Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2250
  Reference Plasmid   1111525849755644_bin.90__k141_289360
  Reference Plasmid Size   10683
  Reference Plasmid GC Content   0.60
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0118585 OIJLDOLO_00001 79 3 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *300G>T None
M0118586 OIJLDOLO_00001 236 4 Oral 0.80 protein_coding downstream_gene_variant MODIFIER *143C>T None
M0118587 OIJLDOLO_00001 267 4 Oral 0.80 protein_coding downstream_gene_variant MODIFIER *112T>C None
M0118588 OIJLDOLO_00001 484 3 Oral 0.60 protein_coding synonymous_variant LOW 1002T>C Ala334Ala
M0118589 OIJLDOLO_00001 523 4 Oral 0.80 protein_coding synonymous_variant LOW 963G>C Gly321Gly
M0118590 OIJLDOLO_00001 652 3 Oral 0.60 protein_coding synonymous_variant LOW 834G>A Pro278Pro
M0118591 OIJLDOLO_00001 781 4 Oral 0.80 protein_coding synonymous_variant LOW 705A>G Ala235Ala
M0118592 OIJLDOLO_00001 871 4 Oral 0.80 protein_coding synonymous_variant LOW 615T>C Ser205Ser
M0118593 OIJLDOLO_00001 997 3 Oral 0.60 protein_coding synonymous_variant LOW 489T>C Ala163Ala
M0118594 OIJLDOLO_00001 1132 3 Oral 0.60 protein_coding synonymous_variant LOW 354C>T Asp118Asp
M0118595 OIJLDOLO_00001 1376 4 Oral 0.80 protein_coding missense_variant MODERATE 110T>C Val37Ala
M0118596 OIJLDOLO_00001 1387 4 Oral 0.80 protein_coding synonymous_variant LOW 99A>G Gln33Gln
M0118597 OIJLDOLO_00002 1657 3 Oral 0.60 protein_coding synonymous_variant LOW 1785A>G Ala595Ala
M0118598 OIJLDOLO_00002 1687 3 Oral 0.60 protein_coding synonymous_variant LOW 1755A>G Val585Val
M0118599 OIJLDOLO_00002 2107 4 Oral 0.80 protein_coding synonymous_variant LOW 1335T>C Gly445Gly
M0118600 OIJLDOLO_00002 2262 3 Oral 0.60 protein_coding synonymous_variant LOW 1180T>C Leu394Leu
M0118601 OIJLDOLO_00002 2314 3 Oral 0.60 protein_coding synonymous_variant LOW 1128G>A Thr376Thr
M0118602 OIJLDOLO_00002 2437 3 Oral 0.60 protein_coding synonymous_variant LOW 1005T>C Gly335Gly
M0118603 OIJLDOLO_00002 2452 4 Oral 0.80 protein_coding synonymous_variant LOW 990T>C Gly330Gly
M0118604 OIJLDOLO_00002 2518 4 Oral 0.80 protein_coding synonymous_variant LOW 924T>C Cys308Cys
M0118605 OIJLDOLO_00002 2674 4 Oral 0.80 protein_coding synonymous_variant LOW 768T>C Arg256Arg
M0118606 OIJLDOLO_00002 2781 4 Oral 0.80 protein_coding missense_variant MODERATE 661G>A Val221Ile
M0118607 OIJLDOLO_00002 2887 3 Oral 0.60 protein_coding synonymous_variant LOW 555C>T Arg185Arg
M0118608 OIJLDOLO_00002 2932 3 Oral 0.60 protein_coding synonymous_variant LOW 510T>C Pro170Pro
M0118609 OIJLDOLO_00001 3615 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2130A>T None
M0118610 OIJLDOLO_00001 3640 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2155T>C None
M0118611 OIJLDOLO_00001 3683 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2198C>T None
M0118612 OIJLDOLO_00001 3708 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2223T>C None
M0118613 OIJLDOLO_00001 3771 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2286T>C None
M0118614 OIJLDOLO_00001 3823 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2338A>G None
M0118615 OIJLDOLO_00001 3959 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2474T>C None
M0118616 OIJLDOLO_00001 3984 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2499G>A None
M0118617 OIJLDOLO_00001 3994 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2509T>C None
M0118618 OIJLDOLO_00001 4036 3 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -2551C>T None
M0118619 OIJLDOLO_00001 4150 4 Oral 0.80 protein_coding upstream_gene_variant MODIFIER -2665T>C None
M0118620 OIJLDOLO_00003 4304 4 Oral 0.80 protein_coding missense_variant MODERATE 1607G>A Cys536Tyr
M0118621 OIJLDOLO_00003 4359 4 Oral 0.80 protein_coding synonymous_variant LOW 1552A>C Arg518Arg
M0118622 OIJLDOLO_00003 4393 4 Oral 0.80 protein_coding synonymous_variant LOW 1518T>C Asp506Asp
M0118623 OIJLDOLO_00003 4417 4 Oral 0.80 protein_coding synonymous_variant LOW 1494A>G Ala498Ala
M0118624 OIJLDOLO_00003 4595 4 Oral 0.80 protein_coding missense_variant MODERATE 1316T>C Leu439Ser
M0118625 OIJLDOLO_00003 4656 3 Oral 0.60 protein_coding missense_variant MODERATE 1255G>A Ala419Thr
M0118626 OIJLDOLO_00003 4666 4 Oral 0.80 protein_coding synonymous_variant LOW 1245T>A Thr415Thr
M0118627 OIJLDOLO_00003 4677 3 Oral 0.60 protein_coding missense_variant MODERATE 1234G>T Ala412Ser
M0118628 OIJLDOLO_00003 4683 3 Oral 0.60 protein_coding missense_variant MODERATE 1228G>A Ala410Thr
M0118629 OIJLDOLO_00003 4705 3 Oral 0.60 protein_coding synonymous_variant LOW 1206G>A Glu402Glu
M0118630 OIJLDOLO_00003 4715 4 Oral 0.80 protein_coding missense_variant MODERATE 1196A>G Asp399Gly
M0118631 OIJLDOLO_00003 4847 4 Oral 0.80 protein_coding missense_variant MODERATE 1064T>C Val355Ala
M0118632 OIJLDOLO_00003 5059 4 Oral 0.80 protein_coding synonymous_variant LOW 852T>C Arg284Arg
M0118633 OIJLDOLO_00003 5149 4 Oral 0.80 protein_coding synonymous_variant LOW 762C>T Val254Val
M0118634 OIJLDOLO_00003 5170 4 Oral 0.80 protein_coding missense_variant MODERATE 741A>C Glu247Asp
M0118635 OIJLDOLO_00003 5171 3 Oral 0.60 protein_coding missense_variant MODERATE 740A>G Glu247Gly
M0118636 OIJLDOLO_00003 5192 3 Oral 0.60 protein_coding missense_variant MODERATE 719G>C Gly240Ala
M0118637 OIJLDOLO_00003 5200 4 Oral 0.80 protein_coding synonymous_variant LOW 711T>C Cys237Cys
M0118638 OIJLDOLO_00003 5253 4 Oral 0.80 protein_coding missense_variant MODERATE 658A>G Met220Val
M0118639 OIJLDOLO_00003 5416 4 Oral 0.80 protein_coding synonymous_variant LOW 495A>G Pro165Pro
M0118640 OIJLDOLO_00003 5477 3 Oral 0.60 protein_coding missense_variant MODERATE 434T>G Val145Gly
M0118641 OIJLDOLO_00003 5510 3 Oral 0.60 protein_coding missense_variant MODERATE 401C>T Ala134Val
M0118642 OIJLDOLO_00003 5642 4 Oral 0.80 protein_coding missense_variant MODERATE 269A>G His90Arg
M0118643 OIJLDOLO_00003 5650 4 Oral 0.80 protein_coding synonymous_variant LOW 261A>G Thr87Thr
M0118644 OIJLDOLO_00003 5659 4 Oral 0.80 protein_coding synonymous_variant LOW 252G>C Thr84Thr
M0118645 OIJLDOLO_00003 5769 4 Oral 0.80 protein_coding missense_variant MODERATE 142A>G Thr48Ala
M0118646 OIJLDOLO_00003 5845 4 Oral 0.80 protein_coding synonymous_variant LOW 66A>G Leu22Leu
M0118647 OIJLDOLO_00003 5861 4 Oral 0.80 protein_coding missense_variant MODERATE 50C>T Ala17Val
M0118648 OIJLDOLO_00004 6063 4 Oral 0.80 protein_coding missense_variant MODERATE 1355G>A Arg452Gln
M0118649 OIJLDOLO_00004 6076 4 Oral 0.80 protein_coding missense_variant MODERATE 1342A>G Thr448Ala
M0118650 OIJLDOLO_00004 6122 4 Oral 0.80 protein_coding synonymous_variant LOW 1296T>C Ile432Ile
M0118651 OIJLDOLO_00004 6124 3 Oral 0.60 protein_coding missense_variant MODERATE 1294A>G Ile432Val
M0118652 OIJLDOLO_00004 6129 3 Oral 0.60 protein_coding missense_variant MODERATE 1289G>A Gly430Asp
M0118653 OIJLDOLO_00004 6264 4 Oral 0.80 protein_coding missense_variant MODERATE 1154A>G His385Arg
M0118654 OIJLDOLO_00004 6420 4 Oral 0.80 protein_coding missense_variant MODERATE 998A>G His333Arg
M0118655 OIJLDOLO_00004 6617 3 Oral 0.60 protein_coding synonymous_variant LOW 801T>C Gly267Gly
M0118656 OIJLDOLO_00004 6932 3 Oral 0.60 protein_coding synonymous_variant LOW 486T>C Ala162Ala
M0118657 OIJLDOLO_00004 6940 3 Oral 0.60 protein_coding missense_variant MODERATE 478A>G Ile160Val
M0118658 OIJLDOLO_00004 7073 3 Oral 0.60 protein_coding synonymous_variant LOW 345A>G Arg115Arg
M0118659 OIJLDOLO_00004 7401 3 Oral 0.60 protein_coding missense_variant MODERATE 17A>C His6Pro
M0118660 OIJLDOLO_00005 7595 3 Oral 0.60 protein_coding synonymous_variant LOW 1191A>G Arg397Arg
M0118661 OIJLDOLO_00005 7643 3 Oral 0.60 protein_coding synonymous_variant LOW 1143T>C Leu381Leu
M0118662 OIJLDOLO_00005 7679 3 Oral 0.60 protein_coding synonymous_variant LOW 1107G>A Lys369Lys
M0118663 OIJLDOLO_00005 7715 3 Oral 0.60 protein_coding synonymous_variant LOW 1071G>T Arg357Arg
M0118664 OIJLDOLO_00005 7794 3 Oral 0.60 protein_coding missense_variant MODERATE 992A>G His331Arg
M0118665 OIJLDOLO_00005 7812 3 Oral 0.60 protein_coding missense_variant MODERATE 974A>G Lys325Arg
M0118666 OIJLDOLO_00005 7813 3 Oral 0.60 protein_coding missense_variant MODERATE 973A>G Lys325Glu
M0118667 OIJLDOLO_00005 7898 3 Oral 0.60 protein_coding synonymous_variant LOW 888C>T Gly296Gly
M0118668 OIJLDOLO_00005 7916 3 Oral 0.60 protein_coding synonymous_variant LOW 870A>G Ser290Ser
M0118669 OIJLDOLO_00005 7932 3 Oral 0.60 protein_coding missense_variant MODERATE 854G>A Gly285Asp
M0118670 OIJLDOLO_00005 7976 3 Oral 0.60 protein_coding synonymous_variant LOW 810T>C Cys270Cys
M0118671 OIJLDOLO_00005 7988 3 Oral 0.60 protein_coding synonymous_variant LOW 798T>C Asp266Asp
M0118672 OIJLDOLO_00005 7990 3 Oral 0.60 protein_coding missense_variant MODERATE 796G>A Asp266Asn
M0118673 OIJLDOLO_00005 8036 3 Oral 0.60 protein_coding synonymous_variant LOW 750T>C Phe250Phe
M0118674 OIJLDOLO_00001 245 3 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *134T>G None
M0118675 OIJLDOLO_00001 418 3 Oral 0.60 protein_coding synonymous_variant LOW 1068T>C Ala356Ala
M0118676 OIJLDOLO_00001 511 3 Oral 0.60 protein_coding synonymous_variant LOW 975T>C Arg325Arg
M0118677 OIJLDOLO_00002 1663 3 Oral 0.60 protein_coding synonymous_variant LOW 1779A>G Glu593Glu
M0118678 OIJLDOLO_00003 4400 3 Oral 0.60 protein_coding missense_variant MODERATE 1511T>C Val504Ala
M0118679 OIJLDOLO_00003 4858 3 Oral 0.60 protein_coding missense_variant MODERATE 1053G>C Glu351Asp
M0118680 OIJLDOLO_00003 5006 3 Oral 0.60 protein_coding missense_variant MODERATE 905G>A Arg302His
M0118681 OIJLDOLO_00003 5289 3 Oral 0.60 protein_coding missense_variant MODERATE 622A>G Ser208Gly
M0118682 OIJLDOLO_00003 5305 3 Oral 0.60 protein_coding synonymous_variant LOW 606A>C Ala202Ala
M0118683 OIJLDOLO_00003 5614 3 Oral 0.60 protein_coding synonymous_variant LOW 297T>C Arg99Arg
M0118684 OIJLDOLO_00003 5653 3 Oral 0.60 protein_coding synonymous_variant LOW 258C>T Gly86Gly
M0118685 OIJLDOLO_00004 6140 3 Oral 0.60 protein_coding synonymous_variant LOW 1278T>G Leu426Leu
M0118686 OIJLDOLO_00004 6175 3 Oral 0.60 protein_coding missense_variant MODERATE 1243G>C Val415Leu
M0118687 OIJLDOLO_00004 6204 3 Oral 0.60 protein_coding missense_variant MODERATE 1214G>A Gly405Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term