Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2299
  Reference Plasmid   1111525849760419_bin.3__k141_90951
  Reference Plasmid Size   26337
  Reference Plasmid GC Content   0.55
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0036173 BAKNIANG_00023 18378 3 Skin 0.60 protein_coding synonymous_variant LOW 567C>T Ile189Ile
M0036174 BAKNIANG_00023 18387 3 Skin 0.60 protein_coding synonymous_variant LOW 576T>C Arg192Arg
M0036175 BAKNIANG_00023 18537 3 Skin 0.60 protein_coding synonymous_variant LOW 726A>G Leu242Leu
M0036176 BAKNIANG_00023 18609 3 Skin 0.60 protein_coding synonymous_variant LOW 798T>C Arg266Arg
M0036177 BAKNIANG_00023 18630 3 Skin 0.60 protein_coding synonymous_variant LOW 819T>C Ala273Ala
M0036178 BAKNIANG_00023 18639 3 Skin 0.60 protein_coding synonymous_variant LOW 828T>C Val276Val
M0036179 BAKNIANG_00023 18650 3 Skin 0.60 protein_coding missense_variant MODERATE 839A>G Lys280Arg
M0036180 BAKNIANG_00023 18651 3 Skin 0.60 protein_coding missense_variant MODERATE 840G>C Lys280Asn
M0036181 BAKNIANG_00023 18678 3 Skin 0.60 protein_coding synonymous_variant LOW 867T>C Arg289Arg
M0036182 BAKNIANG_00023 18685 3 Skin 0.60 protein_coding missense_variant MODERATE 874G>C Glu292Gln
M0036183 BAKNIANG_00023 18773 3 Skin 0.60 protein_coding missense_variant MODERATE 962A>C Glu321Ala
M0036184 BAKNIANG_00023 18787 3 Skin 0.60 protein_coding missense_variant MODERATE 976A>C Lys326Gln
M0036185 BAKNIANG_00023 18853 3 Skin 0.60 protein_coding synonymous_variant LOW 1042T>C Leu348Leu
M0036186 BAKNIANG_00024 19295 3 Skin 0.60 protein_coding synonymous_variant LOW 342C>T Arg114Arg
M0036187 BAKNIANG_00024 19330 3 Skin 0.60 protein_coding missense_variant MODERATE 377C>T Ala126Val
M0036188 BAKNIANG_00024 19334 3 Skin 0.60 protein_coding synonymous_variant LOW 381A>G Leu127Leu
M0036189 BAKNIANG_00024 19493 3 Skin 0.60 protein_coding synonymous_variant LOW 540T>C Asn180Asn
M0036190 BAKNIANG_00024 19549 3 Skin 0.60 protein_coding missense_variant MODERATE 596G>A Arg199Gln
M0036191 BAKNIANG_00024 19631 3 Skin 0.60 protein_coding synonymous_variant LOW 678A>G Pro226Pro
M0036192 BAKNIANG_00024 19634 3 Skin 0.60 protein_coding synonymous_variant LOW 681A>G Lys227Lys
M0036193 BAKNIANG_00024 19919 3 Skin 0.60 protein_coding synonymous_variant LOW 966T>C His322His
M0036194 BAKNIANG_00024 19946 3 Skin 0.60 protein_coding synonymous_variant LOW 993A>G Arg331Arg
M0036195 BAKNIANG_00025 20534 3 Skin 0.60 protein_coding synonymous_variant LOW 303G>C Ala101Ala
M0036196 BAKNIANG_00025 20537 3 Skin 0.60 protein_coding synonymous_variant LOW 306G>A Glu102Glu
M0036197 BAKNIANG_00025 20735 3 Skin 0.60 protein_coding synonymous_variant LOW 504T>C Thr168Thr
M0036198 BAKNIANG_00026 21914 3 Skin 0.60 protein_coding synonymous_variant LOW 234G>A Thr78Thr
M0036199 BAKNIANG_00026 22019 3 Skin 0.60 protein_coding synonymous_variant LOW 129C>T Ile43Ile
M0036200 BAKNIANG_00026 22049 3 Skin 0.60 protein_coding synonymous_variant LOW 99C>T Ala33Ala
M0036201 BAKNIANG_00026 22294 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -147G>A None
M0036202 BAKNIANG_00027 22493 3 Skin 0.60 protein_coding missense_variant MODERATE 31A>C Ile11Leu
M0036203 BAKNIANG_00027 22528 3 Skin 0.60 protein_coding synonymous_variant LOW 66A>G Ala22Ala
M0036204 BAKNIANG_00027 22538 3 Skin 0.60 protein_coding missense_variant MODERATE 76A>G Asn26Asp
M0036205 BAKNIANG_00027 22564 3 Skin 0.60 protein_coding synonymous_variant LOW 102C>T Gly34Gly
M0036206 BAKNIANG_00027 22627 3 Skin 0.60 protein_coding synonymous_variant LOW 165T>A Pro55Pro
M0036207 BAKNIANG_00027 22660 3 Skin 0.60 protein_coding synonymous_variant LOW 198T>C Gly66Gly
M0036208 BAKNIANG_00027 22705 3 Skin 0.60 protein_coding synonymous_variant LOW 243A>G Gly81Gly
M0036209 BAKNIANG_00026 22939 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -792T>C None
M0036210 BAKNIANG_00028 23075 3 Skin 0.60 protein_coding synonymous_variant LOW 126G>C Ser42Ser
M0036211 BAKNIANG_00028 23087 3 Skin 0.60 protein_coding synonymous_variant LOW 138G>C Leu46Leu
M0036212 BAKNIANG_00028 23147 3 Skin 0.60 protein_coding synonymous_variant LOW 198A>G Val66Val
M0036213 BAKNIANG_00028 23337 3 Skin 0.60 protein_coding missense_variant MODERATE 388A>C Met130Leu
M0036214 BAKNIANG_00028 23340 3 Skin 0.60 protein_coding synonymous_variant LOW 391T>C Leu131Leu
M0036215 BAKNIANG_00028 23402 3 Skin 0.60 protein_coding synonymous_variant LOW 453T>C Val151Val
M0036216 BAKNIANG_00028 23414 3 Skin 0.60 protein_coding synonymous_variant LOW 465G>A Ala155Ala
M0036217 BAKNIANG_00028 23423 3 Skin 0.60 protein_coding synonymous_variant LOW 474A>G Val158Val
M0036218 BAKNIANG_00028 23429 3 Skin 0.60 protein_coding synonymous_variant LOW 480C>A Gly160Gly
M0036219 BAKNIANG_00028 23433 3 Skin 0.60 protein_coding synonymous_variant LOW 484T>C Leu162Leu
M0036220 BAKNIANG_00028 23435 3 Skin 0.60 protein_coding synonymous_variant LOW 486G>A Leu162Leu
M0036221 BAKNIANG_00028 23708 3 Skin 0.60 protein_coding synonymous_variant LOW 759A>G Leu253Leu
M0036222 BAKNIANG_00028 23711 3 Skin 0.60 protein_coding synonymous_variant LOW 762T>C His254His
M0036223 BAKNIANG_00028 23729 3 Skin 0.60 protein_coding synonymous_variant LOW 780A>G Pro260Pro
M0036224 BAKNIANG_00028 23738 3 Skin 0.60 protein_coding synonymous_variant LOW 789T>C His263His
M0036225 BAKNIANG_00028 23816 3 Skin 0.60 protein_coding synonymous_variant LOW 867T>C Tyr289Tyr
M0036226 BAKNIANG_00029 23909 3 Skin 0.60 protein_coding synonymous_variant LOW 696A>G Arg232Arg
M0036227 BAKNIANG_00029 23945 3 Skin 0.60 protein_coding synonymous_variant LOW 660C>T Asn220Asn
M0036228 BAKNIANG_00029 23963 3 Skin 0.60 protein_coding synonymous_variant LOW 642C>G Leu214Leu
M0036229 BAKNIANG_00029 23975 3 Skin 0.60 protein_coding synonymous_variant LOW 630G>A Glu210Glu
M0036230 BAKNIANG_00029 24002 3 Skin 0.60 protein_coding synonymous_variant LOW 603G>T Leu201Leu
M0036231 BAKNIANG_00029 24089 3 Skin 0.60 protein_coding synonymous_variant LOW 516T>C Ala172Ala
M0036232 BAKNIANG_00029 24164 3 Skin 0.60 protein_coding synonymous_variant LOW 441A>G Leu147Leu
M0036233 BAKNIANG_00029 24263 3 Skin 0.60 protein_coding synonymous_variant LOW 342A>G Ala114Ala
M0036234 BAKNIANG_00030 24715 3 Skin 0.60 protein_coding synonymous_variant LOW 969C>T Val323Val
M0036235 BAKNIANG_00030 24790 3 Skin 0.60 protein_coding synonymous_variant LOW 894A>G Pro298Pro
M0036236 BAKNIANG_00030 24901 3 Skin 0.60 protein_coding synonymous_variant LOW 783T>C Ala261Ala
M0036237 BAKNIANG_00030 25201 3 Skin 0.60 protein_coding synonymous_variant LOW 483G>A Glu161Glu
M0036238 BAKNIANG_00030 25369 3 Skin 0.60 protein_coding synonymous_variant LOW 315T>G Leu105Leu
M0036239 BAKNIANG_00026 25863 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3716G>C None
M0036240 BAKNIANG_00026 25864 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3717A>G None
M0036241 BAKNIANG_00026 25868 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3721A>C None
M0036242 BAKNIANG_00026 25872 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3725G>A None
M0036243 BAKNIANG_00026 25878 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3731G>A None
M0036244 BAKNIANG_00026 25901 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3754G>A None
M0036245 BAKNIANG_00026 25908 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3761T>C None
M0036246 BAKNIANG_00007 4642 3 Skin 0.60 protein_coding synonymous_variant LOW 426T>C Asn142Asn
M0036247 BAKNIANG_00007 4672 3 Skin 0.60 protein_coding synonymous_variant LOW 456C>T Arg152Arg
M0036248 BAKNIANG_00007 4693 3 Skin 0.60 protein_coding synonymous_variant LOW 477T>G Leu159Leu
M0036249 BAKNIANG_00008 4855 3 Skin 0.60 protein_coding synonymous_variant LOW 705T>C Gly235Gly
M0036250 BAKNIANG_00008 4900 3 Skin 0.60 protein_coding synonymous_variant LOW 660T>C Ala220Ala
M0036251 BAKNIANG_00008 4924 3 Skin 0.60 protein_coding synonymous_variant LOW 636C>T Ile212Ile
M0036252 BAKNIANG_00008 4954 3 Skin 0.60 protein_coding synonymous_variant LOW 606T>C Pro202Pro
M0036253 BAKNIANG_00008 4993 3 Skin 0.60 protein_coding synonymous_variant LOW 567C>T Gly189Gly
M0036254 BAKNIANG_00008 5002 3 Skin 0.60 protein_coding synonymous_variant LOW 558T>G Ser186Ser
M0036255 BAKNIANG_00008 5074 3 Skin 0.60 protein_coding synonymous_variant LOW 486T>C Gly162Gly
M0036256 BAKNIANG_00008 5143 3 Skin 0.60 protein_coding synonymous_variant LOW 417T>C Ser139Ser
M0036257 BAKNIANG_00008 5161 3 Skin 0.60 protein_coding synonymous_variant LOW 399T>C Asn133Asn
M0036258 BAKNIANG_00008 5173 3 Skin 0.60 protein_coding synonymous_variant LOW 387A>G Lys129Lys
M0036259 BAKNIANG_00008 5350 3 Skin 0.60 protein_coding synonymous_variant LOW 210T>G Leu70Leu
M0036260 BAKNIANG_00008 5359 3 Skin 0.60 protein_coding synonymous_variant LOW 201G>A Lys67Lys
M0036261 BAKNIANG_00008 5365 3 Skin 0.60 protein_coding synonymous_variant LOW 195A>G Lys65Lys
M0036262 BAKNIANG_00008 5386 3 Skin 0.60 protein_coding synonymous_variant LOW 174G>A Glu58Glu
M0036263 BAKNIANG_00008 5479 3 Skin 0.60 protein_coding synonymous_variant LOW 81T>C Tyr27Tyr
M0036264 BAKNIANG_00005 5570 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -1986A>T None
M0036265 BAKNIANG_00005 5670 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2086A>C None
M0036266 BAKNIANG_00005 5710 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -2126T>C None
M0036267 BAKNIANG_00009 5749 3 Skin 0.60 protein_coding synonymous_variant LOW 1179C>T Gly393Gly
M0036268 BAKNIANG_00009 5764 3 Skin 0.60 protein_coding synonymous_variant LOW 1164T>C Ser388Ser
M0036269 BAKNIANG_00009 5785 3 Skin 0.60 protein_coding synonymous_variant LOW 1143T>C Phe381Phe
M0036270 BAKNIANG_00009 5856 3 Skin 0.60 protein_coding missense_variant MODERATE 1072T>G Ser358Ala
M0036271 BAKNIANG_00009 5872 3 Skin 0.60 protein_coding synonymous_variant LOW 1056T>C Cys352Cys
M0036272 BAKNIANG_00009 5944 3 Skin 0.60 protein_coding synonymous_variant LOW 984T>C Asp328Asp
M0036273 BAKNIANG_00009 5971 3 Skin 0.60 protein_coding missense_variant MODERATE 957C>A His319Gln
M0036274 BAKNIANG_00009 6004 3 Skin 0.60 protein_coding synonymous_variant LOW 924T>C Gly308Gly
M0036275 BAKNIANG_00009 6082 3 Skin 0.60 protein_coding synonymous_variant LOW 846C>T Ile282Ile
M0036276 BAKNIANG_00009 6124 3 Skin 0.60 protein_coding synonymous_variant LOW 804C>T Ile268Ile
M0036277 BAKNIANG_00009 6157 3 Skin 0.60 protein_coding synonymous_variant LOW 771T>C Phe257Phe
M0036278 BAKNIANG_00009 6202 3 Skin 0.60 protein_coding synonymous_variant LOW 726C>T Asn242Asn
M0036279 BAKNIANG_00009 6252 3 Skin 0.60 protein_coding synonymous_variant LOW 676T>C Leu226Leu
M0036280 BAKNIANG_00009 6267 3 Skin 0.60 protein_coding missense_variant MODERATE 661T>A Cys221Ser
M0036281 BAKNIANG_00009 6288 3 Skin 0.60 protein_coding missense_variant MODERATE 640G>A Val214Ile
M0036282 BAKNIANG_00009 6297 3 Skin 0.60 protein_coding missense_variant MODERATE 631A>G Ser211Gly
M0036283 BAKNIANG_00009 6298 3 Skin 0.60 protein_coding synonymous_variant LOW 630C>A Ser210Ser
M0036284 BAKNIANG_00009 6328 3 Skin 0.60 protein_coding synonymous_variant LOW 600G>A Glu200Glu
M0036285 BAKNIANG_00009 6343 3 Skin 0.60 protein_coding synonymous_variant LOW 585C>T Arg195Arg
M0036286 BAKNIANG_00009 6346 3 Skin 0.60 protein_coding synonymous_variant LOW 582A>G Leu194Leu
M0036287 BAKNIANG_00009 6412 3 Skin 0.60 protein_coding synonymous_variant LOW 516T>C Cys172Cys
M0036288 BAKNIANG_00009 6550 3 Skin 0.60 protein_coding synonymous_variant LOW 378A>G Leu126Leu
M0036289 BAKNIANG_00009 6612 3 Skin 0.60 protein_coding synonymous_variant LOW 316T>C Leu106Leu
M0036290 BAKNIANG_00009 6787 3 Skin 0.60 protein_coding synonymous_variant LOW 141C>T Phe47Phe
M0036291 BAKNIANG_00005 6932 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3348T>C None
M0036292 BAKNIANG_00010 7311 3 Skin 0.60 protein_coding synonymous_variant LOW 75C>T Ser25Ser
M0036293 BAKNIANG_00010 7347 3 Skin 0.60 protein_coding synonymous_variant LOW 111A>T Ile37Ile
M0036294 BAKNIANG_00010 7383 3 Skin 0.60 protein_coding synonymous_variant LOW 147C>T Leu49Leu
M0036295 BAKNIANG_00010 7422 3 Skin 0.60 protein_coding synonymous_variant LOW 186T>C Ala62Ala
M0036296 BAKNIANG_00011 7568 3 Skin 0.60 protein_coding missense_variant MODERATE 21A>T Glu7Asp
M0036297 BAKNIANG_00011 7607 3 Skin 0.60 protein_coding synonymous_variant LOW 60C>T Ser20Ser
M0036298 BAKNIANG_00011 7815 3 Skin 0.60 protein_coding missense_variant MODERATE 268G>A Gly90Ser
M0036299 BAKNIANG_00011 7835 3 Skin 0.60 protein_coding synonymous_variant LOW 288T>C Gly96Gly
M0036300 BAKNIANG_00005 7856 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -4272T>C None
M0036301 BAKNIANG_00012 7938 3 Skin 0.60 protein_coding missense_variant MODERATE 41G>C Arg14Thr
M0036302 BAKNIANG_00012 7961 3 Skin 0.60 protein_coding missense_variant MODERATE 64G>A Ala22Thr
M0036303 BAKNIANG_00012 7962 3 Skin 0.60 protein_coding missense_variant MODERATE 65C>G Ala22Gly
M0036304 BAKNIANG_00012 8017 3 Skin 0.60 protein_coding synonymous_variant LOW 120C>T Ser40Ser
M0036305 BAKNIANG_00013 8412 3 Skin 0.60 protein_coding synonymous_variant LOW 810T>C Tyr270Tyr
M0036306 BAKNIANG_00008 9290 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3731T>C None
M0036307 BAKNIANG_00008 9372 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3813T>G None
M0036308 BAKNIANG_00008 9377 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3818T>G None
M0036309 BAKNIANG_00008 9378 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3819T>G None
M0036310 BAKNIANG_00008 9379 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3820G>A None
M0036311 BAKNIANG_00008 9386 3 Skin 0.60 protein_coding upstream_gene_variant MODIFIER -3827A>G None
M0036312 BAKNIANG_00014 9612 3 Skin 0.60 protein_coding synonymous_variant LOW 207T>C Thr69Thr
M0036313 BAKNIANG_00014 9684 3 Skin 0.60 protein_coding synonymous_variant LOW 279G>C Leu93Leu
M0036314 BAKNIANG_00014 9733 3 Skin 0.60 protein_coding missense_variant MODERATE 328A>G Asn110Asp
M0036315 BAKNIANG_00014 9796 3 Skin 0.60 protein_coding synonymous_variant LOW 391T>C Leu131Leu
M0036316 BAKNIANG_00014 9810 3 Skin 0.60 protein_coding synonymous_variant LOW 405A>G Gln135Gln
M0036317 BAKNIANG_00014 9939 3 Skin 0.60 protein_coding missense_variant MODERATE 534A>T Lys178Asn
M0036318 BAKNIANG_00014 10002 3 Skin 0.60 protein_coding synonymous_variant LOW 597T>C Ser199Ser
M0036319 BAKNIANG_00014 10161 3 Skin 0.60 protein_coding synonymous_variant LOW 756G>A Lys252Lys
M0036320 BAKNIANG_00015 10360 3 Skin 0.60 protein_coding synonymous_variant LOW 924T>C Gly308Gly
M0036321 BAKNIANG_00015 10390 3 Skin 0.60 protein_coding synonymous_variant LOW 894A>G Ala298Ala
M0036322 BAKNIANG_00015 10399 3 Skin 0.60 protein_coding synonymous_variant LOW 885T>C Ile295Ile
M0036323 BAKNIANG_00015 10405 3 Skin 0.60 protein_coding synonymous_variant LOW 879G>T Arg293Arg
M0036324 BAKNIANG_00015 10426 3 Skin 0.60 protein_coding synonymous_variant LOW 858T>C His286His
M0036325 BAKNIANG_00015 10498 3 Skin 0.60 protein_coding synonymous_variant LOW 786A>G Gln262Gln
M0036326 BAKNIANG_00015 10543 3 Skin 0.60 protein_coding synonymous_variant LOW 741G>A Ala247Ala
M0036327 BAKNIANG_00015 10585 3 Skin 0.60 protein_coding synonymous_variant LOW 699A>G Thr233Thr
M0036328 BAKNIANG_00015 10612 3 Skin 0.60 protein_coding synonymous_variant LOW 672T>G Pro224Pro
M0036329 BAKNIANG_00015 10636 3 Skin 0.60 protein_coding synonymous_variant LOW 648C>G Val216Val
M0036330 BAKNIANG_00015 10669 3 Skin 0.60 protein_coding synonymous_variant LOW 615G>A Gly205Gly
M0036331 BAKNIANG_00015 10675 3 Skin 0.60 protein_coding synonymous_variant LOW 609G>A Glu203Glu
M0036332 BAKNIANG_00015 10717 3 Skin 0.60 protein_coding synonymous_variant LOW 567C>G Leu189Leu
M0036333 BAKNIANG_00015 10735 3 Skin 0.60 protein_coding synonymous_variant LOW 549A>G Leu183Leu
M0036334 BAKNIANG_00015 10765 3 Skin 0.60 protein_coding synonymous_variant LOW 519A>G Arg173Arg
M0036335 BAKNIANG_00015 10767 3 Skin 0.60 protein_coding synonymous_variant LOW 517A>C Arg173Arg
M0036336 BAKNIANG_00015 10894 3 Skin 0.60 protein_coding synonymous_variant LOW 390T>C Ser130Ser
M0036337 BAKNIANG_00015 10912 3 Skin 0.60 protein_coding synonymous_variant LOW 372A>G Arg124Arg
M0036338 BAKNIANG_00015 10918 3 Skin 0.60 protein_coding synonymous_variant LOW 366T>C Leu122Leu
M0036339 BAKNIANG_00015 10939 3 Skin 0.60 protein_coding synonymous_variant LOW 345G>A Leu115Leu
M0036340 BAKNIANG_00015 10954 3 Skin 0.60 protein_coding synonymous_variant LOW 330T>C Asp110Asp
M0036341 BAKNIANG_00015 11017 3 Skin 0.60 protein_coding synonymous_variant LOW 267T>G Pro89Pro
M0036342 BAKNIANG_00015 11053 3 Skin 0.60 protein_coding synonymous_variant LOW 231C>T Arg77Arg
M0036343 BAKNIANG_00015 11101 3 Skin 0.60 protein_coding synonymous_variant LOW 183A>G Val61Val
M0036344 BAKNIANG_00015 11107 3 Skin 0.60 protein_coding synonymous_variant LOW 177T>C Gly59Gly
M0036345 BAKNIANG_00015 11151 3 Skin 0.60 protein_coding missense_variant MODERATE 133G>A Gly45Ser
M0036346 BAKNIANG_00015 11200 3 Skin 0.60 protein_coding synonymous_variant LOW 84A>T Ala28Ala
M0036347 BAKNIANG_00015 11223 3 Skin 0.60 protein_coding synonymous_variant LOW 61T>C Leu21Leu
M0036348 BAKNIANG_00015 11233 3 Skin 0.60 protein_coding synonymous_variant LOW 51A>G Val17Val
M0036349 BAKNIANG_00015 11239 3 Skin 0.60 protein_coding synonymous_variant LOW 45T>C Leu15Leu
M0036350 BAKNIANG_00015 11242 3 Skin 0.60 protein_coding synonymous_variant LOW 42T>C Cys14Cys
M0036351 BAKNIANG_00015 11256 3 Skin 0.60 protein_coding synonymous_variant LOW 28C>T Leu10Leu
M0036352 BAKNIANG_00016 11331 3 Skin 0.60 protein_coding synonymous_variant LOW 645C>G Val215Val
M0036353 BAKNIANG_00016 11373 3 Skin 0.60 protein_coding synonymous_variant LOW 603G>A Leu201Leu
M0036354 BAKNIANG_00016 11400 3 Skin 0.60 protein_coding synonymous_variant LOW 576A>C Pro192Pro
M0036355 BAKNIANG_00016 11541 3 Skin 0.60 protein_coding synonymous_variant LOW 435T>C Thr145Thr
M0036356 BAKNIANG_00016 11616 3 Skin 0.60 protein_coding synonymous_variant LOW 360A>G Val120Val
M0036357 BAKNIANG_00016 11643 3 Skin 0.60 protein_coding synonymous_variant LOW 333T>A Ile111Ile
M0036358 BAKNIANG_00016 11664 3 Skin 0.60 protein_coding synonymous_variant LOW 312C>T Phe104Phe
M0036359 BAKNIANG_00016 11688 3 Skin 0.60 protein_coding synonymous_variant LOW 288A>G Val96Val
M0036360 BAKNIANG_00016 11748 3 Skin 0.60 protein_coding synonymous_variant LOW 228T>C Ile76Ile
M0036361 BAKNIANG_00016 11780 3 Skin 0.60 protein_coding synonymous_variant LOW 196C>T Leu66Leu
M0036362 BAKNIANG_00016 11819 3 Skin 0.60 protein_coding synonymous_variant LOW 157C>T Leu53Leu
M0036363 BAKNIANG_00016 11829 3 Skin 0.60 protein_coding synonymous_variant LOW 147T>C Ser49Ser
M0036364 BAKNIANG_00016 11880 3 Skin 0.60 protein_coding synonymous_variant LOW 96T>C Phe32Phe
M0036365 BAKNIANG_00017 12137 3 Skin 0.60 protein_coding synonymous_variant LOW 612T>C Val204Val
M0036366 BAKNIANG_00017 12253 3 Skin 0.60 protein_coding synonymous_variant LOW 496T>C Leu166Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group
BAKNIANG_00015 Tungsten (W), Molybdenum (Mo) 81 2.7e-163 1 352 1.0000 1.0000 experiment
BAKNIANG_00016 Tungsten (W), Molybdenum (Mo) 90 1.1e-112 1 229 1.0000 1.0000 experiment
BAKNIANG_00017 Tungsten (W), Molybdenum (Mo) 82.7 5.1e-119 1 255 0.9884 0.9922 experiment
BAKNIANG_00019 Tungsten (W), Molybdenum (Mo) 82.1 5.2e-119 1 262 1.0000 1.0000 experiment
BAKNIANG_00028 Zinc (Zn) 74.4 3.4e-133 1 311 1.0032 1.0000 experiment
BAKNIANG_00015 Tungsten (W), Molybdenum (Mo) 83 3.2e-165 1 352 1.0000 1.0000 prediction
BAKNIANG_00016 Tungsten (W), Molybdenum (Mo) 100 3.7e-122 1 229 1.0000 1.0000 prediction
BAKNIANG_00017 Tungsten (W), Molybdenum (Mo) 89.1 6.6e-128 1 257 0.9961 1.0000 prediction
BAKNIANG_00019 Tungsten (W), Molybdenum (Mo) 100 3.3e-143 1 262 1.0000 1.0000 prediction
BAKNIANG_00028 Zinc (Zn) 75.4 1.5e-134 1 311 1.0032 1.0000 prediction






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant
BAKNIANG_00008 PHI:11409 ycgE 92.1 1.4e-130 1 242 0.9918 0.9918 rodents pneumonia HTH-type transcriptional regulator reduced virulence
BAKNIANG_00023 PHI:6269 galK 89.8 3.5e-200 1 382 1.0000 1.0000 rodents urinary tract infection galactokinase reduced virulence






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
BAKNIANG_00001 QII34243.1|CE8 100 7.38e-224 1 310 1 0.726





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
BAKNIANG_00015 3.A.1.8.1 81 1e-161 1 352 1.0000 1.3696 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BAKNIANG_00016 3.A.1.8.1 90 4.1e-111 1 229 1.0000 0.8911 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BAKNIANG_00017 3.A.1.8.1 82.7 1.9e-117 1 255 0.9884 0.9922 3 Primary Active Transporters 3.A P-P-bond-hydrolysis-driven transporters 3.A.1 The ATP-binding Cassette (ABC) Superfamily
BAKNIANG_00028 2.A.4.1.4 74.4 1.3e-131 1 311 0.9968 1.0000 2 Electrochemical Potential-driven Transporters 2.A Porters (uniporters, symporters, antiporters) 2.A.4 The Cation Diffusion Facilitator (CDF) Family
BAKNIANG_00029 4.B.1.1.1 89.5 1.5e-119 1 239 1.0000 1.0000 4 Group Translocators 4.B Nicotinamide ribonucleoside uptake transporters 4.B.1 The Nicotinamide Ribonucleoside (NR) Uptake Permease (PnuC) Family