Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2275
  Reference Plasmid   1111525849758776_bin.45__k141_80369
  Reference Plasmid Size   25666
  Reference Plasmid GC Content   0.45
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0032947 CLFKKBPE_00004 5369 4 Skin 0.36 protein_coding synonymous_variant LOW 2358T>G Pro786Pro
M0032948 CLFKKBPE_00004 5537 5 Skin 0.45 protein_coding synonymous_variant LOW 2190C>T Asp730Asp
M0032949 CLFKKBPE_00004 5591 3 Skin 0.27 protein_coding synonymous_variant LOW 2136G>A Val712Val
M0032950 CLFKKBPE_00004 5600 5 Skin 0.45 protein_coding synonymous_variant LOW 2127A>G Val709Val
M0032951 CLFKKBPE_00004 5615 3 Skin 0.27 protein_coding synonymous_variant LOW 2112T>C Pro704Pro
M0032952 CLFKKBPE_00004 5633 5 Skin 0.45 protein_coding synonymous_variant LOW 2094C>A Gly698Gly
M0032953 CLFKKBPE_00004 5636 3 Skin 0.27 protein_coding synonymous_variant LOW 2091C>G Val697Val
M0032954 CLFKKBPE_00004 5639 5 Skin 0.45 protein_coding synonymous_variant LOW 2088C>T Pro696Pro
M0032955 CLFKKBPE_00004 5642 5 Skin 0.45 protein_coding synonymous_variant LOW 2085G>A Ser695Ser
M0032956 CLFKKBPE_00004 5678 5 Skin 0.45 protein_coding synonymous_variant LOW 2049C>T Gly683Gly
M0032957 CLFKKBPE_00004 5750 4 Skin 0.36 protein_coding synonymous_variant LOW 1977C>T Ile659Ile
M0032958 CLFKKBPE_00004 5822 5 Skin 0.45 protein_coding synonymous_variant LOW 1905C>T Gly635Gly
M0032959 CLFKKBPE_00004 5897 5 Skin 0.45 protein_coding synonymous_variant LOW 1830A>G Glu610Glu
M0032960 CLFKKBPE_00004 5935 5 Skin 0.45 protein_coding synonymous_variant LOW 1792T>C Leu598Leu
M0032961 CLFKKBPE_00004 5975 5 Skin 0.45 protein_coding synonymous_variant LOW 1752A>G Leu584Leu
M0032962 CLFKKBPE_00004 5984 5 Skin 0.45 protein_coding synonymous_variant LOW 1743A>G Pro581Pro
M0032963 CLFKKBPE_00004 6050 4 Skin 0.36 protein_coding synonymous_variant LOW 1677T>C Gly559Gly
M0032964 CLFKKBPE_00004 6062 3 Skin 0.27 protein_coding synonymous_variant LOW 1665G>C Thr555Thr
M0032965 CLFKKBPE_00004 6068 4 Skin 0.36 protein_coding synonymous_variant LOW 1659G>A Pro553Pro
M0032966 CLFKKBPE_00004 6104 3 Skin 0.27 protein_coding synonymous_variant LOW 1623T>C Gly541Gly
M0032967 CLFKKBPE_00004 6134 5 Skin 0.45 protein_coding synonymous_variant LOW 1593T>C Gly531Gly
M0032968 CLFKKBPE_00004 6173 4 Skin 0.36 protein_coding synonymous_variant LOW 1554C>T Gly518Gly
M0032969 CLFKKBPE_00004 6218 5 Skin 0.45 protein_coding synonymous_variant LOW 1509T>C Asp503Asp
M0032970 CLFKKBPE_00004 6260 5 Skin 0.45 protein_coding synonymous_variant LOW 1467G>T Leu489Leu
M0032971 CLFKKBPE_00004 6284 5 Skin 0.45 protein_coding synonymous_variant LOW 1443T>C Leu481Leu
M0032972 CLFKKBPE_00004 6290 4 Skin 0.36 protein_coding synonymous_variant LOW 1437T>C Val479Val
M0032973 CLFKKBPE_00004 6362 4 Skin 0.36 protein_coding synonymous_variant LOW 1365T>C Val455Val
M0032974 CLFKKBPE_00004 6380 4 Skin 0.36 protein_coding synonymous_variant LOW 1347C>T Asp449Asp
M0032975 CLFKKBPE_00004 6443 3 Skin 0.27 protein_coding synonymous_variant LOW 1284G>A Gly428Gly
M0032976 CLFKKBPE_00004 6455 5 Skin 0.45 protein_coding synonymous_variant LOW 1272T>C Ile424Ile
M0032977 CLFKKBPE_00004 6458 3 Skin 0.27 protein_coding synonymous_variant LOW 1269C>T Ala423Ala
M0032978 CLFKKBPE_00004 6488 4 Skin 0.36 protein_coding synonymous_variant LOW 1239G>A Val413Val
M0032979 CLFKKBPE_00004 6506 5 Skin 0.45 protein_coding synonymous_variant LOW 1221C>G Thr407Thr
M0032980 CLFKKBPE_00004 6533 3 Skin 0.27 protein_coding synonymous_variant LOW 1194C>T Gly398Gly
M0032981 CLFKKBPE_00004 6581 4 Skin 0.36 protein_coding synonymous_variant LOW 1146T>C Val382Val
M0032982 CLFKKBPE_00004 6584 3 Skin 0.27 protein_coding synonymous_variant LOW 1143T>C Ile381Ile
M0032983 CLFKKBPE_00004 6593 3 Skin 0.27 protein_coding synonymous_variant LOW 1134T>G Gly378Gly
M0032984 CLFKKBPE_00004 6614 3 Skin 0.27 protein_coding synonymous_variant LOW 1113G>T Thr371Thr
M0032985 CLFKKBPE_00004 6716 6 Skin 0.55 protein_coding synonymous_variant LOW 1011T>C Val337Val
M0032986 CLFKKBPE_00004 6746 5 Skin 0.45 protein_coding synonymous_variant LOW 981A>G Leu327Leu
M0032987 CLFKKBPE_00004 6758 6 Skin 0.55 protein_coding synonymous_variant LOW 969T>C Arg323Arg
M0032988 CLFKKBPE_00004 6785 4 Skin 0.36 protein_coding synonymous_variant LOW 942C>G Arg314Arg
M0032989 CLFKKBPE_00004 6812 3 Skin 0.27 protein_coding synonymous_variant LOW 915T>C Ser305Ser
M0032990 CLFKKBPE_00004 6879 3 Skin 0.27 protein_coding missense_variant MODERATE 848A>G Lys283Arg
M0032991 CLFKKBPE_00004 7022 5 Skin 0.45 protein_coding synonymous_variant LOW 705C>T Thr235Thr
M0032992 CLFKKBPE_00004 7052 6 Skin 0.55 protein_coding synonymous_variant LOW 675C>G Ala225Ala
M0032993 CLFKKBPE_00004 7079 6 Skin 0.55 protein_coding synonymous_variant LOW 648C>T Asp216Asp
M0032994 CLFKKBPE_00004 7124 5 Skin 0.45 protein_coding synonymous_variant LOW 603T>G Arg201Arg
M0032995 CLFKKBPE_00004 7184 3 Skin 0.27 protein_coding synonymous_variant LOW 543G>A Ala181Ala
M0032996 CLFKKBPE_00004 7196 3 Skin 0.27 protein_coding synonymous_variant LOW 531C>T Thr177Thr
M0032997 CLFKKBPE_00004 7199 4 Skin 0.36 protein_coding synonymous_variant LOW 528T>A Gly176Gly
M0032998 CLFKKBPE_00004 7208 4 Skin 0.36 protein_coding synonymous_variant LOW 519G>A Glu173Glu
M0032999 CLFKKBPE_00004 7217 5 Skin 0.45 protein_coding synonymous_variant LOW 510T>C Asp170Asp
M0033000 CLFKKBPE_00004 7262 4 Skin 0.36 protein_coding synonymous_variant LOW 465C>G Val155Val
M0033001 CLFKKBPE_00004 7278 4 Skin 0.36 protein_coding missense_variant MODERATE 449A>G His150Arg
M0033002 CLFKKBPE_00004 7289 4 Skin 0.36 protein_coding synonymous_variant LOW 438C>G Thr146Thr
M0033003 CLFKKBPE_00004 7294 4 Skin 0.36 protein_coding missense_variant MODERATE 433C>A Leu145Ile
M0033004 CLFKKBPE_00004 7303 4 Skin 0.36 protein_coding missense_variant MODERATE 424C>G His142Asp
M0033005 CLFKKBPE_00004 7318 6 Skin 0.55 protein_coding missense_variant MODERATE 409T>G Ser137Ala
M0033006 CLFKKBPE_00004 7321 5 Skin 0.45 protein_coding missense_variant MODERATE 406C>A Gln136Lys
M0033007 CLFKKBPE_00004 7325 6 Skin 0.55 protein_coding synonymous_variant LOW 402A>G Thr134Thr
M0033008 CLFKKBPE_00004 7332 4 Skin 0.36 protein_coding missense_variant MODERATE 395C>T Ser132Leu
M0033009 CLFKKBPE_00004 7346 6 Skin 0.55 protein_coding missense_variant MODERATE 381A>C Lys127Asn
M0033010 CLFKKBPE_00004 7373 6 Skin 0.55 protein_coding synonymous_variant LOW 354T>C Arg118Arg
M0033011 CLFKKBPE_00004 7415 4 Skin 0.36 protein_coding synonymous_variant LOW 312A>G Leu104Leu
M0033012 CLFKKBPE_00004 7424 5 Skin 0.45 protein_coding synonymous_variant LOW 303T>G Leu101Leu
M0033013 CLFKKBPE_00004 7436 6 Skin 0.55 protein_coding synonymous_variant LOW 291T>C Leu97Leu
M0033014 CLFKKBPE_00004 7468 6 Skin 0.55 protein_coding synonymous_variant LOW 259T>C Leu87Leu
M0033015 CLFKKBPE_00004 7478 6 Skin 0.55 protein_coding synonymous_variant LOW 249A>G Ala83Ala
M0033016 CLFKKBPE_00004 7532 6 Skin 0.55 protein_coding synonymous_variant LOW 195G>A Lys65Lys
M0033017 CLFKKBPE_00004 7544 6 Skin 0.55 protein_coding synonymous_variant LOW 183A>G Ala61Ala
M0033018 CLFKKBPE_00004 7550 6 Skin 0.55 protein_coding synonymous_variant LOW 177C>T Ala59Ala
M0033019 CLFKKBPE_00004 7568 5 Skin 0.45 protein_coding synonymous_variant LOW 159C>A Ala53Ala
M0033020 CLFKKBPE_00004 7723 6 Skin 0.55 protein_coding missense_variant MODERATE 4G>A Ala2Thr
M0033021 CLFKKBPE_00006 10309 3 Skin 0.27 protein_coding missense_variant MODERATE 1045G>C Val349Leu
M0033022 CLFKKBPE_00004 10339 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2613G>A None
M0033023 CLFKKBPE_00007 10580 3 Skin 0.27 protein_coding synonymous_variant LOW 240T>C Ser80Ser
M0033024 CLFKKBPE_00007 10637 3 Skin 0.27 protein_coding missense_variant MODERATE 297A>T Gln99His
M0033025 CLFKKBPE_00007 10724 3 Skin 0.27 protein_coding synonymous_variant LOW 384T>C His128His
M0033026 CLFKKBPE_00007 10778 3 Skin 0.27 protein_coding synonymous_variant LOW 438T>C Gly146Gly
M0033027 CLFKKBPE_00004 10878 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3152T>G None
M0033028 CLFKKBPE_00004 10879 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -3153A>G None
M0033029 CLFKKBPE_00004 5342 3 Skin 0.27 protein_coding synonymous_variant LOW 2385C>T Thr795Thr
M0033030 CLFKKBPE_00004 5402 3 Skin 0.27 protein_coding synonymous_variant LOW 2325C>T Ser775Ser
M0033031 CLFKKBPE_00004 5864 3 Skin 0.27 protein_coding synonymous_variant LOW 1863T>C Thr621Thr
M0033032 CLFKKBPE_00004 7466 3 Skin 0.27 protein_coding synonymous_variant LOW 261A>G Leu87Leu
M0033033 CLFKKBPE_00004 6851 3 Skin 0.27 protein_coding synonymous_variant LOW 876T>C Thr292Thr
M0033034 CLFKKBPE_00013 17052 4 Skin 0.36 protein_coding missense_variant MODERATE 721G>A Ala241Thr
M0033035 CLFKKBPE_00013 17172 4 Skin 0.36 protein_coding missense_variant MODERATE 601G>T Ala201Ser
M0033036 CLFKKBPE_00013 17194 3 Skin 0.27 protein_coding synonymous_variant LOW 579T>C Asp193Asp
M0033037 CLFKKBPE_00013 17197 3 Skin 0.27 protein_coding synonymous_variant LOW 576C>G Gly192Gly
M0033038 CLFKKBPE_00013 17301 4 Skin 0.36 protein_coding missense_variant MODERATE 472C>A His158Asn
M0033039 CLFKKBPE_00013 17372 4 Skin 0.36 protein_coding missense_variant MODERATE 401C>T Thr134Met
M0033040 CLFKKBPE_00013 17532 4 Skin 0.36 protein_coding missense_variant MODERATE 241G>A Ala81Thr
M0033041 CLFKKBPE_00013 17533 3 Skin 0.27 protein_coding missense_variant MODERATE 240G>A Met80Ile
M0033042 CLFKKBPE_00013 17549 3 Skin 0.27 protein_coding missense_variant MODERATE 224T>C Val75Ala
M0033043 CLFKKBPE_00013 17623 4 Skin 0.36 protein_coding synonymous_variant LOW 150T>C Asn50Asn
M0033044 CLFKKBPE_00013 17665 4 Skin 0.36 protein_coding synonymous_variant LOW 108C>T Pro36Pro
M0033045 CLFKKBPE_00013 17685 3 Skin 0.27 protein_coding missense_variant MODERATE 88A>G Asn30Asp
M0033046 CLFKKBPE_00009 17815 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4125A>G None
M0033047 CLFKKBPE_00009 17826 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4136C>T None
M0033048 CLFKKBPE_00009 17827 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4137C>A None
M0033049 CLFKKBPE_00009 17850 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4160C>T None
M0033050 CLFKKBPE_00014 17964 3 Skin 0.27 protein_coding synonymous_variant LOW 1281C>T Leu427Leu
M0033051 CLFKKBPE_00014 18015 3 Skin 0.27 protein_coding synonymous_variant LOW 1230A>T Ile410Ile
M0033052 CLFKKBPE_00014 18354 4 Skin 0.36 protein_coding synonymous_variant LOW 891G>A Lys297Lys
M0033053 CLFKKBPE_00014 18447 4 Skin 0.36 protein_coding synonymous_variant LOW 798T>C Ser266Ser
M0033054 CLFKKBPE_00014 18495 4 Skin 0.36 protein_coding synonymous_variant LOW 750C>T Ile250Ile
M0033055 CLFKKBPE_00014 18567 4 Skin 0.36 protein_coding synonymous_variant LOW 678A>C Arg226Arg
M0033056 CLFKKBPE_00014 18611 4 Skin 0.36 protein_coding synonymous_variant LOW 634C>T Leu212Leu
M0033057 CLFKKBPE_00014 18636 3 Skin 0.27 protein_coding synonymous_variant LOW 609A>G Ser203Ser
M0033058 CLFKKBPE_00014 18642 4 Skin 0.36 protein_coding synonymous_variant LOW 603A>C Gly201Gly
M0033059 CLFKKBPE_00014 18687 4 Skin 0.36 protein_coding synonymous_variant LOW 558T>C Gly186Gly
M0033060 CLFKKBPE_00014 18706 4 Skin 0.36 protein_coding missense_variant MODERATE 539T>C Val180Ala
M0033061 CLFKKBPE_00014 18761 4 Skin 0.36 protein_coding synonymous_variant LOW 484T>C Leu162Leu
M0033062 CLFKKBPE_00014 18873 3 Skin 0.27 protein_coding synonymous_variant LOW 372A>G Glu124Glu
M0033063 CLFKKBPE_00014 19074 3 Skin 0.27 protein_coding synonymous_variant LOW 171T>C Gly57Gly
M0033064 CLFKKBPE_00014 19083 3 Skin 0.27 protein_coding synonymous_variant LOW 162A>G Val54Val
M0033065 CLFKKBPE_00014 19194 3 Skin 0.27 protein_coding missense_variant MODERATE 51G>T Lys17Asn
M0033066 CLFKKBPE_00014 19201 3 Skin 0.27 protein_coding missense_variant MODERATE 44A>G Gln15Arg
M0033067 CLFKKBPE_00014 19236 4 Skin 0.36 protein_coding synonymous_variant LOW 9A>G Lys3Lys
M0033068 CLFKKBPE_00010 19245 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4273T>C None
M0033069 CLFKKBPE_00010 19277 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4305G>A None
M0033070 CLFKKBPE_00010 19357 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4385T>G None
M0033071 CLFKKBPE_00010 19363 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4391C>A None
M0033072 CLFKKBPE_00010 19369 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4397G>C None
M0033073 CLFKKBPE_00010 19417 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -4445G>A None
M0033074 CLFKKBPE_00015 19492 4 Skin 0.36 protein_coding synonymous_variant LOW 144A>G Thr48Thr
M0033075 CLFKKBPE_00015 19516 4 Skin 0.36 protein_coding synonymous_variant LOW 120T>C Asp40Asp
M0033076 CLFKKBPE_00010 19659 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4687C>A None
M0033077 CLFKKBPE_00010 19660 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4688G>C None
M0033078 CLFKKBPE_00016 19767 3 Skin 0.27 protein_coding synonymous_variant LOW 1041G>A Leu347Leu
M0033079 CLFKKBPE_00016 19923 3 Skin 0.27 protein_coding synonymous_variant LOW 885T>C Ser295Ser
M0033080 CLFKKBPE_00016 19959 3 Skin 0.27 protein_coding synonymous_variant LOW 849C>A Leu283Leu
M0033081 CLFKKBPE_00016 19961 3 Skin 0.27 protein_coding missense_variant MODERATE 847C>T Leu283Phe
M0033082 CLFKKBPE_00016 19968 3 Skin 0.27 protein_coding synonymous_variant LOW 840A>G Ala280Ala
M0033083 CLFKKBPE_00016 20016 3 Skin 0.27 protein_coding synonymous_variant LOW 792A>G Leu264Leu
M0033084 CLFKKBPE_00016 20073 3 Skin 0.27 protein_coding synonymous_variant LOW 735C>T Asn245Asn
M0033085 CLFKKBPE_00016 20076 3 Skin 0.27 protein_coding synonymous_variant LOW 732C>T Leu244Leu
M0033086 CLFKKBPE_00016 20107 3 Skin 0.27 protein_coding missense_variant MODERATE 701C>A Pro234His
M0033087 CLFKKBPE_00016 20112 3 Skin 0.27 protein_coding synonymous_variant LOW 696G>C Thr232Thr
M0033088 CLFKKBPE_00016 20154 3 Skin 0.27 protein_coding synonymous_variant LOW 654G>A Leu218Leu
M0033089 CLFKKBPE_00016 20156 3 Skin 0.27 protein_coding missense_variant MODERATE 652C>A Leu218Met
M0033090 CLFKKBPE_00016 20223 3 Skin 0.27 protein_coding synonymous_variant LOW 585C>T Asp195Asp
M0033091 CLFKKBPE_00016 20370 3 Skin 0.27 protein_coding synonymous_variant LOW 438C>G Val146Val
M0033092 CLFKKBPE_00016 20445 3 Skin 0.27 protein_coding synonymous_variant LOW 363T>C Asp121Asp
M0033093 CLFKKBPE_00016 20538 3 Skin 0.27 protein_coding synonymous_variant LOW 270A>G Ala90Ala
M0033094 CLFKKBPE_00016 20568 3 Skin 0.27 protein_coding synonymous_variant LOW 240T>C Tyr80Tyr
M0033095 CLFKKBPE_00016 20712 3 Skin 0.27 protein_coding synonymous_variant LOW 96T>C Gly32Gly
M0033096 CLFKKBPE_00016 20742 3 Skin 0.27 protein_coding synonymous_variant LOW 66T>G Gly22Gly
M0033097 CLFKKBPE_00017 20995 3 Skin 0.27 protein_coding synonymous_variant LOW 1431C>G Val477Val
M0033098 CLFKKBPE_00017 21020 3 Skin 0.27 protein_coding missense_variant MODERATE 1406C>T Thr469Ile
M0033099 CLFKKBPE_00017 21021 3 Skin 0.27 protein_coding missense_variant MODERATE 1405A>G Thr469Ala
M0033100 CLFKKBPE_00017 21028 3 Skin 0.27 protein_coding synonymous_variant LOW 1398C>T Tyr466Tyr
M0033101 CLFKKBPE_00017 21067 3 Skin 0.27 protein_coding synonymous_variant LOW 1359A>G Gly453Gly
M0033102 CLFKKBPE_00017 21094 3 Skin 0.27 protein_coding synonymous_variant LOW 1332G>A Glu444Glu
M0033103 CLFKKBPE_00017 21286 3 Skin 0.27 protein_coding synonymous_variant LOW 1140A>G Gln380Gln
M0033104 CLFKKBPE_00017 21316 3 Skin 0.27 protein_coding synonymous_variant LOW 1110G>C Val370Val
M0033105 CLFKKBPE_00017 21325 3 Skin 0.27 protein_coding synonymous_variant LOW 1101A>C Ser367Ser
M0033106 CLFKKBPE_00017 21418 3 Skin 0.27 protein_coding synonymous_variant LOW 1008A>G Ala336Ala
M0033107 CLFKKBPE_00017 21436 3 Skin 0.27 protein_coding synonymous_variant LOW 990A>G Leu330Leu
M0033108 CLFKKBPE_00017 21523 3 Skin 0.27 protein_coding synonymous_variant LOW 903A>G Ser301Ser
M0033109 CLFKKBPE_00010 14219 3 Skin 0.27 protein_coding missense_variant MODERATE 754A>C Ile252Leu
M0033110 CLFKKBPE_00010 14241 3 Skin 0.27 protein_coding synonymous_variant LOW 732A>G Leu244Leu
M0033111 CLFKKBPE_00010 14505 3 Skin 0.27 protein_coding synonymous_variant LOW 468C>T Ala156Ala
M0033112 CLFKKBPE_00010 14936 3 Skin 0.27 protein_coding missense_variant MODERATE 37C>T Pro13Ser
M0033113 CLFKKBPE_00010 14942 3 Skin 0.27 protein_coding missense_variant MODERATE 31A>C Asn11His
M0033114 CLFKKBPE_00010 14948 3 Skin 0.27 protein_coding missense_variant MODERATE 25T>A Ser9Thr
M0033115 CLFKKBPE_00010 14954 3 Skin 0.27 protein_coding missense_variant MODERATE 19T>C Tyr7His
M0033116 CLFKKBPE_00010 14959 3 Skin 0.27 protein_coding missense_variant MODERATE 14T>C Leu5Ser
M0033117 CLFKKBPE_00009 15159 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1469A>C None
M0033118 CLFKKBPE_00011 15250 3 Skin 0.27 protein_coding missense_variant MODERATE 89A>G Gln30Arg
M0033119 CLFKKBPE_00011 15270 3 Skin 0.27 protein_coding missense_variant MODERATE 109A>C Asn37His
M0033120 CLFKKBPE_00011 15275 3 Skin 0.27 protein_coding synonymous_variant LOW 114T>C Ala38Ala
M0033121 CLFKKBPE_00011 15359 3 Skin 0.27 protein_coding synonymous_variant LOW 198A>G Leu66Leu
M0033122 CLFKKBPE_00011 15410 3 Skin 0.27 protein_coding synonymous_variant LOW 249T>C Thr83Thr
M0033123 CLFKKBPE_00011 15422 3 Skin 0.27 protein_coding synonymous_variant LOW 261A>G Arg87Arg
M0033124 CLFKKBPE_00011 15545 3 Skin 0.27 protein_coding synonymous_variant LOW 384A>G Val128Val
M0033125 CLFKKBPE_00011 15557 3 Skin 0.27 protein_coding synonymous_variant LOW 396T>C Ile132Ile
M0033126 CLFKKBPE_00012 15781 3 Skin 0.27 protein_coding synonymous_variant LOW 24G>A Leu8Leu
M0033127 CLFKKBPE_00012 16159 3 Skin 0.27 protein_coding synonymous_variant LOW 402T>C Asp134Asp
M0033128 CLFKKBPE_00012 16198 3 Skin 0.27 protein_coding synonymous_variant LOW 441C>G Ala147Ala
M0033129 CLFKKBPE_00012 16207 3 Skin 0.27 protein_coding synonymous_variant LOW 450G>A Gln150Gln
M0033130 CLFKKBPE_00013 17201 3 Skin 0.27 protein_coding missense_variant MODERATE 572A>G Asp191Gly
M0033131 CLFKKBPE_00013 17481 3 Skin 0.27 protein_coding missense_variant MODERATE 292T>A Ser98Thr
M0033132 CLFKKBPE_00013 17492 3 Skin 0.27 protein_coding missense_variant MODERATE 281C>T Thr94Ile
M0033133 CLFKKBPE_00014 17883 3 Skin 0.27 protein_coding synonymous_variant LOW 1362C>T His454His
M0033134 CLFKKBPE_00014 18225 3 Skin 0.27 protein_coding synonymous_variant LOW 1020G>A Ala340Ala
M0033135 CLFKKBPE_00014 18603 3 Skin 0.27 protein_coding synonymous_variant LOW 642A>C Leu214Leu
M0033136 CLFKKBPE_00014 18942 3 Skin 0.27 protein_coding synonymous_variant LOW 303T>C Ile101Ile
M0033137 CLFKKBPE_00010 19248 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -4276T>C None
M0033138 CLFKKBPE_00015 19427 3 Skin 0.27 protein_coding stop_lost&splice_region_variant HIGH 209A>T Ter70Leuext*?
M0033139 CLFKKBPE_00015 19450 3 Skin 0.27 protein_coding synonymous_variant LOW 186C>T Gly62Gly
M0033140 CLFKKBPE_00015 19521 3 Skin 0.27 protein_coding missense_variant MODERATE 115C>A Gln39Lys






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term