 0.03 protein_coding missense_variant MODERATE 514T>A Ser172Thr
M0027338 NGABOFJI_00013 11508 3 Skin 0.03 protein_coding missense_variant MODERATE 542G>C Gly181Ala
M0027339 NGABOFJI_00013 11512 3 Skin 0.03 protein_coding synonymous_variant LOW 546T>C Asp182Asp
M0027340 NGABOFJI_00013 11513 3 Skin 0.03 protein_coding synonymous_variant LOW 547T>C Leu183Leu
M0027341 NGABOFJI_00013 11743 5 Skin 0.04 protein_coding missense_variant MODERATE 777C>G Asp259Glu
M0027342 NGABOFJI_00010 9891 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -21C>T None
M0027343 NGABOFJI_00010 9900 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -30G>A None
M0027344 NGABOFJI_00010 9906 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -36C>A None
M0027345 NGABOFJI_00012 10424 3 Skin 0.03 protein_coding synonymous_variant LOW 36T>C Asp12Asp
M0027346 NGABOFJI_00012 10530 3 Skin 0.03 protein_coding missense_variant MODERATE 142A>G Ile48Val
M0027347 NGABOFJI_00035 31279 5 Skin 0.04 protein_coding synonymous_variant LOW 78G>C Thr26Thr
M0027348 NGABOFJI_00035 31348 5 Skin 0.04 protein_coding synonymous_variant LOW 147C>G Ala49Ala
M0027349 NGABOFJI_00036 31481 3 Skin 0.03 protein_coding missense_variant MODERATE 22C>A Leu8Met
M0027350 NGABOFJI_00037 32492 5 Skin 0.04 protein_coding synonymous_variant LOW 177A>C Leu59Leu
M0027351 NGABOFJI_00037 32834 4 Skin 0.03 protein_coding synonymous_variant LOW 519G>C Pro173Pro
M0027352 NGABOFJI_00037 32856 3 Skin 0.03 protein_coding synonymous_variant LOW 541C>A Arg181Arg
M0027353 NGABOFJI_00037 32894 4 Skin 0.03 protein_coding synonymous_variant LOW 579C>A Gly193Gly
M0027354 NGABOFJI_00037 33062 4 Skin 0.03 protein_coding synonymous_variant LOW 747G>C Gly249Gly
M0027355 NGABOFJI_00037 33071 4 Skin 0.03 protein_coding synonymous_variant LOW 756A>G Pro252Pro
M0027356 NGABOFJI_00037 33247 4 Skin 0.03 protein_coding missense_variant MODERATE 932T>C Val311Ala
M0027357 NGABOFJI_00038 34204 3 Skin 0.03 protein_coding synonymous_variant LOW 273T>G Pro91Pro
M0027358 NGABOFJI_00038 34288 3 Skin 0.03 protein_coding synonymous_variant LOW 189T>C Gly63Gly
M0027359 NGABOFJI_00038 34311 3 Skin 0.03 protein_coding missense_variant MODERATE 166G>T Ala56Ser
M0027360 NGABOFJI_00038 34533 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -57C>G None
M0027361 NGABOFJI_00041 35902 4 Skin 0.03 protein_coding synonymous_variant LOW 603C>T Asp201Asp
M0027362 NGABOFJI_00042 36372 3 Skin 0.03 protein_coding synonymous_variant LOW 129G>C Thr43Thr
M0027363 NGABOFJI_00043 37079 4 Skin 0.03 protein_coding synonymous_variant LOW 423A>G Gly141Gly
M0027364 NGABOFJI_00043 37142 3 Skin 0.03 protein_coding synonymous_variant LOW 486C>G Arg162Arg
M0027365 NGABOFJI_00037 32369 3 Skin 0.03 protein_coding synonymous_variant LOW 54A>G Lys18Lys
M0027366 NGABOFJI_00038 34419 6 Skin 0.05 protein_coding missense_variant MODERATE 58C>A His20Asn
M0027367 NGABOFJI_00038 34420 5 Skin 0.04 protein_coding synonymous_variant LOW 57C>A Pro19Pro
M0027368 NGABOFJI_00021 18731 4 Skin 0.03 protein_coding synonymous_variant LOW 1887C>T Leu629Leu
M0027369 NGABOFJI_00021 19673 3 Skin 0.03 protein_coding synonymous_variant LOW 945C>T Ala315Ala
M0027370 NGABOFJI_00021 19745 3 Skin 0.03 protein_coding synonymous_variant LOW 873T>C Phe291Phe
M0027371 NGABOFJI_00021 19750 3 Skin 0.03 protein_coding synonymous_variant LOW 868T>C Leu290Leu
M0027372 NGABOFJI_00021 19880 4 Skin 0.03 protein_coding synonymous_variant LOW 738T>C Asn246Asn
M0027373 NGABOFJI_00021 20519 3 Skin 0.03 protein_coding synonymous_variant LOW 99G>C Pro33Pro
M0027374 NGABOFJI_00022 20906 3 Skin 0.03 protein_coding synonymous_variant LOW 843C>A Gly281Gly
M0027375 NGABOFJI_00022 21370 4 Skin 0.03 protein_coding missense_variant MODERATE 379G>T Ala127Ser
M0027376 NGABOFJI_00022 21394 3 Skin 0.03 protein_coding missense_variant MODERATE 355A>G Lys119Glu
M0027377 NGABOFJI_00022 21434 4 Skin 0.03 protein_coding synonymous_variant LOW 315T>C Ile105Ile
M0027378 NGABOFJI_00022 21446 3 Skin 0.03 protein_coding synonymous_variant LOW 303C>T Cys101Cys
M0027379 NGABOFJI_00022 21464 4 Skin 0.03 protein_coding synonymous_variant LOW 285C>G Arg95Arg
M0027380 NGABOFJI_00023 22181 5 Skin 0.04 protein_coding missense_variant MODERATE 94G>A Ala32Thr
M0027381 NGABOFJI_00025 23487 3 Skin 0.03 protein_coding synonymous_variant LOW 99C>G Ala33Ala
M0027382 NGABOFJI_00052 49212 3 Skin 0.03 protein_coding synonymous_variant LOW 750C>T Thr250Thr
M0027383 NGABOFJI_00052 49213 3 Skin 0.03 protein_coding missense_variant MODERATE 749C>A Thr250Asn
M0027384 NGABOFJI_00052 49229 3 Skin 0.03 protein_coding missense_variant MODERATE 733A>C Thr245Pro
M0027385 NGABOFJI_00015 13325 27 Skin 0.23 protein_coding synonymous_variant LOW 654C>G Ala218Ala
M0027386 NGABOFJI_00016 13812 3 Skin 0.03 protein_coding synonymous_variant LOW 294G>C Pro98Pro
M0027387 NGABOFJI_00021 18227 4 Skin 0.03 protein_coding synonymous_variant LOW 2391A>G Gln797Gln
M0027388 NGABOFJI_00021 18269 4 Skin 0.03 protein_coding synonymous_variant LOW 2349G>C Pro783Pro
M0027389 NGABOFJI_00021 19064 5 Skin 0.04 protein_coding synonymous_variant LOW 1554T>C Asp518Asp
M0027390 NGABOFJI_00021 19094 3 Skin 0.03 protein_coding synonymous_variant LOW 1524C>T His508His
M0027391 NGABOFJI_00020 22038 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -4640A>T None
M0027392 NGABOFJI_00023 22798 3 Skin 0.03 protein_coding synonymous_variant LOW 711A>G Ala237Ala
M0027393 NGABOFJI_00023 22822 3 Skin 0.03 protein_coding synonymous_variant LOW 735A>C Pro245Pro
M0027394 NGABOFJI_00021 24419 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3802C>G None
M0027395 NGABOFJI_00027 24747 4 Skin 0.03 protein_coding synonymous_variant LOW 33T>C Ala11Ala
M0027396 NGABOFJI_00028 25295 3 Skin 0.03 protein_coding synonymous_variant LOW 207G>C Val69Val
M0027397 NGABOFJI_00028 25334 4 Skin 0.03 protein_coding synonymous_variant LOW 246T>C Asp82Asp
M0027398 NGABOFJI_00028 25424 3 Skin 0.03 protein_coding synonymous_variant LOW 336C>G Ala112Ala
M0027399 NGABOFJI_00028 25505 3 Skin 0.03 protein_coding synonymous_variant LOW 417T>C Val139Val
M0027400 NGABOFJI_00028 25556 3 Skin 0.03 protein_coding synonymous_variant LOW 468G>A Ala156Ala
M0027401 NGABOFJI_00028 25607 4 Skin 0.03 protein_coding synonymous_variant LOW 519C>G Thr173Thr
M0027402 NGABOFJI_00009 7493 3 Skin 0.03 protein_coding synonymous_variant LOW 339G>A Ala113Ala
M0027403 NGABOFJI_00015 13499 3 Skin 0.03 protein_coding synonymous_variant LOW 828T>G Ala276Ala
M0027404 NGABOFJI_00015 13502 3 Skin 0.03 protein_coding synonymous_variant LOW 831G>A Thr277Thr
M0027405 NGABOFJI_00019 15714 3 Skin 0.03 protein_coding synonymous_variant LOW 117G>A Ala39Ala
M0027406 NGABOFJI_00021 19157 5 Skin 0.04 protein_coding synonymous_variant LOW 1461G>C Ala487Ala
M0027407 NGABOFJI_00021 19160 4 Skin 0.03 protein_coding synonymous_variant LOW 1458C>T Gly486Gly
M0027408 NGABOFJI_00020 21891 4 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4493C>T None
M0027409 NGABOFJI_00028 25232 3 Skin 0.03 protein_coding synonymous_variant LOW 144C>G Ala48Ala
M0027410 NGABOFJI_00028 25271 3 Skin 0.03 protein_coding synonymous_variant LOW 183C>G Gly61Gly
M0027411 NGABOFJI_00022 21578 3 Skin 0.03 protein_coding synonymous_variant LOW 171G>A Glu57Glu
M0027412 NGABOFJI_00010 9211 14 Skin 0.12 protein_coding synonymous_variant LOW 660G>A Ser220Ser
M0027413 NGABOFJI_00037 33155 3 Skin 0.03 protein_coding synonymous_variant LOW 840T>C Pro280Pro
M0027414 NGABOFJI_00061 56859 3 Skin 0.03 protein_coding missense_variant MODERATE 32T>C Val11Ala
M0027415 NGABOFJI_00004 2852 3 Skin 0.03 protein_coding missense_variant MODERATE 524G>A Ser175Asn
M0027416 NGABOFJI_00038 35008 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -532T>A None
M0027417 NGABOFJI_00038 35009 5 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -533C>T None
M0027418 NGABOFJI_00040 35020 5 Skin 0.04 protein_coding missense_variant MODERATE 7A>C Asn3His
M0027419 NGABOFJI_00040 35022 5 Skin 0.04 protein_coding missense_variant MODERATE 9C>G Asn3Lys
M0027420 NGABOFJI_00040 35024 5 Skin 0.04 protein_coding missense_variant MODERATE 11A>C Asn4Thr
M0027421 NGABOFJI_00033 30493 3 Skin 0.03 protein_coding synonymous_variant LOW 1269C>G Gly423Gly
M0027422 NGABOFJI_00036 31543 3 Skin 0.03 protein_coding synonymous_variant LOW 84T>C Ile28Ile
M0027423 NGABOFJI_00038 33589 3 Skin 0.03 protein_coding synonymous_variant LOW 888T>C His296His
M0027424 NGABOFJI_00021 24622 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -4005A>G None
M0027425 NGABOFJI_00029 25912 3 Skin 0.03 protein_coding synonymous_variant LOW 12C>G Thr4Thr
M0027426 NGABOFJI_00034 31067 4 Skin 0.03 protein_coding synonymous_variant LOW 519T>C Ile173Ile
M0027427 NGABOFJI_00038 34030 3 Skin 0.03 protein_coding synonymous_variant LOW 447T>C Gly149Gly
M0027428 NGABOFJI_00021 18089 3 Skin 0.03 protein_coding synonymous_variant LOW 2529G>A Arg843Arg
M0027429 NGABOFJI_00015 13093 3 Skin 0.03 protein_coding missense_variant MODERATE 422A>G Glu141Gly
M0027430 NGABOFJI_00023 22528 3 Skin 0.03 protein_coding synonymous_variant LOW 441C>G Leu147Leu
M0027431 NGABOFJI_00018 15552 3 Skin 0.03 protein_coding missense_variant MODERATE 572G>A Arg191Gln






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term