Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2206
  Reference Plasmid   1111525849748616_bin.21__k141_415044
  Reference Plasmid Size   46925
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0029900 BAHHCFHN_00042 43433 3 Skin 0.33 protein_coding synonymous_variant LOW 1422C>T Leu474Leu
M0029901 BAHHCFHN_00042 43454 3 Skin 0.33 protein_coding synonymous_variant LOW 1443T>C Ala481Ala
M0029902 BAHHCFHN_00038 43547 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4467G>A None
M0029903 BAHHCFHN_00038 43548 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4468C>T None
M0029904 BAHHCFHN_00044 44744 3 Skin 0.33 protein_coding synonymous_variant LOW 582C>T Ile194Ile
M0029905 BAHHCFHN_00044 44760 3 Skin 0.33 protein_coding synonymous_variant LOW 598C>T Leu200Leu
M0029906 BAHHCFHN_00044 44801 3 Skin 0.33 protein_coding synonymous_variant LOW 639C>G Ala213Ala
M0029907 BAHHCFHN_00044 45035 3 Skin 0.33 protein_coding synonymous_variant LOW 873C>T Leu291Leu
M0029908 BAHHCFHN_00044 45069 3 Skin 0.33 protein_coding missense_variant MODERATE 907A>G Asn303Asp
M0029909 BAHHCFHN_00044 45104 3 Skin 0.33 protein_coding synonymous_variant LOW 942C>G Ala314Ala
M0029910 BAHHCFHN_00044 45107 3 Skin 0.33 protein_coding synonymous_variant LOW 945G>A Gly315Gly
M0029911 BAHHCFHN_00044 45110 3 Skin 0.33 protein_coding synonymous_variant LOW 948A>G Leu316Leu
M0029912 BAHHCFHN_00044 45125 3 Skin 0.33 protein_coding synonymous_variant LOW 963T>G Thr321Thr
M0029913 BAHHCFHN_00044 45281 3 Skin 0.33 protein_coding synonymous_variant LOW 1119C>G Leu373Leu
M0029914 BAHHCFHN_00045 45468 3 Skin 0.33 protein_coding synonymous_variant LOW 60A>G Ala20Ala
M0029915 BAHHCFHN_00045 45469 3 Skin 0.33 protein_coding missense_variant MODERATE 61G>A Ala21Thr
M0029916 BAHHCFHN_00045 45471 3 Skin 0.33 protein_coding synonymous_variant LOW 63C>G Ala21Ala
M0029917 BAHHCFHN_00045 45519 3 Skin 0.33 protein_coding synonymous_variant LOW 111C>T Ile37Ile
M0029918 BAHHCFHN_00045 45576 4 Skin 0.44 protein_coding synonymous_variant LOW 168G>C Pro56Pro
M0029919 BAHHCFHN_00045 45714 4 Skin 0.44 protein_coding synonymous_variant LOW 306T>C Asn102Asn
M0029920 BAHHCFHN_00045 45738 4 Skin 0.44 protein_coding synonymous_variant LOW 330A>C Leu110Leu
M0029921 BAHHCFHN_00045 45744 4 Skin 0.44 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0029922 BAHHCFHN_00045 45785 4 Skin 0.44 protein_coding missense_variant MODERATE 377C>A Ala126Glu
M0029923 BAHHCFHN_00045 45786 4 Skin 0.44 protein_coding synonymous_variant LOW 378A>G Ala126Ala
M0029924 BAHHCFHN_00045 45963 4 Skin 0.44 protein_coding synonymous_variant LOW 555C>T Asp185Asp
M0029925 BAHHCFHN_00045 46097 4 Skin 0.44 protein_coding missense_variant MODERATE 689T>C Val230Ala
M0029926 BAHHCFHN_00040 46123 4 Skin 0.44 protein_coding downstream_gene_variant MODIFIER *4601A>T None
M0029927 BAHHCFHN_00040 46132 4 Skin 0.44 protein_coding downstream_gene_variant MODIFIER *4610C>G None
M0029928 BAHHCFHN_00040 46159 4 Skin 0.44 protein_coding downstream_gene_variant MODIFIER *4637T>C None
M0029929 BAHHCFHN_00040 46160 4 Skin 0.44 protein_coding downstream_gene_variant MODIFIER *4638T>C None
M0029930 BAHHCFHN_00046 46344 4 Skin 0.44 protein_coding synonymous_variant LOW 579T>C Asp193Asp
M0029931 BAHHCFHN_00046 46347 4 Skin 0.44 protein_coding synonymous_variant LOW 576A>C Ala192Ala
M0029932 BAHHCFHN_00046 46393 4 Skin 0.44 protein_coding missense_variant MODERATE 530A>G His177Arg
M0029933 BAHHCFHN_00046 46795 4 Skin 0.44 protein_coding missense_variant MODERATE 128T>C Phe43Ser
M0029934 BAHHCFHN_00046 46828 4 Skin 0.44 protein_coding missense_variant MODERATE 95G>C Ser32Thr
M0029935 BAHHCFHN_00026 27778 3 Skin 0.33 protein_coding synonymous_variant LOW 516T>C Gly172Gly
M0029936 BAHHCFHN_00026 27826 3 Skin 0.33 protein_coding synonymous_variant LOW 468G>A Glu156Glu
M0029937 BAHHCFHN_00026 27877 3 Skin 0.33 protein_coding synonymous_variant LOW 417C>T Gly139Gly
M0029938 BAHHCFHN_00026 27994 3 Skin 0.33 protein_coding synonymous_variant LOW 300C>T Pro100Pro
M0029939 BAHHCFHN_00026 28003 3 Skin 0.33 protein_coding synonymous_variant LOW 291A>G Glu97Glu
M0029940 BAHHCFHN_00026 28033 3 Skin 0.33 protein_coding synonymous_variant LOW 261C>T Asp87Asp
M0029941 BAHHCFHN_00026 28066 3 Skin 0.33 protein_coding synonymous_variant LOW 228G>A Glu76Glu
M0029942 BAHHCFHN_00026 28171 3 Skin 0.33 protein_coding synonymous_variant LOW 123C>G Pro41Pro
M0029943 BAHHCFHN_00026 28261 3 Skin 0.33 protein_coding synonymous_variant LOW 33C>A Leu11Leu
M0029944 BAHHCFHN_00026 28269 3 Skin 0.33 protein_coding missense_variant MODERATE 25C>A Leu9Met
M0029945 BAHHCFHN_00027 28295 3 Skin 0.33 protein_coding missense_variant MODERATE 256A>G Lys86Glu
M0029946 BAHHCFHN_00027 28356 3 Skin 0.33 protein_coding synonymous_variant LOW 195T>C Arg65Arg
M0029947 BAHHCFHN_00028 28830 3 Skin 0.33 protein_coding missense_variant MODERATE 50G>A Arg17Gln
M0029948 BAHHCFHN_00028 28831 3 Skin 0.33 protein_coding synonymous_variant LOW 51G>A Arg17Arg
M0029949 BAHHCFHN_00028 28903 3 Skin 0.33 protein_coding synonymous_variant LOW 123C>T Tyr41Tyr
M0029950 BAHHCFHN_00028 29000 3 Skin 0.33 protein_coding missense_variant MODERATE 220A>T Thr74Ser
M0029951 BAHHCFHN_00028 29152 3 Skin 0.33 protein_coding synonymous_variant LOW 372C>G Ala124Ala
M0029952 BAHHCFHN_00028 29329 3 Skin 0.33 protein_coding synonymous_variant LOW 549G>T Ala183Ala
M0029953 BAHHCFHN_00010 9803 3 Skin 0.33 protein_coding synonymous_variant LOW 951G>C Ala317Ala
M0029954 BAHHCFHN_00010 9827 3 Skin 0.33 protein_coding synonymous_variant LOW 927T>C Ser309Ser
M0029955 BAHHCFHN_00010 9836 3 Skin 0.33 protein_coding synonymous_variant LOW 918C>T His306His
M0029956 BAHHCFHN_00010 10256 3 Skin 0.33 protein_coding synonymous_variant LOW 498T>C Gly166Gly
M0029957 BAHHCFHN_00010 10265 3 Skin 0.33 protein_coding synonymous_variant LOW 489T>G Leu163Leu
M0029958 BAHHCFHN_00007 11418 3 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -4571A>G None
M0029959 BAHHCFHN_00012 11489 3 Skin 0.33 protein_coding synonymous_variant LOW 18C>T Pro6Pro
M0029960 BAHHCFHN_00012 11558 3 Skin 0.33 protein_coding synonymous_variant LOW 87G>T Leu29Leu
M0029961 BAHHCFHN_00012 11570 3 Skin 0.33 protein_coding synonymous_variant LOW 99C>G Arg33Arg
M0029962 BAHHCFHN_00012 11630 3 Skin 0.33 protein_coding synonymous_variant LOW 159T>C Tyr53Tyr
M0029963 BAHHCFHN_00012 11651 3 Skin 0.33 protein_coding synonymous_variant LOW 180T>C Arg60Arg
M0029964 BAHHCFHN_00012 11654 3 Skin 0.33 protein_coding synonymous_variant LOW 183T>C Tyr61Tyr
M0029965 BAHHCFHN_00012 11666 3 Skin 0.33 protein_coding synonymous_variant LOW 195C>T Arg65Arg
M0029966 BAHHCFHN_00012 11672 3 Skin 0.33 protein_coding synonymous_variant LOW 201G>C Ala67Ala
M0029967 BAHHCFHN_00012 11789 3 Skin 0.33 protein_coding synonymous_variant LOW 318C>G Pro106Pro
M0029968 BAHHCFHN_00012 11894 3 Skin 0.33 protein_coding synonymous_variant LOW 423A>C Arg141Arg
M0029969 BAHHCFHN_00012 11897 3 Skin 0.33 protein_coding synonymous_variant LOW 426G>C Leu142Leu
M0029970 BAHHCFHN_00012 12131 3 Skin 0.33 protein_coding synonymous_variant LOW 660T>C Asp220Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term