Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2243
  Reference Plasmid   1111525849755503_bin.7__k141_326723
  Reference Plasmid Size   22390
  Reference Plasmid GC Content   0.72
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0031370 JCFDHJLF_00012 14623 5 Skin 0.18 protein_coding synonymous_variant LOW 453G>A Pro151Pro
M0031371 JCFDHJLF_00012 14638 3 Skin 0.11 protein_coding synonymous_variant LOW 468C>T Leu156Leu
M0031372 JCFDHJLF_00012 14647 6 Skin 0.21 protein_coding synonymous_variant LOW 477T>A Arg159Arg
M0031373 JCFDHJLF_00012 14713 4 Skin 0.14 protein_coding missense_variant MODERATE 543G>T Glu181Asp
M0031374 JCFDHJLF_00012 14716 8 Skin 0.29 protein_coding synonymous_variant LOW 546T>C Leu182Leu
M0031375 JCFDHJLF_00012 14717 8 Skin 0.29 protein_coding missense_variant MODERATE 547T>G Ser183Ala
M0031376 JCFDHJLF_00012 14801 11 Skin 0.39 protein_coding missense_variant MODERATE 631C>A His211Asn
M0031377 JCFDHJLF_00012 14833 11 Skin 0.39 protein_coding synonymous_variant LOW 663A>G Pro221Pro
M0031378 JCFDHJLF_00012 14879 10 Skin 0.36 protein_coding synonymous_variant LOW 709T>C Leu237Leu
M0031379 JCFDHJLF_00012 14896 8 Skin 0.29 protein_coding synonymous_variant LOW 726T>C Asp242Asp
M0031380 JCFDHJLF_00014 15861 4 Skin 0.14 protein_coding synonymous_variant LOW 255G>A Gln85Gln
M0031381 JCFDHJLF_00014 15874 6 Skin 0.21 protein_coding missense_variant MODERATE 242A>G Lys81Arg
M0031382 JCFDHJLF_00014 15879 6 Skin 0.21 protein_coding synonymous_variant LOW 237C>G Arg79Arg
M0031383 JCFDHJLF_00007 16177 10 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4164A>G None
M0031384 JCFDHJLF_00015 16447 3 Skin 0.11 protein_coding synonymous_variant LOW 219C>T Gly73Gly
M0031385 JCFDHJLF_00015 16450 3 Skin 0.11 protein_coding synonymous_variant LOW 222G>C Val74Val
M0031386 JCFDHJLF_00015 16471 6 Skin 0.21 protein_coding synonymous_variant LOW 243A>G Glu81Glu
M0031387 JCFDHJLF_00015 16501 6 Skin 0.21 protein_coding synonymous_variant LOW 273G>C Thr91Thr
M0031388 JCFDHJLF_00015 16612 5 Skin 0.18 protein_coding synonymous_variant LOW 384G>C Gly128Gly
M0031389 JCFDHJLF_00015 16849 5 Skin 0.18 protein_coding synonymous_variant LOW 621G>C Ala207Ala
M0031390 JCFDHJLF_00015 16875 6 Skin 0.21 protein_coding missense_variant MODERATE 647G>A Gly216Asp
M0031391 JCFDHJLF_00015 16993 5 Skin 0.18 protein_coding synonymous_variant LOW 765T>G Val255Val
M0031392 JCFDHJLF_00015 17011 5 Skin 0.18 protein_coding synonymous_variant LOW 783C>G Pro261Pro
M0031393 JCFDHJLF_00015 17089 4 Skin 0.14 protein_coding synonymous_variant LOW 861T>G Leu287Leu
M0031394 JCFDHJLF_00015 17120 4 Skin 0.14 protein_coding synonymous_variant LOW 892T>C Leu298Leu
M0031395 JCFDHJLF_00015 17204 3 Skin 0.11 protein_coding missense_variant MODERATE 976T>C Trp326Arg
M0031396 JCFDHJLF_00015 17318 8 Skin 0.29 protein_coding missense_variant MODERATE 1090T>C Ser364Pro
M0031397 JCFDHJLF_00015 17326 8 Skin 0.29 protein_coding missense_variant MODERATE 1098G>C Leu366Phe
M0031398 JCFDHJLF_00015 17344 8 Skin 0.29 protein_coding synonymous_variant LOW 1116G>C Thr372Thr
M0031399 JCFDHJLF_00001 85 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -44T>G None
M0031400 JCFDHJLF_00001 95 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -34T>A None
M0031401 JCFDHJLF_00001 111 7 Skin 0.25 protein_coding upstream_gene_variant MODIFIER -18G>A None
M0031402 JCFDHJLF_00001 137 7 Skin 0.25 protein_coding synonymous_variant LOW 9C>G Thr3Thr
M0031403 JCFDHJLF_00001 511 7 Skin 0.25 protein_coding missense_variant MODERATE 383G>C Ser128Thr
M0031404 JCFDHJLF_00001 620 5 Skin 0.18 protein_coding synonymous_variant LOW 492G>A Glu164Glu
M0031405 JCFDHJLF_00001 761 3 Skin 0.11 protein_coding synonymous_variant LOW 633G>A Glu211Glu
M0031406 JCFDHJLF_00001 968 5 Skin 0.18 protein_coding synonymous_variant LOW 840T>G Thr280Thr
M0031407 JCFDHJLF_00001 1022 5 Skin 0.18 protein_coding synonymous_variant LOW 894G>C Thr298Thr
M0031408 JCFDHJLF_00001 1037 4 Skin 0.14 protein_coding synonymous_variant LOW 909C>G Thr303Thr
M0031409 JCFDHJLF_00001 1115 4 Skin 0.14 protein_coding synonymous_variant LOW 987T>C Gly329Gly
M0031410 JCFDHJLF_00001 1205 5 Skin 0.18 protein_coding synonymous_variant LOW 1077C>T Tyr359Tyr
M0031411 JCFDHJLF_00001 1280 3 Skin 0.11 protein_coding missense_variant MODERATE 1152C>A Asp384Glu
M0031412 JCFDHJLF_00003 1316 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1008A>G None
M0031413 JCFDHJLF_00002 1377 4 Skin 0.14 protein_coding synonymous_variant LOW 618C>T Gly206Gly
M0031414 JCFDHJLF_00002 1769 6 Skin 0.21 protein_coding missense_variant MODERATE 226A>G Ile76Val
M0031415 JCFDHJLF_00002 1773 6 Skin 0.21 protein_coding synonymous_variant LOW 222T>G Leu74Leu
M0031416 JCFDHJLF_00002 1779 5 Skin 0.18 protein_coding synonymous_variant LOW 216G>C Gly72Gly
M0031417 JCFDHJLF_00002 1796 6 Skin 0.21 protein_coding synonymous_variant LOW 199T>C Leu67Leu
M0031418 JCFDHJLF_00002 1836 6 Skin 0.21 protein_coding synonymous_variant LOW 159A>C Ala53Ala
M0031419 JCFDHJLF_00002 1839 6 Skin 0.21 protein_coding synonymous_variant LOW 156G>C Ala52Ala
M0031420 JCFDHJLF_00002 1851 6 Skin 0.21 protein_coding synonymous_variant LOW 144C>G Val48Val
M0031421 JCFDHJLF_00002 1863 6 Skin 0.21 protein_coding synonymous_variant LOW 132T>C Arg44Arg
M0031422 JCFDHJLF_00002 1926 7 Skin 0.25 protein_coding synonymous_variant LOW 69T>C Ala23Ala
M0031423 JCFDHJLF_00002 2048 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -54T>A None
M0031424 JCFDHJLF_00003 2324 6 Skin 0.21 protein_coding start_lost HIGH 1A>G Met1?
M0031425 JCFDHJLF_00003 2342 4 Skin 0.14 protein_coding missense_variant MODERATE 19T>G Ser7Ala
M0031426 JCFDHJLF_00003 2387 6 Skin 0.21 protein_coding missense_variant MODERATE 64G>A Val22Ile
M0031427 JCFDHJLF_00003 2465 3 Skin 0.11 protein_coding missense_variant MODERATE 142A>G Asn48Asp
M0031428 JCFDHJLF_00003 2530 9 Skin 0.32 protein_coding synonymous_variant LOW 207C>G Leu69Leu
M0031429 JCFDHJLF_00004 2817 4 Skin 0.14 protein_coding synonymous_variant LOW 1821A>G Val607Val
M0031430 JCFDHJLF_00004 2938 6 Skin 0.21 protein_coding missense_variant MODERATE 1700T>C Leu567Ser
M0031431 JCFDHJLF_00004 3062 4 Skin 0.14 protein_coding missense_variant MODERATE 1576G>A Val526Ile
M0031432 JCFDHJLF_00004 3090 7 Skin 0.25 protein_coding synonymous_variant LOW 1548A>G Val516Val
M0031433 JCFDHJLF_00004 3113 5 Skin 0.18 protein_coding missense_variant MODERATE 1525G>A Val509Ile
M0031434 JCFDHJLF_00004 3237 3 Skin 0.11 protein_coding synonymous_variant LOW 1401C>T Leu467Leu
M0031435 JCFDHJLF_00001 215 6 Skin 0.21 protein_coding synonymous_variant LOW 87T>C Phe29Phe
M0031436 JCFDHJLF_00001 341 5 Skin 0.18 protein_coding synonymous_variant LOW 213T>C Gly71Gly
M0031437 JCFDHJLF_00001 371 5 Skin 0.18 protein_coding synonymous_variant LOW 243A>G Gly81Gly
M0031438 JCFDHJLF_00001 392 4 Skin 0.14 protein_coding synonymous_variant LOW 264C>T Asp88Asp
M0031439 JCFDHJLF_00002 1857 3 Skin 0.11 protein_coding synonymous_variant LOW 138T>C Ile46Ile
M0031440 JCFDHJLF_00003 2416 5 Skin 0.18 protein_coding synonymous_variant LOW 93A>G Gly31Gly
M0031441 JCFDHJLF_00003 2601 6 Skin 0.21 protein_coding missense_variant MODERATE 278C>G Ala93Gly
M0031442 JCFDHJLF_00003 2664 8 Skin 0.29 protein_coding missense_variant MODERATE 341G>A Arg114His
M0031443 JCFDHJLF_00003 2668 8 Skin 0.29 protein_coding synonymous_variant LOW 345A>C Gly115Gly
M0031444 JCFDHJLF_00004 3335 4 Skin 0.14 protein_coding synonymous_variant LOW 1303T>C Leu435Leu
M0031445 JCFDHJLF_00013 15443 10 Skin 0.36 protein_coding synonymous_variant LOW 165G>C Leu55Leu
M0031446 JCFDHJLF_00013 15470 9 Skin 0.32 protein_coding synonymous_variant LOW 138T>C His46His
M0031447 JCFDHJLF_00013 15508 11 Skin 0.39 protein_coding missense_variant MODERATE 100A>G Thr34Ala
M0031448 JCFDHJLF_00007 15630 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -3617G>A None
M0031449 JCFDHJLF_00014 15662 10 Skin 0.36 protein_coding missense_variant MODERATE 454G>A Gly152Ser
M0031450 JCFDHJLF_00014 15732 4 Skin 0.14 protein_coding synonymous_variant LOW 384A>C Ile128Ile
M0031451 JCFDHJLF_00007 16125 5 Skin 0.18 protein_coding upstream_gene_variant MODIFIER -4112C>A None
M0031452 JCFDHJLF_00015 16531 3 Skin 0.11 protein_coding synonymous_variant LOW 303T>G Ala101Ala
M0031453 JCFDHJLF_00015 16553 4 Skin 0.14 protein_coding synonymous_variant LOW 325T>C Leu109Leu
M0031454 JCFDHJLF_00015 16795 7 Skin 0.25 protein_coding synonymous_variant LOW 567A>T Gly189Gly
M0031455 JCFDHJLF_00015 18062 4 Skin 0.14 protein_coding missense_variant MODERATE 1834A>G Thr612Ala
M0031456 JCFDHJLF_00015 18151 5 Skin 0.18 protein_coding synonymous_variant LOW 1923A>G Glu641Glu
M0031457 JCFDHJLF_00015 18187 4 Skin 0.14 protein_coding synonymous_variant LOW 1959A>G Ala653Ala
M0031458 JCFDHJLF_00015 18412 4 Skin 0.14 protein_coding synonymous_variant LOW 2184A>G Gly728Gly
M0031459 JCFDHJLF_00015 18670 7 Skin 0.25 protein_coding synonymous_variant LOW 2442A>G Ala814Ala
M0031460 JCFDHJLF_00015 18713 6 Skin 0.21 protein_coding missense_variant MODERATE 2485A>G Thr829Ala
M0031461 JCFDHJLF_00015 18751 5 Skin 0.18 protein_coding missense_variant MODERATE 2523C>G His841Gln
M0031462 JCFDHJLF_00015 18810 3 Skin 0.11 protein_coding missense_variant MODERATE 2582C>T Ala861Val
M0031463 JCFDHJLF_00015 18848 6 Skin 0.21 protein_coding missense_variant MODERATE 2620T>C Cys874Arg
M0031464 JCFDHJLF_00015 18937 5 Skin 0.18 protein_coding synonymous_variant LOW 2709T>C Val903Val
M0031465 JCFDHJLF_00015 18994 6 Skin 0.21 protein_coding synonymous_variant LOW 2766T>C Ile922Ile
M0031466 JCFDHJLF_00015 19003 6 Skin 0.21 protein_coding synonymous_variant LOW 2775T>G Arg925Arg
M0031467 JCFDHJLF_00015 19016 6 Skin 0.21 protein_coding missense_variant MODERATE 2788G>A Ala930Thr
M0031468 JCFDHJLF_00015 19018 6 Skin 0.21 protein_coding synonymous_variant LOW 2790G>C Ala930Ala
M0031469 JCFDHJLF_00015 19039 6 Skin 0.21 protein_coding synonymous_variant LOW 2811T>C Asn937Asn
M0031470 JCFDHJLF_00015 19054 4 Skin 0.14 protein_coding synonymous_variant LOW 2826T>C Arg942Arg
M0031471 JCFDHJLF_00015 19081 4 Skin 0.14 protein_coding synonymous_variant LOW 2853T>C Ser951Ser
M0031472 JCFDHJLF_00015 19096 4 Skin 0.14 protein_coding synonymous_variant LOW 2868A>C Gly956Gly
M0031473 JCFDHJLF_00015 19102 4 Skin 0.14 protein_coding synonymous_variant LOW 2874C>G Gly958Gly
M0031474 JCFDHJLF_00015 19105 4 Skin 0.14 protein_coding synonymous_variant LOW 2877T>G Leu959Leu
M0031475 JCFDHJLF_00015 19108 4 Skin 0.14 protein_coding synonymous_variant LOW 2880C>G Ser960Ser
M0031476 JCFDHJLF_00015 19126 4 Skin 0.14 protein_coding synonymous_variant LOW 2898C>A Ala966Ala
M0031477 JCFDHJLF_00015 19137 4 Skin 0.14 protein_coding missense_variant MODERATE 2909T>A Leu970Gln
M0031478 JCFDHJLF_00015 19201 4 Skin 0.14 protein_coding synonymous_variant LOW 2973G>A Ala991Ala
M0031479 JCFDHJLF_00015 19234 3 Skin 0.11 protein_coding synonymous_variant LOW 3006C>T Gly1002Gly
M0031480 JCFDHJLF_00015 19307 3 Skin 0.11 protein_coding missense_variant MODERATE 3079A>T Thr1027Ser
M0031481 JCFDHJLF_00015 19308 3 Skin 0.11 protein_coding missense_variant MODERATE 3080C>G Thr1027Ser
M0031482 JCFDHJLF_00015 19390 5 Skin 0.18 protein_coding synonymous_variant LOW 3162A>G Ala1054Ala
M0031483 JCFDHJLF_00013 19645 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4038G>C None
M0031484 JCFDHJLF_00013 19652 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4045C>G None
M0031485 JCFDHJLF_00013 19671 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4064A>T None
M0031486 JCFDHJLF_00013 19697 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4090T>C None
M0031487 JCFDHJLF_00013 19698 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4091T>C None
M0031488 JCFDHJLF_00013 19748 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4141C>T None
M0031489 JCFDHJLF_00013 19831 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4224A>G None
M0031490 JCFDHJLF_00013 19868 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4261T>C None
M0031491 JCFDHJLF_00013 20198 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4591G>T None
M0031492 JCFDHJLF_00013 20203 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4596A>C None
M0031493 JCFDHJLF_00013 20205 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -4598C>T None
M0031494 JCFDHJLF_00017 20472 3 Skin 0.11 protein_coding synonymous_variant LOW 213T>C Tyr71Tyr
M0031495 JCFDHJLF_00017 20568 3 Skin 0.11 protein_coding synonymous_variant LOW 309C>G Leu103Leu
M0031496 JCFDHJLF_00017 20583 3 Skin 0.11 protein_coding synonymous_variant LOW 324G>C Ser108Ser
M0031497 JCFDHJLF_00017 20961 4 Skin 0.14 protein_coding synonymous_variant LOW 702T>C Gly234Gly
M0031498 JCFDHJLF_00017 21081 4 Skin 0.14 protein_coding synonymous_variant LOW 822C>G Arg274Arg
M0031499 JCFDHJLF_00017 21336 3 Skin 0.11 protein_coding synonymous_variant LOW 1077C>T Arg359Arg
M0031500 JCFDHJLF_00018 21507 4 Skin 0.14 protein_coding synonymous_variant LOW 75T>C Pro25Pro
M0031501 JCFDHJLF_00018 21564 4 Skin 0.14 protein_coding synonymous_variant LOW 132A>G Pro44Pro
M0031502 JCFDHJLF_00018 21609 4 Skin 0.14 protein_coding missense_variant MODERATE 177C>A Asp59Glu
M0031503 JCFDHJLF_00018 21963 4 Skin 0.14 protein_coding synonymous_variant LOW 531A>G Val177Val
M0031504 JCFDHJLF_00018 21964 4 Skin 0.14 protein_coding missense_variant MODERATE 532A>G Asn178Asp
M0031505 JCFDHJLF_00015 22004 4 Skin 0.14 protein_coding downstream_gene_variant MODIFIER *2371C>G None
M0031506 JCFDHJLF_00019 22085 3 Skin 0.11 protein_coding synonymous_variant LOW 273G>A Gly91Gly
M0031507 JCFDHJLF_00019 22195 5 Skin 0.18 protein_coding missense_variant MODERATE 163A>G Thr55Ala
M0031508 JCFDHJLF_00019 22217 5 Skin 0.18 protein_coding synonymous_variant LOW 141T>C Arg47Arg
M0031509 JCFDHJLF_00019 22317 4 Skin 0.14 protein_coding missense_variant MODERATE 41T>C Leu14Pro
M0031510 JCFDHJLF_00019 22329 3 Skin 0.11 protein_coding missense_variant MODERATE 29A>G Asn10Ser
M0031511 JCFDHJLF_00001 335 3 Skin 0.11 protein_coding synonymous_variant LOW 207G>C Ser69Ser
M0031512 JCFDHJLF_00001 896 3 Skin 0.11 protein_coding synonymous_variant LOW 768C>T Gly256Gly
M0031513 JCFDHJLF_00004 2835 3 Skin 0.11 protein_coding missense_variant MODERATE 1803G>T Glu601Asp
M0031514 JCFDHJLF_00004 2924 3 Skin 0.11 protein_coding stop_gained HIGH 1714G>T Glu572*
M0031515 JCFDHJLF_00004 3502 3 Skin 0.11 protein_coding missense_variant MODERATE 1136C>T Ala379Val
M0031516 JCFDHJLF_00004 4362 3 Skin 0.11 protein_coding synonymous_variant LOW 276T>C Phe92Phe
M0031517 JCFDHJLF_00019 22363 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -6G>A None
M0031518 JCFDHJLF_00007 11514 5 Skin 0.18 protein_coding missense_variant MODERATE 500A>C Glu167Ala
M0031519 JCFDHJLF_00007 11750 5 Skin 0.18 protein_coding synonymous_variant LOW 264T>C Val88Val
M0031520 JCFDHJLF_00007 11784 5 Skin 0.18 protein_coding missense_variant MODERATE 230C>T Pro77Leu
M0031521 JCFDHJLF_00008 12336 5 Skin 0.18 protein_coding missense_variant MODERATE 154C>G Pro52Ala
M0031522 JCFDHJLF_00008 12343 9 Skin 0.32 protein_coding missense_variant MODERATE 161C>A Ala54Asp
M0031523 JCFDHJLF_00008 12344 5 Skin 0.18 protein_coding synonymous_variant LOW 162C>T Ala54Ala
M0031524 JCFDHJLF_00008 12385 5 Skin 0.18 protein_coding missense_variant MODERATE 203A>T Gln68Leu
M0031525 JCFDHJLF_00008 12589 9 Skin 0.32 protein_coding missense_variant MODERATE 407C>T Pro136Leu
M0031526 JCFDHJLF_00009 12747 8 Skin 0.29 protein_coding synonymous_variant LOW 84A>G Val28Val
M0031527 JCFDHJLF_00009 12924 7 Skin 0.25 protein_coding synonymous_variant LOW 261G>C Arg87Arg
M0031528 JCFDHJLF_00009 12954 6 Skin 0.21 protein_coding synonymous_variant LOW 291G>C Ala97Ala
M0031529 JCFDHJLF_00010 13413 8 Skin 0.29 protein_coding synonymous_variant LOW 102A>G Leu34Leu
M0031530 JCFDHJLF_00010 13443 8 Skin 0.29 protein_coding synonymous_variant LOW 132T>C Thr44Thr
M0031531 JCFDHJLF_00010 13627 6 Skin 0.21 protein_coding synonymous_variant LOW 316T>C Leu106Leu
M0031532 JCFDHJLF_00010 13678 7 Skin 0.25 protein_coding missense_variant MODERATE 367C>G Arg123Gly
M0031533 JCFDHJLF_00010 13682 7 Skin 0.25 protein_coding missense_variant MODERATE 371G>A Arg124Gln
M0031534 JCFDHJLF_00010 13748 8 Skin 0.29 protein_coding missense_variant MODERATE 437C>T Ala146Val
M0031535 JCFDHJLF_00011 13896 7 Skin 0.25 protein_coding missense_variant MODERATE 121T>C Ser41Pro
M0031536 JCFDHJLF_00011 13914 3 Skin 0.11 protein_coding missense_variant MODERATE 139C>A Leu47Met
M0031537 JCFDHJLF_00011 14138 3 Skin 0.11 protein_coding synonymous_variant LOW 363G>A Leu121Leu
M0031538 JCFDHJLF_00012 14188 10 Skin 0.36 protein_coding synonymous_variant LOW 18A>C Arg6Arg
M0031539 JCFDHJLF_00012 14209 10 Skin 0.36 protein_coding synonymous_variant LOW 39T>C Val13Val
M0031540 JCFDHJLF_00012 14285 9 Skin 0.32 protein_coding missense_variant MODERATE 115A>G Thr39Ala
M0031541 JCFDHJLF_00012 14391 7 Skin 0.25 protein_coding missense_variant MODERATE 221C>G Ala74Gly
M0031542 JCFDHJLF_00012 14418 9 Skin 0.32 protein_coding missense_variant MODERATE 248T>C Val83Ala
M0031543 JCFDHJLF_00012 14505 9 Skin 0.32 protein_coding missense_variant MODERATE 335T>C Leu112Pro
M0031544 JCFDHJLF_00013 15413 7 Skin 0.25 protein_coding synonymous_variant LOW 195C>T Asp65Asp
M0031545 JCFDHJLF_00007 15639 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -3626C>G None
M0031546 JCFDHJLF_00014 16097 8 Skin 0.29 protein_coding missense_variant MODERATE 19T>C Ser7Pro
M0031547 JCFDHJLF_00007 16164 4 Skin 0.14 protein_coding upstream_gene_variant MODIFIER -4151A>G None
M0031548 JCFDHJLF_00015 16264 6 Skin 0.21 protein_coding synonymous_variant LOW 36C>T Asp12Asp
M0031549 JCFDHJLF_00015 16288 7 Skin 0.25 protein_coding synonymous_variant LOW 60T>C Asp20Asp
M0031550 JCFDHJLF_00015 17281 4 Skin 0.14 protein_coding synonymous_variant LOW 1053G>A Glu351Glu
M0031551 JCFDHJLF_00015 17371 4 Skin 0.14 protein_coding synonymous_variant LOW 1143C>A Arg381Arg
M0031552 JCFDHJLF_00015 17463 4 Skin 0.14 protein_coding missense_variant MODERATE 1235T>A Ile412Asn
M0031553 JCFDHJLF_00015 17497 4 Skin 0.14 protein_coding synonymous_variant LOW 1269C>T Gly423Gly
M0031554 JCFDHJLF_00017 21183 3 Skin 0.11 protein_coding synonymous_variant LOW 924C>G Ala308Ala
M0031555 JCFDHJLF_00011 14123 5 Skin 0.18 protein_coding synonymous_variant LOW 348T>C Leu116Leu
M0031556 JCFDHJLF_00011 14129 5 Skin 0.18 protein_coding synonymous_variant LOW 354T>C Gly118Gly
M0031557 JCFDHJLF_00011 14139 3 Skin 0.11 protein_coding synonymous_variant LOW 364A>C Arg122Arg
M0031558 JCFDHJLF_00012 14499 7 Skin 0.25 protein_coding missense_variant MODERATE 329C>T Pro110Leu
M0031559 JCFDHJLF_00012 14502 4 Skin 0.14 protein_coding missense_variant MODERATE 332C>A Thr111Lys
M0031560 JCFDHJLF_00012 14506 4 Skin 0.14 protein_coding synonymous_variant LOW 336A>C Leu112Leu
M0031561 JCFDHJLF_00012 14560 6 Skin 0.21 protein_coding synonymous_variant LOW 390T>C Pro130Pro
M0031562 JCFDHJLF_00012 14585 4 Skin 0.14 protein_coding missense_variant MODERATE 415A>G Thr139Ala
M0031563 JCFDHJLF_00012 14791 9 Skin 0.32 protein_coding synonymous_variant LOW 621G>C Gly207Gly
M0031564 JCFDHJLF_00015 16429 3 Skin 0.11 protein_coding synonymous_variant LOW 201A>C Gly67Gly
M0031565 JCFDHJLF_00015 16465 4 Skin 0.14 protein_coding synonymous_variant LOW 237C>G Leu79Leu
M0031566 JCFDHJLF_00015 19177 3 Skin 0.11 protein_coding synonymous_variant LOW 2949G>A Ala983Ala
M0031567 JCFDHJLF_00007 11964 3 Skin 0.11 protein_coding missense_variant MODERATE 50C>T Pro17Leu
M0031568 JCFDHJLF_00007 11998 3 Skin 0.11 protein_coding missense_variant MODERATE 16A>C Thr6Pro
M0031569 JCFDHJLF_00006 12029 3 Skin 0.11 protein_coding upstream_gene_variant MODIFIER -1482C>T None
M0031570 JCFDHJLF_00011 14033 5 Skin 0.18 protein_coding synonymous_variant LOW 258A>G Ala86Ala
M0031571 JCFDHJLF_00011 14052 3 Skin 0.11 protein_coding synonymous_variant LOW 277C>T Leu93Leu
M0031572 JCFDHJLF_00015 16798 3 Skin 0.11 protein_coding synonymous_variant LOW 570C>T Tyr190Tyr
M0031573 JCFDHJLF_00012 14192 4 Skin 0.14 protein_coding missense_variant MODERATE 22A>G Thr8Ala
M0031574 JCFDHJLF_00012 14227 3 Skin 0.11 protein_coding synonymous_variant LOW 57A>G Ala19Ala
M0031575 JCFDHJLF_00012 14338 4 Skin 0.14 protein_coding synonymous_variant LOW 168G>C Val56Val
M0031576 JCFDHJLF_00009 13209 5 Skin 0.18 protein_coding synonymous_variant LOW 546T>C Ala182Ala
M0031577 JCFDHJLF_00007 10739 3 Skin 0.11 protein_coding synonymous_variant LOW 1275C>A Ala425Ala
M0031578 JCFDHJLF_00007 10979 3 Skin 0.11 protein_coding synonymous_variant LOW 1035T>G Thr345Thr
M0031579 JCFDHJLF_00008 12245 3 Skin 0.11 protein_coding synonymous_variant LOW 63G>C Ala21Ala
M0031580 JCFDHJLF_00008 12491 3 Skin 0.11 protein_coding synonymous_variant LOW 309A>G Lys103Lys
M0031581 JCFDHJLF_00009 12786 4 Skin 0.14 protein_coding synonymous_variant LOW 123T>G Leu41Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term