Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2297
  Reference Plasmid   1111525849760419_bin.3__k141_198186
  Reference Plasmid Size   61079
  Reference Plasmid GC Content   0.56
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0035061 PHMBBMIP_00020 16075 3 Skin 0.38 protein_coding synonymous_variant LOW 459C>T Val153Val
M0035062 PHMBBMIP_00020 16204 4 Skin 0.50 protein_coding synonymous_variant LOW 330C>T Tyr110Tyr
M0035063 PHMBBMIP_00020 16210 3 Skin 0.38 protein_coding synonymous_variant LOW 324G>C Leu108Leu
M0035064 PHMBBMIP_00020 16216 3 Skin 0.38 protein_coding synonymous_variant LOW 318A>G Ser106Ser
M0035065 PHMBBMIP_00020 16356 4 Skin 0.50 protein_coding synonymous_variant LOW 178C>T Leu60Leu
M0035066 PHMBBMIP_00020 16360 3 Skin 0.38 protein_coding synonymous_variant LOW 174T>G Ser58Ser
M0035067 PHMBBMIP_00020 16366 3 Skin 0.38 protein_coding synonymous_variant LOW 168A>G Pro56Pro
M0035068 PHMBBMIP_00020 16381 3 Skin 0.38 protein_coding synonymous_variant LOW 153T>C Ser51Ser
M0035069 PHMBBMIP_00021 16610 3 Skin 0.38 protein_coding synonymous_variant LOW 105T>C Arg35Arg
M0035070 PHMBBMIP_00015 16815 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -4507C>T None
M0035071 PHMBBMIP_00015 16850 4 Skin 0.50 protein_coding upstream_gene_variant MODIFIER -4542A>G None
M0035072 PHMBBMIP_00022 16914 3 Skin 0.38 protein_coding synonymous_variant LOW 1389C>G Thr463Thr
M0035073 PHMBBMIP_00022 16935 3 Skin 0.38 protein_coding synonymous_variant LOW 1368T>C Phe456Phe
M0035074 PHMBBMIP_00022 17034 3 Skin 0.38 protein_coding synonymous_variant LOW 1269G>C Ala423Ala
M0035075 PHMBBMIP_00022 17097 3 Skin 0.38 protein_coding missense_variant MODERATE 1206A>C Glu402Asp
M0035076 PHMBBMIP_00022 17124 4 Skin 0.50 protein_coding synonymous_variant LOW 1179C>G Gly393Gly
M0035077 PHMBBMIP_00022 17136 4 Skin 0.50 protein_coding synonymous_variant LOW 1167C>T Gly389Gly
M0035078 PHMBBMIP_00022 17214 4 Skin 0.50 protein_coding synonymous_variant LOW 1089A>G Arg363Arg
M0035079 PHMBBMIP_00022 17223 4 Skin 0.50 protein_coding synonymous_variant LOW 1080C>T Cys360Cys
M0035080 PHMBBMIP_00022 17229 4 Skin 0.50 protein_coding synonymous_variant LOW 1074C>T Ile358Ile
M0035081 PHMBBMIP_00022 17232 3 Skin 0.38 protein_coding synonymous_variant LOW 1071T>C Arg357Arg
M0035082 PHMBBMIP_00022 17421 4 Skin 0.50 protein_coding synonymous_variant LOW 882T>C Asn294Asn
M0035083 PHMBBMIP_00022 17613 4 Skin 0.50 protein_coding synonymous_variant LOW 690A>G Gln230Gln
M0035084 PHMBBMIP_00022 17676 3 Skin 0.38 protein_coding synonymous_variant LOW 627T>C Asp209Asp
M0035085 PHMBBMIP_00022 17745 3 Skin 0.38 protein_coding synonymous_variant LOW 558C>T Arg186Arg
M0035086 PHMBBMIP_00022 17942 4 Skin 0.50 protein_coding synonymous_variant LOW 361T>C Leu121Leu
M0035087 PHMBBMIP_00022 17970 3 Skin 0.38 protein_coding synonymous_variant LOW 333C>A Ala111Ala
M0035088 PHMBBMIP_00022 17985 4 Skin 0.50 protein_coding synonymous_variant LOW 318T>G Thr106Thr
M0035089 PHMBBMIP_00022 17988 3 Skin 0.38 protein_coding synonymous_variant LOW 315T>C Gly105Gly
M0035090 PHMBBMIP_00022 18105 3 Skin 0.38 protein_coding synonymous_variant LOW 198A>G Lys66Lys
M0035091 PHMBBMIP_00022 18117 4 Skin 0.50 protein_coding synonymous_variant LOW 186T>C Ser62Ser
M0035092 PHMBBMIP_00022 18162 4 Skin 0.50 protein_coding synonymous_variant LOW 141T>G Leu47Leu
M0035093 PHMBBMIP_00022 18186 4 Skin 0.50 protein_coding synonymous_variant LOW 117C>T Tyr39Tyr
M0035094 PHMBBMIP_00022 18297 4 Skin 0.50 protein_coding missense_variant MODERATE 6A>T Glu2Asp
M0035095 PHMBBMIP_00023 18677 4 Skin 0.50 protein_coding synonymous_variant LOW 162A>G Leu54Leu
M0035096 PHMBBMIP_00023 19089 4 Skin 0.50 protein_coding missense_variant MODERATE 574A>T Thr192Ser
M0035097 PHMBBMIP_00023 19172 3 Skin 0.38 protein_coding synonymous_variant LOW 657A>G Val219Val
M0035098 PHMBBMIP_00024 19557 4 Skin 0.50 protein_coding synonymous_variant LOW 252C>T Asp84Asp
M0035099 PHMBBMIP_00024 19677 4 Skin 0.50 protein_coding synonymous_variant LOW 372A>T Ile124Ile
M0035100 PHMBBMIP_00024 19719 3 Skin 0.38 protein_coding synonymous_variant LOW 414A>G Glu138Glu
M0035101 PHMBBMIP_00024 19862 4 Skin 0.50 protein_coding splice_region_variant&stop_retained_variant LOW 557A>G Ter186Ter
M0035102 PHMBBMIP_00020 19985 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3452A>G None
M0035103 PHMBBMIP_00020 20079 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3546C>A None
M0035104 PHMBBMIP_00025 20313 4 Skin 0.50 protein_coding synonymous_variant LOW 201C>T Arg67Arg
M0035105 PHMBBMIP_00025 20319 4 Skin 0.50 protein_coding synonymous_variant LOW 207C>T Ala69Ala
M0035106 PHMBBMIP_00025 20493 4 Skin 0.50 protein_coding synonymous_variant LOW 381A>C Ala127Ala
M0035107 PHMBBMIP_00025 20526 3 Skin 0.38 protein_coding synonymous_variant LOW 414C>T Val138Val
M0035108 PHMBBMIP_00025 20538 3 Skin 0.38 protein_coding synonymous_variant LOW 426G>C Val142Val
M0035109 PHMBBMIP_00025 20593 4 Skin 0.50 protein_coding missense_variant MODERATE 481G>A Val161Met
M0035110 PHMBBMIP_00025 20595 4 Skin 0.50 protein_coding synonymous_variant LOW 483G>T Val161Val
M0035111 PHMBBMIP_00025 20667 4 Skin 0.50 protein_coding synonymous_variant LOW 555C>T Gly185Gly
M0035112 PHMBBMIP_00025 20733 4 Skin 0.50 protein_coding synonymous_variant LOW 621A>G Ala207Ala
M0035113 PHMBBMIP_00025 20892 4 Skin 0.50 protein_coding synonymous_variant LOW 780C>T Asn260Asn
M0035114 PHMBBMIP_00025 20904 4 Skin 0.50 protein_coding synonymous_variant LOW 792A>G Val264Val
M0035115 PHMBBMIP_00025 20922 3 Skin 0.38 protein_coding synonymous_variant LOW 810C>T Gly270Gly
M0035116 PHMBBMIP_00025 21027 4 Skin 0.50 protein_coding synonymous_variant LOW 915A>C Gly305Gly
M0035117 PHMBBMIP_00025 21073 4 Skin 0.50 protein_coding synonymous_variant LOW 961C>T Leu321Leu
M0035118 PHMBBMIP_00025 21084 4 Skin 0.50 protein_coding synonymous_variant LOW 972C>A Ala324Ala
M0035119 PHMBBMIP_00025 21108 4 Skin 0.50 protein_coding synonymous_variant LOW 996C>T Gly332Gly
M0035120 PHMBBMIP_00025 21138 3 Skin 0.38 protein_coding synonymous_variant LOW 1026G>A Gly342Gly
M0035121 PHMBBMIP_00025 21240 3 Skin 0.38 protein_coding synonymous_variant LOW 1128A>T Pro376Pro
M0035122 PHMBBMIP_00025 21282 4 Skin 0.50 protein_coding synonymous_variant LOW 1170A>C Ala390Ala
M0035123 PHMBBMIP_00025 21324 4 Skin 0.50 protein_coding synonymous_variant LOW 1212G>C Val404Val
M0035124 PHMBBMIP_00025 21492 4 Skin 0.50 protein_coding synonymous_variant LOW 1380T>C Thr460Thr
M0035125 PHMBBMIP_00026 21644 3 Skin 0.38 protein_coding synonymous_variant LOW 42C>T Asn14Asn
M0035126 PHMBBMIP_00026 21647 3 Skin 0.38 protein_coding synonymous_variant LOW 45G>A Lys15Lys
M0035127 PHMBBMIP_00026 21662 4 Skin 0.50 protein_coding synonymous_variant LOW 60A>G Pro20Pro
M0035128 PHMBBMIP_00026 21674 4 Skin 0.50 protein_coding synonymous_variant LOW 72G>A Glu24Glu
M0035129 PHMBBMIP_00026 21682 3 Skin 0.38 protein_coding missense_variant MODERATE 80A>C Asn27Thr
M0035130 PHMBBMIP_00026 21689 3 Skin 0.38 protein_coding synonymous_variant LOW 87C>T Asp29Asp
M0035131 PHMBBMIP_00026 21752 3 Skin 0.38 protein_coding synonymous_variant LOW 150C>T Gly50Gly
M0035132 PHMBBMIP_00026 22046 4 Skin 0.50 protein_coding synonymous_variant LOW 444T>C Gly148Gly
M0035133 PHMBBMIP_00026 22061 3 Skin 0.38 protein_coding synonymous_variant LOW 459A>G Glu153Glu
M0035134 PHMBBMIP_00026 22265 3 Skin 0.38 protein_coding synonymous_variant LOW 663G>T Ala221Ala
M0035135 PHMBBMIP_00026 22307 4 Skin 0.50 protein_coding synonymous_variant LOW 705T>C Asn235Asn
M0035136 PHMBBMIP_00026 22385 4 Skin 0.50 protein_coding synonymous_variant LOW 783C>T Ala261Ala
M0035137 PHMBBMIP_00026 22389 4 Skin 0.50 protein_coding synonymous_variant LOW 787T>C Leu263Leu
M0035138 PHMBBMIP_00026 22391 4 Skin 0.50 protein_coding synonymous_variant LOW 789A>G Leu263Leu
M0035139 PHMBBMIP_00026 22397 3 Skin 0.38 protein_coding synonymous_variant LOW 795A>G Glu265Glu
M0035140 PHMBBMIP_00026 22400 3 Skin 0.38 protein_coding missense_variant MODERATE 798G>C Glu266Asp
M0035141 PHMBBMIP_00026 22401 3 Skin 0.38 protein_coding missense_variant MODERATE 799C>T Leu267Phe
M0035142 PHMBBMIP_00026 22403 3 Skin 0.38 protein_coding synonymous_variant LOW 801C>A Leu267Leu
M0035143 PHMBBMIP_00026 22415 4 Skin 0.50 protein_coding synonymous_variant LOW 813T>G Leu271Leu
M0035144 PHMBBMIP_00026 22442 4 Skin 0.50 protein_coding synonymous_variant LOW 840C>T Asp280Asp
M0035145 PHMBBMIP_00026 22469 3 Skin 0.38 protein_coding synonymous_variant LOW 867T>C Arg289Arg
M0035146 PHMBBMIP_00026 22538 4 Skin 0.50 protein_coding synonymous_variant LOW 936A>C Val312Val
M0035147 PHMBBMIP_00026 22544 4 Skin 0.50 protein_coding synonymous_variant LOW 942T>G Arg314Arg
M0035148 PHMBBMIP_00026 22649 3 Skin 0.38 protein_coding synonymous_variant LOW 1047G>A Gln349Gln
M0035149 PHMBBMIP_00026 22661 4 Skin 0.50 protein_coding synonymous_variant LOW 1059G>C Leu353Leu
M0035150 PHMBBMIP_00026 22697 4 Skin 0.50 protein_coding synonymous_variant LOW 1095T>C Gly365Gly
M0035151 PHMBBMIP_00026 22706 3 Skin 0.38 protein_coding synonymous_variant LOW 1104G>A Val368Val
M0035152 PHMBBMIP_00026 22712 3 Skin 0.38 protein_coding synonymous_variant LOW 1110T>C Cys370Cys
M0035153 PHMBBMIP_00026 22715 4 Skin 0.50 protein_coding synonymous_variant LOW 1113T>C Thr371Thr
M0035154 PHMBBMIP_00026 22790 4 Skin 0.50 protein_coding synonymous_variant LOW 1188T>G Pro396Pro
M0035155 PHMBBMIP_00026 22868 3 Skin 0.38 protein_coding synonymous_variant LOW 1266T>C Asp422Asp
M0035156 PHMBBMIP_00027 23134 4 Skin 0.50 protein_coding synonymous_variant LOW 205T>C Leu69Leu
M0035157 PHMBBMIP_00027 23217 4 Skin 0.50 protein_coding synonymous_variant LOW 288A>G Ala96Ala
M0035158 PHMBBMIP_00027 23271 3 Skin 0.38 protein_coding synonymous_variant LOW 342A>C Val114Val
M0035159 PHMBBMIP_00027 23631 3 Skin 0.38 protein_coding synonymous_variant LOW 702A>G Val234Val
M0035160 PHMBBMIP_00027 23769 3 Skin 0.38 protein_coding synonymous_variant LOW 840C>T Gly280Gly
M0035161 PHMBBMIP_00027 23826 4 Skin 0.50 protein_coding synonymous_variant LOW 897T>C Gly299Gly
M0035162 PHMBBMIP_00027 24096 4 Skin 0.50 protein_coding synonymous_variant LOW 1167C>T Gly389Gly
M0035163 PHMBBMIP_00027 24147 3 Skin 0.38 protein_coding synonymous_variant LOW 1218T>C Ala406Ala
M0035164 PHMBBMIP_00027 24156 4 Skin 0.50 protein_coding synonymous_variant LOW 1227A>C Ser409Ser
M0035165 PHMBBMIP_00027 24171 4 Skin 0.50 protein_coding synonymous_variant LOW 1242C>T Ile414Ile
M0035166 PHMBBMIP_00028 24236 3 Skin 0.38 protein_coding synonymous_variant LOW 921T>C Ser307Ser
M0035167 PHMBBMIP_00028 24363 3 Skin 0.38 protein_coding missense_variant MODERATE 794A>T Tyr265Phe
M0035168 PHMBBMIP_00028 24365 3 Skin 0.38 protein_coding synonymous_variant LOW 792T>C Tyr264Tyr
M0035169 PHMBBMIP_00028 24746 4 Skin 0.50 protein_coding synonymous_variant LOW 411G>A Leu137Leu
M0035170 PHMBBMIP_00028 24791 3 Skin 0.38 protein_coding synonymous_variant LOW 366G>A Pro122Pro
M0035171 PHMBBMIP_00028 24803 3 Skin 0.38 protein_coding synonymous_variant LOW 354C>G Ala118Ala
M0035172 PHMBBMIP_00028 24821 3 Skin 0.38 protein_coding synonymous_variant LOW 336C>G Pro112Pro
M0035173 PHMBBMIP_00028 24827 3 Skin 0.38 protein_coding synonymous_variant LOW 330C>G Val110Val
M0035174 PHMBBMIP_00028 24836 3 Skin 0.38 protein_coding synonymous_variant LOW 321C>T Arg107Arg
M0035175 PHMBBMIP_00028 24839 3 Skin 0.38 protein_coding synonymous_variant LOW 318T>C Gly106Gly
M0035176 PHMBBMIP_00028 24845 3 Skin 0.38 protein_coding synonymous_variant LOW 312C>T Gly104Gly
M0035177 PHMBBMIP_00028 24863 4 Skin 0.50 protein_coding synonymous_variant LOW 294A>T Arg98Arg
M0035178 PHMBBMIP_00028 24866 3 Skin 0.38 protein_coding synonymous_variant LOW 291A>G Leu97Leu
M0035179 PHMBBMIP_00028 24962 4 Skin 0.50 protein_coding synonymous_variant LOW 195A>G Gly65Gly
M0035180 PHMBBMIP_00028 24986 4 Skin 0.50 protein_coding synonymous_variant LOW 171C>T Arg57Arg
M0035181 PHMBBMIP_00029 25418 3 Skin 0.38 protein_coding synonymous_variant LOW 159C>T His53His
M0035182 PHMBBMIP_00029 25526 3 Skin 0.38 protein_coding synonymous_variant LOW 267A>T Leu89Leu
M0035183 PHMBBMIP_00029 25532 3 Skin 0.38 protein_coding synonymous_variant LOW 273T>G Gly91Gly
M0035184 PHMBBMIP_00011 8591 3 Skin 0.38 protein_coding synonymous_variant LOW 837A>G Val279Val
M0035185 PHMBBMIP_00011 8638 3 Skin 0.38 protein_coding synonymous_variant LOW 790T>C Leu264Leu
M0035186 PHMBBMIP_00011 8711 3 Skin 0.38 protein_coding synonymous_variant LOW 717A>G Pro239Pro
M0035187 PHMBBMIP_00011 8773 3 Skin 0.38 protein_coding synonymous_variant LOW 655T>C Leu219Leu
M0035188 PHMBBMIP_00011 8774 3 Skin 0.38 protein_coding synonymous_variant LOW 654G>A Gly218Gly
M0035189 PHMBBMIP_00011 8846 3 Skin 0.38 protein_coding synonymous_variant LOW 582A>T Ala194Ala
M0035190 PHMBBMIP_00011 8858 3 Skin 0.38 protein_coding synonymous_variant LOW 570T>C Ala190Ala
M0035191 PHMBBMIP_00011 8948 3 Skin 0.38 protein_coding synonymous_variant LOW 480C>G Ala160Ala
M0035192 PHMBBMIP_00011 8978 3 Skin 0.38 protein_coding synonymous_variant LOW 450A>G Gly150Gly
M0035193 PHMBBMIP_00011 8984 3 Skin 0.38 protein_coding synonymous_variant LOW 444G>T Ala148Ala
M0035194 PHMBBMIP_00011 8996 3 Skin 0.38 protein_coding synonymous_variant LOW 432T>C Asn144Asn
M0035195 PHMBBMIP_00011 9050 3 Skin 0.38 protein_coding synonymous_variant LOW 378T>C Cys126Cys
M0035196 PHMBBMIP_00011 9101 3 Skin 0.38 protein_coding synonymous_variant LOW 327A>G Val109Val
M0035197 PHMBBMIP_00011 9182 3 Skin 0.38 protein_coding synonymous_variant LOW 246T>C Gly82Gly
M0035198 PHMBBMIP_00011 9209 3 Skin 0.38 protein_coding synonymous_variant LOW 219C>G Val73Val
M0035199 PHMBBMIP_00011 9407 3 Skin 0.38 protein_coding synonymous_variant LOW 21A>G Ser7Ser
M0035200 PHMBBMIP_00011 9429 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -2G>T None
M0035201 PHMBBMIP_00011 9775 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -348T>C None
M0035202 PHMBBMIP_00011 9966 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -539A>T None
M0035203 PHMBBMIP_00011 10011 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -584T>C None
M0035204 PHMBBMIP_00011 10088 3 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -661G>A None
M0035205 PHMBBMIP_00013 10206 3 Skin 0.38 protein_coding synonymous_variant LOW 57C>T Ala19Ala
M0035206 PHMBBMIP_00013 10407 3 Skin 0.38 protein_coding synonymous_variant LOW 258A>G Gln86Gln
M0035207 PHMBBMIP_00013 10437 3 Skin 0.38 protein_coding synonymous_variant LOW 288T>C Gly96Gly
M0035208 PHMBBMIP_00013 10482 3 Skin 0.38 protein_coding synonymous_variant LOW 333C>T Phe111Phe
M0035209 PHMBBMIP_00015 11313 3 Skin 0.38 protein_coding synonymous_variant LOW 996G>C Pro332Pro
M0035210 PHMBBMIP_00015 11361 3 Skin 0.38 protein_coding synonymous_variant LOW 948T>C Asn316Asn
M0035211 PHMBBMIP_00015 11400 3 Skin 0.38 protein_coding synonymous_variant LOW 909G>T Ala303Ala
M0035212 PHMBBMIP_00015 11415 3 Skin 0.38 protein_coding synonymous_variant LOW 894A>G Val298Val
M0035213 PHMBBMIP_00015 11724 3 Skin 0.38 protein_coding synonymous_variant LOW 585A>G Ser195Ser
M0035214 PHMBBMIP_00015 12013 3 Skin 0.38 protein_coding missense_variant MODERATE 296A>C Asn99Thr
M0035215 PHMBBMIP_00015 12225 3 Skin 0.38 protein_coding synonymous_variant LOW 84A>G Pro28Pro
M0035216 PHMBBMIP_00020 15415 3 Skin 0.38 protein_coding synonymous_variant LOW 1119T>C Ala373Ala
M0035217 PHMBBMIP_00020 15655 3 Skin 0.38 protein_coding synonymous_variant LOW 879T>C Phe293Phe
M0035218 PHMBBMIP_00020 15727 3 Skin 0.38 protein_coding synonymous_variant LOW 807T>C Arg269Arg
M0035219 PHMBBMIP_00020 15750 3 Skin 0.38 protein_coding synonymous_variant LOW 784T>C Leu262Leu
M0035220 PHMBBMIP_00020 15924 3 Skin 0.38 protein_coding synonymous_variant LOW 610T>C Leu204Leu
M0035221 PHMBBMIP_00020 15937 3 Skin 0.38 protein_coding synonymous_variant LOW 597T>C Ser199Ser
M0035222 PHMBBMIP_00020 15961 3 Skin 0.38 protein_coding synonymous_variant LOW 573T>C Val191Val
M0035223 PHMBBMIP_00020 16333 3 Skin 0.38 protein_coding synonymous_variant LOW 201A>G Leu67Leu
M0035224 PHMBBMIP_00020 16387 3 Skin 0.38 protein_coding synonymous_variant LOW 147C>T Gly49Gly
M0035225 PHMBBMIP_00025 21171 3 Skin 0.38 protein_coding synonymous_variant LOW 1059A>G Val353Val
M0035226 PHMBBMIP_00029 25382 3 Skin 0.38 protein_coding synonymous_variant LOW 123G>A Glu41Glu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition
PHMBBMIP_00048 VFG001827 ShET2 72.6 3.4e-159 13 389 0.9692 0.9642 Exotoxin enterotoxin experiment
PHMBBMIP_00049 VFG002319 Flagella 90 5.2e-118 1 239 0.9958 0.9958 Motility flagellar biosynthesis sigma factor experiment
PHMBBMIP_00052 VFG002325 Flagella 78.6 2.3e-54 1 131 0.9632 0.9924 Motility flagellar protein FliS experiment
PHMBBMIP_00048 VFG001827 ShET2 72.6 2.5e-158 13 389 0.9692 0.9642 Exotoxin enterotoxin prediction
PHMBBMIP_00049 VFG002319 Flagella 90 3.9e-117 1 239 0.9958 0.9958 Motility flagellar biosynthesis sigma factor prediction
PHMBBMIP_00052 VFG002325 Flagella 78.6 1.7e-53 1 131 0.9632 0.9924 Motility flagellar protein FliS prediction







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
PHMBBMIP_00012 PHI:10387 SEN1538 84.5 2.6e-19 1 57 1.0000 0.9667 rodents salmonellosis conserved hypothetical protein reduced virulence
PHMBBMIP_00048 PHI:10795 senB 72.3 2.6e-158 13 389 0.9692 0.9693 primates neonatal meningitis enterotoxin increased virulence (hypervirulence)
PHMBBMIP_00050 PHI:2642 FliC 73.9 4.9e-147 1 416 1.0000 1.0000 bony fishes edwardsiellosis flagellin protein reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
PHMBBMIP_00010 2.A.40.1.3 82.2 1.9e-194 1 428 0.9727 0.9683 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.40 The Nucleobase/Ascorbate Transporter (NAT) or Nucleobase:Cation Symporter-2 (NCS2) Family
PHMBBMIP_00020 2.A.3.1.13 92.7 1.4e-235 1 449 0.9698 0.9740 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.3 The Amino Acid-Polyamine-Organocation (APC) Family
PHMBBMIP_00030 2.A.15.2.3 88.5 5.2e-250 56 531 0.8897 0.9979 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.15 The Betaine/Carnitine/Choline Transporter (BCCT) Family
PHMBBMIP_00034 4.A.2.1.10 78.9 0 1 833 1.0000 7.8585 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.2 The PTS Fructose-Mannitol (Fru) Family
PHMBBMIP_00035 4.A.2.1.10 84.7 2.8e-167 1 358 1.0000 3.3868 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.2 The PTS Fructose-Mannitol (Fru) Family
PHMBBMIP_00036 4.A.2.1.10 88.7 1.2e-46 1 106 1.0000 1.0000 4 Group Translocators 4.A Phosphotransfer-driven Group Translocators (PTS) 4.A.2 The PTS Fructose-Mannitol (Fru) Family
PHMBBMIP_00043 3.A.1.10.1 73.9 1.6e-208 15 524 0.9733 1.4783 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
PHMBBMIP_00044 3.A.1.10.1 82 1e-158 1 338 1.0000 0.9797 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily