Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2215
  Reference Plasmid   1111525849751715_bin.30__k141_274941
  Reference Plasmid Size   10487
  Reference Plasmid GC Content   0.63
  Reference Plasmid Mobility Type   mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0030141 LNHDBPHC_00002 5387 8 Skin 0.31 protein_coding synonymous_variant LOW 2158C>T Leu720Leu
M0030142 LNHDBPHC_00002 5407 8 Skin 0.31 protein_coding missense_variant MODERATE 2178T>G Asp726Glu
M0030143 LNHDBPHC_00002 5424 8 Skin 0.31 protein_coding missense_variant MODERATE 2195C>A Ala732Glu
M0030144 LNHDBPHC_00002 5434 8 Skin 0.31 protein_coding synonymous_variant LOW 2205C>T Asp735Asp
M0030145 LNHDBPHC_00002 5449 8 Skin 0.31 protein_coding synonymous_variant LOW 2220C>A Pro740Pro
M0030146 LNHDBPHC_00002 5464 8 Skin 0.31 protein_coding synonymous_variant LOW 2235C>T Arg745Arg
M0030147 LNHDBPHC_00002 5467 8 Skin 0.31 protein_coding synonymous_variant LOW 2238C>T Asp746Asp
M0030148 LNHDBPHC_00002 4129 5 Skin 0.19 protein_coding synonymous_variant LOW 900A>C Pro300Pro
M0030149 LNHDBPHC_00002 4135 5 Skin 0.19 protein_coding synonymous_variant LOW 906A>G Ala302Ala
M0030150 LNHDBPHC_00002 4147 5 Skin 0.19 protein_coding synonymous_variant LOW 918C>G Thr306Thr
M0030151 LNHDBPHC_00002 4170 5 Skin 0.19 protein_coding missense_variant MODERATE 941C>A Ala314Glu
M0030152 LNHDBPHC_00002 4192 7 Skin 0.27 protein_coding synonymous_variant LOW 963C>T Asp321Asp
M0030153 LNHDBPHC_00002 5608 4 Skin 0.15 protein_coding synonymous_variant LOW 2379A>G Gly793Gly
M0030154 LNHDBPHC_00002 5614 4 Skin 0.15 protein_coding synonymous_variant LOW 2385T>C His795His
M0030155 LNHDBPHC_00002 4576 5 Skin 0.19 protein_coding synonymous_variant LOW 1347T>C Asp449Asp
M0030156 LNHDBPHC_00002 4579 5 Skin 0.19 protein_coding synonymous_variant LOW 1350A>G Ala450Ala
M0030157 LNHDBPHC_00002 4597 5 Skin 0.19 protein_coding synonymous_variant LOW 1368C>T Asp456Asp
M0030158 LNHDBPHC_00002 4603 5 Skin 0.19 protein_coding synonymous_variant LOW 1374C>T Gly458Gly
M0030159 LNHDBPHC_00002 4615 5 Skin 0.19 protein_coding synonymous_variant LOW 1386T>C Phe462Phe
M0030160 LNHDBPHC_00002 4633 5 Skin 0.19 protein_coding synonymous_variant LOW 1404G>T Leu468Leu
M0030161 LNHDBPHC_00002 4660 6 Skin 0.23 protein_coding synonymous_variant LOW 1431C>G Leu477Leu
M0030162 LNHDBPHC_00002 4663 6 Skin 0.23 protein_coding synonymous_variant LOW 1434G>C Val478Val
M0030163 LNHDBPHC_00002 4684 6 Skin 0.23 protein_coding synonymous_variant LOW 1455C>G Gly485Gly
M0030164 LNHDBPHC_00002 4717 6 Skin 0.23 protein_coding synonymous_variant LOW 1488G>A Glu496Glu
M0030165 LNHDBPHC_00002 4759 7 Skin 0.27 protein_coding synonymous_variant LOW 1530T>C Arg510Arg
M0030166 LNHDBPHC_00002 4774 7 Skin 0.27 protein_coding synonymous_variant LOW 1545A>G Glu515Glu
M0030167 LNHDBPHC_00002 4777 7 Skin 0.27 protein_coding synonymous_variant LOW 1548T>C Ile516Ile
M0030168 LNHDBPHC_00002 4783 7 Skin 0.27 protein_coding synonymous_variant LOW 1554A>G Ala518Ala
M0030169 LNHDBPHC_00002 4786 7 Skin 0.27 protein_coding synonymous_variant LOW 1557C>G Pro519Pro
M0030170 LNHDBPHC_00002 4817 7 Skin 0.27 protein_coding synonymous_variant LOW 1588T>C Leu530Leu
M0030171 LNHDBPHC_00002 4834 7 Skin 0.27 protein_coding synonymous_variant LOW 1605C>T Ile535Ile
M0030172 LNHDBPHC_00002 4843 7 Skin 0.27 protein_coding synonymous_variant LOW 1614T>C His538His
M0030173 LNHDBPHC_00002 4864 7 Skin 0.27 protein_coding synonymous_variant LOW 1635G>A Ala545Ala
M0030174 LNHDBPHC_00002 4885 7 Skin 0.27 protein_coding synonymous_variant LOW 1656G>A Leu552Leu
M0030175 LNHDBPHC_00002 4894 7 Skin 0.27 protein_coding synonymous_variant LOW 1665T>C Val555Val
M0030176 LNHDBPHC_00002 4897 7 Skin 0.27 protein_coding synonymous_variant LOW 1668C>G Thr556Thr
M0030177 LNHDBPHC_00002 4900 7 Skin 0.27 protein_coding synonymous_variant LOW 1671C>T Gly557Gly
M0030178 LNHDBPHC_00002 4906 7 Skin 0.27 protein_coding synonymous_variant LOW 1677T>C Ser559Ser
M0030179 LNHDBPHC_00002 4948 7 Skin 0.27 protein_coding synonymous_variant LOW 1719A>G Glu573Glu
M0030180 LNHDBPHC_00002 4960 7 Skin 0.27 protein_coding synonymous_variant LOW 1731G>A Leu577Leu
M0030181 LNHDBPHC_00002 4990 7 Skin 0.27 protein_coding synonymous_variant LOW 1761C>G Ala587Ala
M0030182 LNHDBPHC_00002 4996 7 Skin 0.27 protein_coding missense_variant MODERATE 1767A>T Glu589Asp
M0030183 LNHDBPHC_00002 4998 7 Skin 0.27 protein_coding missense_variant MODERATE 1769G>A Ser590Asn
M0030184 LNHDBPHC_00002 5008 7 Skin 0.27 protein_coding synonymous_variant LOW 1779C>T Ser593Ser
M0030185 LNHDBPHC_00002 5020 7 Skin 0.27 protein_coding synonymous_variant LOW 1791A>C Ala597Ala
M0030186 LNHDBPHC_00002 5024 7 Skin 0.27 protein_coding missense_variant MODERATE 1795G>A Val599Ile
M0030187 LNHDBPHC_00002 5038 7 Skin 0.27 protein_coding synonymous_variant LOW 1809C>T Gly603Gly
M0030188 LNHDBPHC_00002 5041 7 Skin 0.27 protein_coding synonymous_variant LOW 1812C>T Gly604Gly
M0030189 LNHDBPHC_00002 5269 9 Skin 0.35 protein_coding synonymous_variant LOW 2040T>G Val680Val
M0030190 LNHDBPHC_00002 5314 9 Skin 0.35 protein_coding synonymous_variant LOW 2085G>T Pro695Pro
M0030191 LNHDBPHC_00002 5317 9 Skin 0.35 protein_coding synonymous_variant LOW 2088C>G Thr696Thr
M0030192 LNHDBPHC_00002 5329 9 Skin 0.35 protein_coding synonymous_variant LOW 2100G>A Ala700Ala
M0030193 LNHDBPHC_00007 9985 3 Skin 0.12 protein_coding synonymous_variant LOW 180G>A Ala60Ala
M0030194 LNHDBPHC_00002 5095 7 Skin 0.27 protein_coding synonymous_variant LOW 1866G>A Lys622Lys
M0030195 LNHDBPHC_00002 5101 7 Skin 0.27 protein_coding synonymous_variant LOW 1872C>T Ile624Ile
M0030196 LNHDBPHC_00002 5137 7 Skin 0.27 protein_coding synonymous_variant LOW 1908G>C Thr636Thr
M0030197 LNHDBPHC_00002 5140 7 Skin 0.27 protein_coding synonymous_variant LOW 1911T>C Gly637Gly
M0030198 LNHDBPHC_00002 5149 7 Skin 0.27 protein_coding synonymous_variant LOW 1920C>T Asp640Asp
M0030199 LNHDBPHC_00002 5155 7 Skin 0.27 protein_coding synonymous_variant LOW 1926G>A Val642Val
M0030200 LNHDBPHC_00002 5185 8 Skin 0.31 protein_coding synonymous_variant LOW 1956T>G Ala652Ala
M0030201 LNHDBPHC_00002 5203 8 Skin 0.31 protein_coding synonymous_variant LOW 1974T>C Asp658Asp
M0030202 LNHDBPHC_00002 5227 8 Skin 0.31 protein_coding synonymous_variant LOW 1998C>T Val666Val
M0030203 LNHDBPHC_00002 4274 4 Skin 0.15 protein_coding missense_variant MODERATE 1045C>A Pro349Thr
M0030204 LNHDBPHC_00002 4321 4 Skin 0.15 protein_coding synonymous_variant LOW 1092T>C Arg364Arg
M0030205 LNHDBPHC_00002 4327 4 Skin 0.15 protein_coding synonymous_variant LOW 1098C>G Ser366Ser
M0030206 LNHDBPHC_00002 4333 4 Skin 0.15 protein_coding synonymous_variant LOW 1104G>A Leu368Leu
M0030207 LNHDBPHC_00002 4357 4 Skin 0.15 protein_coding synonymous_variant LOW 1128A>G Ala376Ala
M0030208 LNHDBPHC_00002 4369 4 Skin 0.15 protein_coding synonymous_variant LOW 1140T>C Ala380Ala
M0030209 LNHDBPHC_00002 4372 4 Skin 0.15 protein_coding synonymous_variant LOW 1143A>T Gly381Gly
M0030210 LNHDBPHC_00002 4393 4 Skin 0.15 protein_coding synonymous_variant LOW 1164C>T Arg388Arg
M0030211 LNHDBPHC_00002 4402 4 Skin 0.15 protein_coding synonymous_variant LOW 1173C>T Arg391Arg
M0030212 LNHDBPHC_00002 4404 4 Skin 0.15 protein_coding missense_variant MODERATE 1175A>G Glu392Gly
M0030213 LNHDBPHC_00002 4408 4 Skin 0.15 protein_coding synonymous_variant LOW 1179A>G Leu393Leu
M0030214 LNHDBPHC_00002 4411 4 Skin 0.15 protein_coding synonymous_variant LOW 1182C>T Gly394Gly
M0030215 LNHDBPHC_00002 4412 4 Skin 0.15 protein_coding synonymous_variant LOW 1183C>T Leu395Leu
M0030216 LNHDBPHC_00002 4417 4 Skin 0.15 protein_coding synonymous_variant LOW 1188C>T Gly396Gly
M0030217 LNHDBPHC_00002 4435 4 Skin 0.15 protein_coding synonymous_variant LOW 1206G>A Arg402Arg
M0030218 LNHDBPHC_00002 4472 4 Skin 0.15 protein_coding synonymous_variant LOW 1243T>C Leu415Leu
M0030219 LNHDBPHC_00002 4492 4 Skin 0.15 protein_coding synonymous_variant LOW 1263A>G Leu421Leu
M0030220 LNHDBPHC_00002 4522 4 Skin 0.15 protein_coding synonymous_variant LOW 1293A>G Val431Val
M0030221 LNHDBPHC_00002 4525 4 Skin 0.15 protein_coding synonymous_variant LOW 1296T>C Leu432Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term