Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2240
  Reference Plasmid   1111525849755503_bin.7__k141_1065581
  Reference Plasmid Size   12827
  Reference Plasmid GC Content   0.69
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0030837 JKEKFJLF_00008 9569 3 Skin 0.12 protein_coding synonymous_variant LOW 459C>G Ser153Ser
M0030838 JKEKFJLF_00008 9602 3 Skin 0.12 protein_coding synonymous_variant LOW 426T>C Tyr142Tyr
M0030839 JKEKFJLF_00008 9799 6 Skin 0.23 protein_coding missense_variant MODERATE 229A>C Met77Leu
M0030840 JKEKFJLF_00009 10317 4 Skin 0.15 protein_coding synonymous_variant LOW 577T>C Leu193Leu
M0030841 JKEKFJLF_00009 10416 9 Skin 0.35 protein_coding missense_variant MODERATE 478G>A Val160Ile
M0030842 JKEKFJLF_00009 10429 8 Skin 0.31 protein_coding synonymous_variant LOW 465T>C Asn155Asn
M0030843 JKEKFJLF_00009 10591 7 Skin 0.27 protein_coding missense_variant MODERATE 303A>C Glu101Asp
M0030844 JKEKFJLF_00009 10744 5 Skin 0.19 protein_coding synonymous_variant LOW 150G>A Glu50Glu
M0030845 JKEKFJLF_00009 10786 5 Skin 0.19 protein_coding synonymous_variant LOW 108G>T Ala36Ala
M0030846 JKEKFJLF_00009 10833 6 Skin 0.23 protein_coding missense_variant MODERATE 61C>A Leu21Ile
M0030847 JKEKFJLF_00009 10837 6 Skin 0.23 protein_coding synonymous_variant LOW 57T>C Pro19Pro
M0030848 JKEKFJLF_00009 10882 6 Skin 0.23 protein_coding synonymous_variant LOW 12T>C Ala4Ala
M0030849 JKEKFJLF_00007 10898 6 Skin 0.23 protein_coding upstream_gene_variant MODIFIER -1686G>A None
M0030850 JKEKFJLF_00007 11051 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1839T>C None
M0030851 JKEKFJLF_00007 11064 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1852T>C None
M0030852 JKEKFJLF_00007 11067 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -1855T>G None
M0030853 JKEKFJLF_00010 11391 6 Skin 0.23 protein_coding synonymous_variant LOW 213G>C Thr71Thr
M0030854 JKEKFJLF_00010 11475 6 Skin 0.23 protein_coding synonymous_variant LOW 297G>C Thr99Thr
M0030855 JKEKFJLF_00010 11766 7 Skin 0.27 protein_coding synonymous_variant LOW 588G>A Glu196Glu
M0030856 JKEKFJLF_00010 11778 5 Skin 0.19 protein_coding synonymous_variant LOW 600T>C Val200Val
M0030857 JKEKFJLF_00010 11907 3 Skin 0.12 protein_coding synonymous_variant LOW 729T>C Tyr243Tyr
M0030858 JKEKFJLF_00010 12018 5 Skin 0.19 protein_coding synonymous_variant LOW 840G>A Ala280Ala
M0030859 JKEKFJLF_00010 12078 6 Skin 0.23 protein_coding synonymous_variant LOW 900C>G Leu300Leu
M0030860 JKEKFJLF_00007 12442 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -3230A>C None
M0030861 JKEKFJLF_00007 12464 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3252C>T None
M0030862 JKEKFJLF_00007 12534 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3322C>T None
M0030863 JKEKFJLF_00007 12537 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3325T>C None
M0030864 JKEKFJLF_00007 12578 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3366A>G None
M0030865 JKEKFJLF_00004 233 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4183T>C None
M0030866 JKEKFJLF_00004 344 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -4072T>G None
M0030867 JKEKFJLF_00004 649 4 Skin 0.15 protein_coding upstream_gene_variant MODIFIER -3767A>G None
M0030868 JKEKFJLF_00004 692 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3724C>G None
M0030869 JKEKFJLF_00004 694 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3722A>G None
M0030870 JKEKFJLF_00004 717 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3699T>A None
M0030871 JKEKFJLF_00001 1152 3 Skin 0.12 protein_coding synonymous_variant LOW 1122T>C Arg374Arg
M0030872 JKEKFJLF_00001 1632 3 Skin 0.12 protein_coding synonymous_variant LOW 642G>A Ala214Ala
M0030873 JKEKFJLF_00001 1669 6 Skin 0.23 protein_coding missense_variant MODERATE 605G>A Gly202Asp
M0030874 JKEKFJLF_00001 1950 8 Skin 0.31 protein_coding synonymous_variant LOW 324A>G Gly108Gly
M0030875 JKEKFJLF_00001 1983 5 Skin 0.19 protein_coding synonymous_variant LOW 291G>A Glu97Glu
M0030876 JKEKFJLF_00001 2043 5 Skin 0.19 protein_coding synonymous_variant LOW 231G>T Ala77Ala
M0030877 JKEKFJLF_00001 2070 6 Skin 0.23 protein_coding synonymous_variant LOW 204G>C Arg68Arg
M0030878 JKEKFJLF_00001 2154 10 Skin 0.38 protein_coding synonymous_variant LOW 120T>C Gly40Gly
M0030879 JKEKFJLF_00002 2385 10 Skin 0.38 protein_coding missense_variant MODERATE 614G>C Cys205Ser
M0030880 JKEKFJLF_00002 2390 6 Skin 0.23 protein_coding synonymous_variant LOW 609C>G Gly203Gly
M0030881 JKEKFJLF_00002 2403 8 Skin 0.31 protein_coding missense_variant MODERATE 596T>A Leu199Gln
M0030882 JKEKFJLF_00002 2726 4 Skin 0.15 protein_coding synonymous_variant LOW 273C>T Asp91Asp
M0030883 JKEKFJLF_00002 2879 7 Skin 0.27 protein_coding synonymous_variant LOW 120C>T Val40Val
M0030884 JKEKFJLF_00002 2974 4 Skin 0.15 protein_coding missense_variant MODERATE 25G>A Ala9Thr
M0030885 JKEKFJLF_00003 3161 10 Skin 0.38 protein_coding synonymous_variant LOW 1098T>G Val366Val
M0030886 JKEKFJLF_00003 3226 5 Skin 0.19 protein_coding missense_variant MODERATE 1033A>G Ile345Val
M0030887 JKEKFJLF_00003 3580 14 Skin 0.54 protein_coding missense_variant MODERATE 679A>G Met227Val
M0030888 JKEKFJLF_00003 3833 13 Skin 0.50 protein_coding synonymous_variant LOW 426T>C Tyr142Tyr
M0030889 JKEKFJLF_00003 3989 7 Skin 0.27 protein_coding synonymous_variant LOW 270T>C Thr90Thr
M0030890 JKEKFJLF_00003 4057 8 Skin 0.31 protein_coding missense_variant MODERATE 202G>C Glu68Gln
M0030891 JKEKFJLF_00003 4080 3 Skin 0.12 protein_coding missense_variant MODERATE 179A>G Asp60Gly
M0030892 JKEKFJLF_00008 9886 3 Skin 0.12 protein_coding missense_variant MODERATE 142G>A Ala48Thr
M0030893 JKEKFJLF_00009 10111 4 Skin 0.15 protein_coding synonymous_variant LOW 783C>A Ala261Ala
M0030894 JKEKFJLF_00009 10210 7 Skin 0.27 protein_coding synonymous_variant LOW 684T>C Tyr228Tyr
M0030895 JKEKFJLF_00009 10225 7 Skin 0.27 protein_coding synonymous_variant LOW 669G>C Pro223Pro
M0030896 JKEKFJLF_00009 10597 4 Skin 0.15 protein_coding synonymous_variant LOW 297G>A Arg99Arg
M0030897 JKEKFJLF_00010 11847 3 Skin 0.12 protein_coding synonymous_variant LOW 669A>G Glu223Glu
M0030898 JKEKFJLF_00007 12399 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3187G>C None
M0030899 JKEKFJLF_00007 12420 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -3208T>G None
M0030900 JKEKFJLF_00002 2312 6 Skin 0.23 protein_coding missense_variant MODERATE 687G>C Glu229Asp
M0030901 JKEKFJLF_00002 2321 6 Skin 0.23 protein_coding synonymous_variant LOW 678A>C Gly226Gly
M0030902 JKEKFJLF_00002 2465 7 Skin 0.27 protein_coding synonymous_variant LOW 534T>C Phe178Phe
M0030903 JKEKFJLF_00002 2510 7 Skin 0.27 protein_coding synonymous_variant LOW 489A>C Leu163Leu
M0030904 JKEKFJLF_00001 3059 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -786T>C None
M0030905 JKEKFJLF_00001 3072 8 Skin 0.31 protein_coding upstream_gene_variant MODIFIER -799C>G None
M0030906 JKEKFJLF_00003 3185 5 Skin 0.19 protein_coding synonymous_variant LOW 1074C>A Val358Val
M0030907 JKEKFJLF_00003 3467 5 Skin 0.19 protein_coding synonymous_variant LOW 792C>T Asp264Asp
M0030908 JKEKFJLF_00003 3782 8 Skin 0.31 protein_coding synonymous_variant LOW 477T>C Gly159Gly
M0030909 JKEKFJLF_00003 3785 8 Skin 0.31 protein_coding synonymous_variant LOW 474T>C Asp158Asp
M0030910 JKEKFJLF_00003 4244 7 Skin 0.27 protein_coding synonymous_variant LOW 15T>C Ser5Ser
M0030911 JKEKFJLF_00001 4272 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1999T>G None
M0030912 JKEKFJLF_00001 4280 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -2007G>C None
M0030913 JKEKFJLF_00001 4395 5 Skin 0.19 protein_coding upstream_gene_variant MODIFIER -2122A>G None
M0030914 JKEKFJLF_00004 4422 4 Skin 0.15 protein_coding missense_variant MODERATE 7G>A Val3Met
M0030915 JKEKFJLF_00004 4538 4 Skin 0.15 protein_coding synonymous_variant LOW 123T>C Tyr41Tyr
M0030916 JKEKFJLF_00004 4805 6 Skin 0.23 protein_coding synonymous_variant LOW 390T>C Ile130Ile
M0030917 JKEKFJLF_00004 4868 4 Skin 0.15 protein_coding synonymous_variant LOW 453G>A Glu151Glu
M0030918 JKEKFJLF_00004 4895 6 Skin 0.23 protein_coding synonymous_variant LOW 480T>G Ala160Ala
M0030919 JKEKFJLF_00004 4926 4 Skin 0.15 protein_coding missense_variant MODERATE 511G>A Val171Ile
M0030920 JKEKFJLF_00004 5105 4 Skin 0.15 protein_coding synonymous_variant LOW 690A>G Glu230Glu
M0030921 JKEKFJLF_00004 5174 4 Skin 0.15 protein_coding synonymous_variant LOW 759T>C Ile253Ile
M0030922 JKEKFJLF_00001 5435 7 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3162A>G None
M0030923 JKEKFJLF_00005 5723 6 Skin 0.23 protein_coding synonymous_variant LOW 252G>C Leu84Leu
M0030924 JKEKFJLF_00005 5729 6 Skin 0.23 protein_coding synonymous_variant LOW 258G>C Ala86Ala
M0030925 JKEKFJLF_00005 5951 4 Skin 0.15 protein_coding synonymous_variant LOW 480A>G Ala160Ala
M0030926 JKEKFJLF_00005 5966 9 Skin 0.35 protein_coding synonymous_variant LOW 495A>G Ala165Ala
M0030927 JKEKFJLF_00005 6014 9 Skin 0.35 protein_coding synonymous_variant LOW 543T>C Asp181Asp
M0030928 JKEKFJLF_00005 6047 5 Skin 0.19 protein_coding synonymous_variant LOW 576G>C Gly192Gly
M0030929 JKEKFJLF_00005 6155 7 Skin 0.27 protein_coding synonymous_variant LOW 684A>C Thr228Thr
M0030930 JKEKFJLF_00005 6293 9 Skin 0.35 protein_coding synonymous_variant LOW 822T>G Leu274Leu
M0030931 JKEKFJLF_00005 6365 7 Skin 0.27 protein_coding synonymous_variant LOW 894A>G Leu298Leu
M0030932 JKEKFJLF_00005 6686 6 Skin 0.23 protein_coding synonymous_variant LOW 1215G>C Ala405Ala
M0030933 JKEKFJLF_00005 7118 6 Skin 0.23 protein_coding synonymous_variant LOW 1647T>C Ala549Ala
M0030934 JKEKFJLF_00006 7622 5 Skin 0.19 protein_coding missense_variant MODERATE 19A>G Thr7Ala
M0030935 JKEKFJLF_00006 7646 4 Skin 0.15 protein_coding missense_variant MODERATE 43C>A His15Asn
M0030936 JKEKFJLF_00006 7922 7 Skin 0.27 protein_coding missense_variant MODERATE 319C>G Pro107Ala
M0030937 JKEKFJLF_00006 7936 7 Skin 0.27 protein_coding synonymous_variant LOW 333T>C Thr111Thr
M0030938 JKEKFJLF_00007 8568 5 Skin 0.19 protein_coding synonymous_variant LOW 645G>A Glu215Glu
M0030939 JKEKFJLF_00007 8718 8 Skin 0.31 protein_coding synonymous_variant LOW 495T>C Ala165Ala
M0030940 JKEKFJLF_00007 8797 8 Skin 0.31 protein_coding missense_variant MODERATE 416C>G Ala139Gly
M0030941 JKEKFJLF_00007 8862 9 Skin 0.35 protein_coding synonymous_variant LOW 351G>C Ala117Ala
M0030942 JKEKFJLF_00007 8913 9 Skin 0.35 protein_coding synonymous_variant LOW 300C>G Val100Val
M0030943 JKEKFJLF_00008 9311 5 Skin 0.19 protein_coding synonymous_variant LOW 717C>G Ala239Ala
M0030944 JKEKFJLF_00008 9485 3 Skin 0.12 protein_coding synonymous_variant LOW 543C>G Val181Val
M0030945 JKEKFJLF_00001 1365 5 Skin 0.19 protein_coding synonymous_variant LOW 909G>C Gly303Gly
M0030946 JKEKFJLF_00001 1827 6 Skin 0.23 protein_coding synonymous_variant LOW 447C>T Gly149Gly
M0030947 JKEKFJLF_00002 2660 6 Skin 0.23 protein_coding synonymous_variant LOW 339C>G Thr113Thr
M0030948 JKEKFJLF_00003 3284 3 Skin 0.12 protein_coding synonymous_variant LOW 975C>G Thr325Thr
M0030949 JKEKFJLF_00003 3614 4 Skin 0.15 protein_coding synonymous_variant LOW 645C>G Arg215Arg
M0030950 JKEKFJLF_00003 3933 3 Skin 0.12 protein_coding missense_variant MODERATE 326T>C Val109Ala
M0030951 JKEKFJLF_00006 7737 7 Skin 0.27 protein_coding missense_variant MODERATE 134C>T Thr45Ile
M0030952 JKEKFJLF_00006 7792 4 Skin 0.15 protein_coding synonymous_variant LOW 189C>A Val63Val
M0030953 JKEKFJLF_00006 7867 3 Skin 0.12 protein_coding synonymous_variant LOW 264C>G Thr88Thr
M0030954 JKEKFJLF_00007 8163 3 Skin 0.12 protein_coding synonymous_variant LOW 1050C>G Gly350Gly
M0030955 JKEKFJLF_00007 8427 3 Skin 0.12 protein_coding synonymous_variant LOW 786C>T Ala262Ala
M0030956 JKEKFJLF_00007 8775 4 Skin 0.15 protein_coding synonymous_variant LOW 438C>T Tyr146Tyr
M0030957 JKEKFJLF_00007 8844 4 Skin 0.15 protein_coding synonymous_variant LOW 369T>C Asp123Asp
M0030958 JKEKFJLF_00009 10291 4 Skin 0.15 protein_coding synonymous_variant LOW 603C>T Phe201Phe
M0030959 JKEKFJLF_00010 11709 4 Skin 0.15 protein_coding synonymous_variant LOW 531T>C Leu177Leu
M0030960 JKEKFJLF_00010 11739 3 Skin 0.12 protein_coding synonymous_variant LOW 561T>C Ile187Ile
M0030961 JKEKFJLF_00010 11742 3 Skin 0.12 protein_coding synonymous_variant LOW 564C>G Ser188Ser
M0030962 JKEKFJLF_00010 11931 3 Skin 0.12 protein_coding synonymous_variant LOW 753G>C Gly251Gly
M0030963 JKEKFJLF_00003 4130 6 Skin 0.23 protein_coding synonymous_variant LOW 129T>C Tyr43Tyr
M0030964 JKEKFJLF_00003 4153 8 Skin 0.31 protein_coding synonymous_variant LOW 106C>T Leu36Leu
M0030965 JKEKFJLF_00004 5032 5 Skin 0.19 protein_coding missense_variant MODERATE 617C>G Ala206Gly
M0030966 JKEKFJLF_00005 5873 13 Skin 0.50 protein_coding synonymous_variant LOW 402T>C Val134Val
M0030967 JKEKFJLF_00005 6242 5 Skin 0.19 protein_coding synonymous_variant LOW 771A>G Ser257Ser
M0030968 JKEKFJLF_00005 6269 5 Skin 0.19 protein_coding synonymous_variant LOW 798C>T Thr266Thr
M0030969 JKEKFJLF_00002 2636 3 Skin 0.12 protein_coding synonymous_variant LOW 363C>G Val121Val
M0030970 JKEKFJLF_00003 3239 5 Skin 0.19 protein_coding synonymous_variant LOW 1020G>C Ser340Ser
M0030971 JKEKFJLF_00003 3392 3 Skin 0.12 protein_coding synonymous_variant LOW 867C>A Thr289Thr
M0030972 JKEKFJLF_00004 5110 5 Skin 0.19 protein_coding missense_variant MODERATE 695C>A Thr232Asn
M0030973 JKEKFJLF_00004 5111 5 Skin 0.19 protein_coding synonymous_variant LOW 696C>T Thr232Thr
M0030974 JKEKFJLF_00005 6176 6 Skin 0.23 protein_coding synonymous_variant LOW 705G>C Val235Val
M0030975 JKEKFJLF_00005 6701 5 Skin 0.19 protein_coding synonymous_variant LOW 1230A>G Gly410Gly
M0030976 JKEKFJLF_00006 7817 3 Skin 0.12 protein_coding missense_variant MODERATE 214C>G Gln72Glu
M0030977 JKEKFJLF_00006 7823 3 Skin 0.12 protein_coding missense_variant MODERATE 220G>C Asp74His
M0030978 JKEKFJLF_00007 8382 3 Skin 0.12 protein_coding synonymous_variant LOW 831A>G Pro277Pro
M0030979 JKEKFJLF_00006 7918 3 Skin 0.12 protein_coding synonymous_variant LOW 315G>T Arg105Arg
M0030980 JKEKFJLF_00003 3644 3 Skin 0.12 protein_coding synonymous_variant LOW 615C>G Ala205Ala
M0030981 JKEKFJLF_00005 6410 5 Skin 0.19 protein_coding synonymous_variant LOW 939G>A Thr313Thr
M0030982 JKEKFJLF_00005 6416 6 Skin 0.23 protein_coding synonymous_variant LOW 945G>C Gly315Gly
M0030983 JKEKFJLF_00005 6426 4 Skin 0.15 protein_coding missense_variant MODERATE 955G>A Val319Ile
M0030984 JKEKFJLF_00005 6435 5 Skin 0.19 protein_coding missense_variant MODERATE 964G>A Val322Ile
M0030985 JKEKFJLF_00005 6452 5 Skin 0.19 protein_coding synonymous_variant LOW 981C>A Ile327Ile
M0030986 JKEKFJLF_00005 7388 5 Skin 0.19 protein_coding synonymous_variant LOW 1917A>C Ala639Ala
M0030987 JKEKFJLF_00005 7542 3 Skin 0.12 protein_coding missense_variant MODERATE 2071G>T Val691Phe
M0030988 JKEKFJLF_00006 7654 3 Skin 0.12 protein_coding synonymous_variant LOW 51C>A Gly17Gly
M0030989 JKEKFJLF_00007 10967 3 Skin 0.12 protein_coding upstream_gene_variant MODIFIER -1755G>C None
M0030990 JKEKFJLF_00003 3372 3 Skin 0.12 protein_coding missense_variant MODERATE 887G>A Arg296Gln
M0030991 JKEKFJLF_00003 3512 3 Skin 0.12 protein_coding synonymous_variant LOW 747C>T Ala249Ala
M0030992 JKEKFJLF_00003 3611 3 Skin 0.12 protein_coding synonymous_variant LOW 648G>A Pro216Pro
M0030993 JKEKFJLF_00003 3944 3 Skin 0.12 protein_coding synonymous_variant LOW 315C>A Leu105Leu
M0030994 JKEKFJLF_00005 5978 3 Skin 0.12 protein_coding synonymous_variant LOW 507G>A Gln169Gln
M0030995 JKEKFJLF_00005 5909 3 Skin 0.12 protein_coding synonymous_variant LOW 438C>A Ala146Ala
M0030996 JKEKFJLF_00010 11496 5 Skin 0.19 protein_coding synonymous_variant LOW 318C>G Val106Val
M0030997 JKEKFJLF_00004 5101 3 Skin 0.12 protein_coding missense_variant MODERATE 686A>T His229Leu
M0030998 JKEKFJLF_00004 5368 3 Skin 0.12 protein_coding splice_region_variant&stop_retained_variant LOW 953A>G Ter318Ter
M0030999 JKEKFJLF_00007 8982 3 Skin 0.12 protein_coding synonymous_variant LOW 231G>T Ser77Ser
M0031000 JKEKFJLF_00010 12219 3 Skin 0.12 protein_coding synonymous_variant LOW 1041C>G Leu347Leu
M0031001 JKEKFJLF_00010 11460 3 Skin 0.12 protein_coding synonymous_variant LOW 282C>G Ala94Ala
M0031002 JKEKFJLF_00010 11499 3 Skin 0.12 protein_coding synonymous_variant LOW 321C>T Gly107Gly
M0031003 JKEKFJLF_00010 11502 4 Skin 0.15 protein_coding synonymous_variant LOW 324C>T Tyr108Tyr
M0031004 JKEKFJLF_00010 11514 3 Skin 0.12 protein_coding synonymous_variant LOW 336C>G Gly112Gly
M0031005 JKEKFJLF_00010 11520 3 Skin 0.12 protein_coding synonymous_variant LOW 342C>T Asp114Asp
M0031006 JKEKFJLF_00010 11532 3 Skin 0.12 protein_coding synonymous_variant LOW 354C>G Ala118Ala
M0031007 JKEKFJLF_00010 11533 3 Skin 0.12 protein_coding missense_variant MODERATE 355T>C Cys119Arg
M0031008 JKEKFJLF_00010 11534 3 Skin 0.12 protein_coding missense_variant MODERATE 356G>C Cys119Ser
M0031009 JKEKFJLF_00010 11577 3 Skin 0.12 protein_coding synonymous_variant LOW 399G>C Ala133Ala
M0031010 JKEKFJLF_00010 11616 3 Skin 0.12 protein_coding synonymous_variant LOW 438C>T Asn146Asn






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term