Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2205
  Reference Plasmid   1111525849748616_bin.21__k141_319959
  Reference Plasmid Size   22162
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0029740 GAGHJKHE_00012 14199 3 Skin 0.30 protein_coding synonymous_variant LOW 78C>G Pro26Pro
M0029741 GAGHJKHE_00014 18261 3 Skin 0.30 protein_coding synonymous_variant LOW 24G>C Ala8Ala
M0029742 GAGHJKHE_00014 18272 3 Skin 0.30 protein_coding missense_variant MODERATE 13C>G Gln5Glu
M0029743 GAGHJKHE_00014 18277 3 Skin 0.30 protein_coding missense_variant MODERATE 8A>T Gln3Leu
M0029744 GAGHJKHE_00014 18279 3 Skin 0.30 protein_coding synonymous_variant LOW 6T>C Thr2Thr
M0029745 GAGHJKHE_00014 18280 3 Skin 0.30 protein_coding missense_variant MODERATE 5C>G Thr2Ser
M0029746 GAGHJKHE_00012 18288 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4012C>A None
M0029747 GAGHJKHE_00012 18303 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4027C>A None
M0029748 GAGHJKHE_00012 18333 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4057G>A None
M0029749 GAGHJKHE_00012 18361 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4085T>C None
M0029750 GAGHJKHE_00012 18380 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4104C>T None
M0029751 GAGHJKHE_00012 18386 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4110C>T None
M0029752 GAGHJKHE_00012 18434 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -4158T>C None
M0029753 GAGHJKHE_00015 18525 3 Skin 0.30 protein_coding missense_variant MODERATE 84C>G Ile28Met
M0029754 GAGHJKHE_00015 18639 3 Skin 0.30 protein_coding synonymous_variant LOW 198G>A Lys66Lys
M0029755 GAGHJKHE_00015 18646 3 Skin 0.30 protein_coding missense_variant MODERATE 205T>C Phe69Leu
M0029756 GAGHJKHE_00015 18654 3 Skin 0.30 protein_coding synonymous_variant LOW 213C>T His71His
M0029757 GAGHJKHE_00015 18681 3 Skin 0.30 protein_coding synonymous_variant LOW 240C>T Thr80Thr
M0029758 GAGHJKHE_00015 18816 3 Skin 0.30 protein_coding synonymous_variant LOW 375G>A Arg125Arg
M0029759 GAGHJKHE_00015 18825 3 Skin 0.30 protein_coding synonymous_variant LOW 384C>G Leu128Leu
M0029760 GAGHJKHE_00015 18861 3 Skin 0.30 protein_coding synonymous_variant LOW 420A>G Gly140Gly
M0029761 GAGHJKHE_00015 18885 3 Skin 0.30 protein_coding synonymous_variant LOW 444A>G Glu148Glu
M0029762 GAGHJKHE_00015 18886 3 Skin 0.30 protein_coding missense_variant MODERATE 445G>A Val149Ile
M0029763 GAGHJKHE_00016 19045 3 Skin 0.30 protein_coding synonymous_variant LOW 588A>C Arg196Arg
M0029764 GAGHJKHE_00016 19182 3 Skin 0.30 protein_coding missense_variant MODERATE 451T>G Ser151Ala
M0029765 GAGHJKHE_00016 19267 3 Skin 0.30 protein_coding synonymous_variant LOW 366C>A Ser122Ser
M0029766 GAGHJKHE_00016 19340 3 Skin 0.30 protein_coding missense_variant MODERATE 293T>A Leu98Gln
M0029767 GAGHJKHE_00016 19456 3 Skin 0.30 protein_coding synonymous_variant LOW 177G>C Leu59Leu
M0029768 GAGHJKHE_00016 19516 3 Skin 0.30 protein_coding synonymous_variant LOW 117T>C Tyr39Tyr
M0029769 GAGHJKHE_00017 19795 3 Skin 0.30 protein_coding synonymous_variant LOW 69C>T Ile23Ile
M0029770 GAGHJKHE_00017 19915 3 Skin 0.30 protein_coding synonymous_variant LOW 189C>T Val63Val
M0029771 GAGHJKHE_00017 19988 3 Skin 0.30 protein_coding missense_variant MODERATE 262C>A Leu88Met
M0029772 GAGHJKHE_00017 20011 3 Skin 0.30 protein_coding synonymous_variant LOW 285T>C His95His
M0029773 GAGHJKHE_00017 20071 3 Skin 0.30 protein_coding synonymous_variant LOW 345C>T Ala115Ala
M0029774 GAGHJKHE_00017 20323 3 Skin 0.30 protein_coding synonymous_variant LOW 597T>C Phe199Phe
M0029775 GAGHJKHE_00017 20425 3 Skin 0.30 protein_coding synonymous_variant LOW 699C>A Ala233Ala
M0029776 GAGHJKHE_00017 20437 3 Skin 0.30 protein_coding synonymous_variant LOW 711C>T Ile237Ile
M0029777 GAGHJKHE_00017 20446 3 Skin 0.30 protein_coding synonymous_variant LOW 720G>T Ser240Ser
M0029778 GAGHJKHE_00017 20500 3 Skin 0.30 protein_coding synonymous_variant LOW 774C>T His258His
M0029779 GAGHJKHE_00017 20528 3 Skin 0.30 protein_coding missense_variant MODERATE 802G>C Val268Leu
M0029780 GAGHJKHE_00017 20551 3 Skin 0.30 protein_coding synonymous_variant LOW 825C>A Arg275Arg
M0029781 GAGHJKHE_00017 20575 3 Skin 0.30 protein_coding synonymous_variant LOW 849C>G Ala283Ala
M0029782 GAGHJKHE_00017 20596 3 Skin 0.30 protein_coding synonymous_variant LOW 870G>C Thr290Thr
M0029783 GAGHJKHE_00017 20599 3 Skin 0.30 protein_coding synonymous_variant LOW 873T>C Asn291Asn
M0029784 GAGHJKHE_00017 20653 3 Skin 0.30 protein_coding synonymous_variant LOW 927C>G Ala309Ala
M0029785 GAGHJKHE_00017 20659 3 Skin 0.30 protein_coding synonymous_variant LOW 933G>A Glu311Glu
M0029786 GAGHJKHE_00017 20695 3 Skin 0.30 protein_coding synonymous_variant LOW 969C>G Ala323Ala
M0029787 GAGHJKHE_00017 20758 3 Skin 0.30 protein_coding synonymous_variant LOW 1032C>T Pro344Pro
M0029788 GAGHJKHE_00017 20803 3 Skin 0.30 protein_coding synonymous_variant LOW 1077G>A Gly359Gly
M0029789 GAGHJKHE_00017 20804 3 Skin 0.30 protein_coding synonymous_variant LOW 1078C>T Leu360Leu
M0029790 GAGHJKHE_00017 20815 3 Skin 0.30 protein_coding synonymous_variant LOW 1089T>C Cys363Cys
M0029791 GAGHJKHE_00017 20868 3 Skin 0.30 protein_coding missense_variant MODERATE 1142T>C Val381Ala
M0029792 GAGHJKHE_00017 20869 3 Skin 0.30 protein_coding synonymous_variant LOW 1143C>G Val381Val
M0029793 GAGHJKHE_00017 20905 3 Skin 0.30 protein_coding synonymous_variant LOW 1179G>C Ala393Ala
M0029794 GAGHJKHE_00017 20908 3 Skin 0.30 protein_coding synonymous_variant LOW 1182C>T Gly394Gly
M0029795 GAGHJKHE_00017 20923 3 Skin 0.30 protein_coding synonymous_variant LOW 1197A>G Glu399Glu
M0029796 GAGHJKHE_00017 20932 3 Skin 0.30 protein_coding synonymous_variant LOW 1206T>G Arg402Arg
M0029797 GAGHJKHE_00017 20956 3 Skin 0.30 protein_coding synonymous_variant LOW 1230C>G Ala410Ala
M0029798 GAGHJKHE_00017 20965 3 Skin 0.30 protein_coding synonymous_variant LOW 1239G>C Val413Val
M0029799 GAGHJKHE_00008 9347 5 Skin 0.50 protein_coding synonymous_variant LOW 291G>A Glu97Glu
M0029800 GAGHJKHE_00008 9359 5 Skin 0.50 protein_coding synonymous_variant LOW 279C>G Arg93Arg
M0029801 GAGHJKHE_00008 9364 5 Skin 0.50 protein_coding synonymous_variant LOW 274C>T Leu92Leu
M0029802 GAGHJKHE_00008 9488 5 Skin 0.50 protein_coding synonymous_variant LOW 150C>G Leu50Leu
M0029803 GAGHJKHE_00008 9491 5 Skin 0.50 protein_coding synonymous_variant LOW 147C>G Gly49Gly
M0029804 GAGHJKHE_00008 9555 5 Skin 0.50 protein_coding missense_variant MODERATE 83A>G Lys28Arg
M0029805 GAGHJKHE_00009 9670 4 Skin 0.40 protein_coding synonymous_variant LOW 1188A>G Glu396Glu
M0029806 GAGHJKHE_00009 9712 4 Skin 0.40 protein_coding synonymous_variant LOW 1146T>C Asp382Asp
M0029807 GAGHJKHE_00009 9715 4 Skin 0.40 protein_coding synonymous_variant LOW 1143C>T Tyr381Tyr
M0029808 GAGHJKHE_00009 9814 4 Skin 0.40 protein_coding synonymous_variant LOW 1044C>G Leu348Leu
M0029809 GAGHJKHE_00009 9958 4 Skin 0.40 protein_coding synonymous_variant LOW 900C>A Gly300Gly
M0029810 GAGHJKHE_00009 9988 4 Skin 0.40 protein_coding synonymous_variant LOW 870A>G Glu290Glu
M0029811 GAGHJKHE_00009 10111 4 Skin 0.40 protein_coding synonymous_variant LOW 747G>C Val249Val
M0029812 GAGHJKHE_00009 10132 4 Skin 0.40 protein_coding synonymous_variant LOW 726G>C Leu242Leu
M0029813 GAGHJKHE_00009 10201 4 Skin 0.40 protein_coding synonymous_variant LOW 657T>G Pro219Pro
M0029814 GAGHJKHE_00009 10243 4 Skin 0.40 protein_coding synonymous_variant LOW 615T>C Ile205Ile
M0029815 GAGHJKHE_00009 10453 4 Skin 0.40 protein_coding synonymous_variant LOW 405C>A Ala135Ala
M0029816 GAGHJKHE_00009 10474 4 Skin 0.40 protein_coding synonymous_variant LOW 384T>C Gly128Gly
M0029817 GAGHJKHE_00009 10507 4 Skin 0.40 protein_coding synonymous_variant LOW 351C>G Leu117Leu
M0029818 GAGHJKHE_00009 10523 4 Skin 0.40 protein_coding missense_variant MODERATE 335A>G Lys112Arg
M0029819 GAGHJKHE_00009 10603 4 Skin 0.40 protein_coding synonymous_variant LOW 255C>T Tyr85Tyr
M0029820 GAGHJKHE_00009 10648 4 Skin 0.40 protein_coding synonymous_variant LOW 210C>T Asn70Asn
M0029821 GAGHJKHE_00009 10672 4 Skin 0.40 protein_coding synonymous_variant LOW 186C>T Tyr62Tyr
M0029822 GAGHJKHE_00008 10978 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1341G>T None
M0029823 GAGHJKHE_00008 11039 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1402T>C None
M0029824 GAGHJKHE_00008 11133 4 Skin 0.40 protein_coding upstream_gene_variant MODIFIER -1496A>T None
M0029825 GAGHJKHE_00010 11712 3 Skin 0.30 protein_coding synonymous_variant LOW 753C>T Ser251Ser
M0029826 GAGHJKHE_00010 11754 3 Skin 0.30 protein_coding synonymous_variant LOW 711T>C Val237Val
M0029827 GAGHJKHE_00010 11755 3 Skin 0.30 protein_coding missense_variant MODERATE 710T>C Val237Ala
M0029828 GAGHJKHE_00010 11939 3 Skin 0.30 protein_coding missense_variant MODERATE 526A>G Lys176Glu
M0029829 GAGHJKHE_00010 11971 3 Skin 0.30 protein_coding missense_variant MODERATE 494A>G Asp165Gly
M0029830 GAGHJKHE_00010 11976 3 Skin 0.30 protein_coding synonymous_variant LOW 489T>C Asp163Asp
M0029831 GAGHJKHE_00010 12030 3 Skin 0.30 protein_coding synonymous_variant LOW 435C>T Ala145Ala
M0029832 GAGHJKHE_00005 6512 4 Skin 0.40 protein_coding missense_variant MODERATE 805G>C Ala269Pro
M0029833 GAGHJKHE_00006 6589 4 Skin 0.40 protein_coding missense_variant MODERATE 61A>G Thr21Ala
M0029834 GAGHJKHE_00006 6648 4 Skin 0.40 protein_coding synonymous_variant LOW 120C>G Val40Val
M0029835 GAGHJKHE_00006 6689 4 Skin 0.40 protein_coding missense_variant MODERATE 161G>C Gly54Ala
M0029836 GAGHJKHE_00006 6774 4 Skin 0.40 protein_coding synonymous_variant LOW 246T>C Ala82Ala
M0029837 GAGHJKHE_00006 6804 4 Skin 0.40 protein_coding synonymous_variant LOW 276T>C Thr92Thr
M0029838 GAGHJKHE_00006 6840 4 Skin 0.40 protein_coding synonymous_variant LOW 312T>C Asp104Asp
M0029839 GAGHJKHE_00006 6883 5 Skin 0.50 protein_coding synonymous_variant LOW 355C>T Leu119Leu
M0029840 GAGHJKHE_00006 6934 5 Skin 0.50 protein_coding missense_variant MODERATE 406G>T Val136Phe
M0029841 GAGHJKHE_00006 6987 5 Skin 0.50 protein_coding missense_variant MODERATE 459C>A Asp153Glu
M0029842 GAGHJKHE_00004 7487 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2046T>C None
M0029843 GAGHJKHE_00004 7498 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2057G>A None
M0029844 GAGHJKHE_00004 7525 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2084C>T None
M0029845 GAGHJKHE_00004 7537 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2096A>G None
M0029846 GAGHJKHE_00004 7545 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2104G>A None
M0029847 GAGHJKHE_00004 7548 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2107G>A None
M0029848 GAGHJKHE_00004 7555 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2114G>C None
M0029849 GAGHJKHE_00004 7556 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2115C>G None
M0029850 GAGHJKHE_00004 7560 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2119A>G None
M0029851 GAGHJKHE_00004 7565 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2124T>A None
M0029852 GAGHJKHE_00004 7600 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2159T>C None
M0029853 GAGHJKHE_00004 7603 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2162G>T None
M0029854 GAGHJKHE_00004 7620 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2179G>T None
M0029855 GAGHJKHE_00004 7678 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2237T>G None
M0029856 GAGHJKHE_00004 7682 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2241A>T None
M0029857 GAGHJKHE_00004 7770 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2329A>G None
M0029858 GAGHJKHE_00004 7786 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2345C>A None
M0029859 GAGHJKHE_00004 7846 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2405G>C None
M0029860 GAGHJKHE_00004 7870 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2429A>G None
M0029861 GAGHJKHE_00004 7904 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2463A>G None
M0029862 GAGHJKHE_00004 7960 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2519A>G None
M0029863 GAGHJKHE_00004 7963 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2522G>C None
M0029864 GAGHJKHE_00004 8188 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2747A>G None
M0029865 GAGHJKHE_00004 8194 5 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -2753C>T None
M0029866 GAGHJKHE_00007 8258 5 Skin 0.50 protein_coding missense_variant MODERATE 35G>T Arg12Leu
M0029867 GAGHJKHE_00007 8317 4 Skin 0.40 protein_coding missense_variant MODERATE 94C>T Leu32Phe
M0029868 GAGHJKHE_00007 8386 5 Skin 0.50 protein_coding missense_variant MODERATE 163G>C Gly55Arg
M0029869 GAGHJKHE_00007 8406 5 Skin 0.50 protein_coding synonymous_variant LOW 183C>T Phe61Phe
M0029870 GAGHJKHE_00008 8795 5 Skin 0.50 protein_coding synonymous_variant LOW 843G>C Thr281Thr
M0029871 GAGHJKHE_00008 8828 5 Skin 0.50 protein_coding synonymous_variant LOW 810G>T Ala270Ala
M0029872 GAGHJKHE_00008 8830 5 Skin 0.50 protein_coding missense_variant MODERATE 808G>C Ala270Pro
M0029873 GAGHJKHE_00008 8864 5 Skin 0.50 protein_coding synonymous_variant LOW 774C>G Ala258Ala
M0029874 GAGHJKHE_00008 9098 4 Skin 0.40 protein_coding synonymous_variant LOW 540G>C Leu180Leu
M0029875 GAGHJKHE_00008 9200 5 Skin 0.50 protein_coding synonymous_variant LOW 438C>T Asp146Asp
M0029876 GAGHJKHE_00008 9218 5 Skin 0.50 protein_coding synonymous_variant LOW 420G>A Glu140Glu
M0029877 GAGHJKHE_00008 9245 5 Skin 0.50 protein_coding synonymous_variant LOW 393G>A Glu131Glu
M0029878 GAGHJKHE_00008 9249 5 Skin 0.50 protein_coding missense_variant MODERATE 389G>C Gly130Ala
M0029879 GAGHJKHE_00008 9275 5 Skin 0.50 protein_coding synonymous_variant LOW 363C>A Val121Val
M0029880 GAGHJKHE_00004 5513 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -72C>G None
M0029881 GAGHJKHE_00004 5524 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -83C>T None
M0029882 GAGHJKHE_00004 5541 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -100G>C None
M0029883 GAGHJKHE_00004 5548 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -107G>C None
M0029884 GAGHJKHE_00004 5592 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -151T>G None
M0029885 GAGHJKHE_00004 5598 3 Skin 0.30 protein_coding upstream_gene_variant MODIFIER -157T>G None
M0029886 GAGHJKHE_00005 5743 3 Skin 0.30 protein_coding synonymous_variant LOW 36T>C Ser12Ser
M0029887 GAGHJKHE_00005 5794 3 Skin 0.30 protein_coding synonymous_variant LOW 87T>C Leu29Leu
M0029888 GAGHJKHE_00005 5884 3 Skin 0.30 protein_coding synonymous_variant LOW 177C>A Ala59Ala
M0029889 GAGHJKHE_00005 5974 3 Skin 0.30 protein_coding synonymous_variant LOW 267C>G Ser89Ser
M0029890 GAGHJKHE_00005 6053 3 Skin 0.30 protein_coding missense_variant MODERATE 346G>A Ala116Thr
M0029891 GAGHJKHE_00005 6067 3 Skin 0.30 protein_coding synonymous_variant LOW 360C>G Ser120Ser
M0029892 GAGHJKHE_00005 6127 3 Skin 0.30 protein_coding synonymous_variant LOW 420T>C Asp140Asp
M0029893 GAGHJKHE_00005 6313 3 Skin 0.30 protein_coding synonymous_variant LOW 606A>C Thr202Thr
M0029894 GAGHJKHE_00005 6378 3 Skin 0.30 protein_coding missense_variant MODERATE 671A>G Asn224Ser
M0029895 GAGHJKHE_00005 6388 3 Skin 0.30 protein_coding synonymous_variant LOW 681C>T Gly227Gly
M0029896 GAGHJKHE_00005 6424 3 Skin 0.30 protein_coding synonymous_variant LOW 717A>G Ala239Ala
M0029897 GAGHJKHE_00005 6460 3 Skin 0.30 protein_coding synonymous_variant LOW 753G>C Thr251Thr
M0029898 GAGHJKHE_00005 6481 3 Skin 0.30 protein_coding synonymous_variant LOW 774C>T Asp258Asp
M0029899 GAGHJKHE_00008 9320 4 Skin 0.40 protein_coding synonymous_variant LOW 318C>T Tyr106Tyr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term