Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2225
  Reference Plasmid   1111525849753914_bin.29__k141_170873
  Reference Plasmid Size   49616
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0030468 OCEJIBNK_00019 19611 3 Skin 0.23 protein_coding synonymous_variant LOW 573G>C Ala191Ala
M0030469 OCEJIBNK_00020 20057 3 Skin 0.23 protein_coding missense_variant MODERATE 173T>C Val58Ala
M0030470 OCEJIBNK_00021 21085 3 Skin 0.23 protein_coding synonymous_variant LOW 156A>C Gly52Gly
M0030471 OCEJIBNK_00023 23490 3 Skin 0.23 protein_coding synonymous_variant LOW 792G>C Thr264Thr
M0030472 OCEJIBNK_00015 15091 3 Skin 0.23 protein_coding synonymous_variant LOW 141A>C Gly47Gly
M0030473 OCEJIBNK_00016 15504 3 Skin 0.23 protein_coding synonymous_variant LOW 585A>G Leu195Leu
M0030474 OCEJIBNK_00023 24021 3 Skin 0.23 protein_coding synonymous_variant LOW 261G>C Ala87Ala
M0030475 OCEJIBNK_00025 25500 3 Skin 0.23 protein_coding synonymous_variant LOW 642T>G Val214Val
M0030476 OCEJIBNK_00026 26636 3 Skin 0.23 protein_coding missense_variant MODERATE 1169A>G Gln390Arg
M0030477 OCEJIBNK_00026 27205 3 Skin 0.23 protein_coding synonymous_variant LOW 600A>G Glu200Glu
M0030478 OCEJIBNK_00026 27490 3 Skin 0.23 protein_coding synonymous_variant LOW 315C>G Leu105Leu
M0030479 OCEJIBNK_00028 29266 3 Skin 0.23 protein_coding missense_variant MODERATE 367C>G Arg123Gly
M0030480 OCEJIBNK_00029 29833 3 Skin 0.23 protein_coding missense_variant MODERATE 1368C>A Asp456Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
OCEJIBNK_00030 AYF00728.1|GH33 100 9.89e-305 1 399 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term