Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2302
  Reference Plasmid   1111525849766006_bin.9_new__k141_115779
  Reference Plasmid Size   4015
  Reference Plasmid GC Content   0.59
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0036896 BNEMIJPN_00001 1226 3 Skin 0.43 protein_coding synonymous_variant LOW 1191A>G Ala397Ala
M0036897 BNEMIJPN_00001 1235 3 Skin 0.43 protein_coding synonymous_variant LOW 1200C>T Arg400Arg
M0036898 BNEMIJPN_00001 1255 3 Skin 0.43 protein_coding missense_variant MODERATE 1220C>A Thr407Asn
M0036899 BNEMIJPN_00001 1257 3 Skin 0.43 protein_coding missense_variant MODERATE 1222A>G Asn408Asp
M0036900 BNEMIJPN_00001 1260 3 Skin 0.43 protein_coding missense_variant MODERATE 1225G>A Val409Ile
M0036901 BNEMIJPN_00001 1283 3 Skin 0.43 protein_coding synonymous_variant LOW 1248T>C Val416Val
M0036902 BNEMIJPN_00002 1309 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -224A>T None
M0036903 BNEMIJPN_00002 1336 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -197G>A None
M0036904 BNEMIJPN_00003 2269 3 Skin 0.43 protein_coding synonymous_variant LOW 321A>G Ala107Ala
M0036905 BNEMIJPN_00003 2281 3 Skin 0.43 protein_coding synonymous_variant LOW 333A>G Gln111Gln
M0036906 BNEMIJPN_00005 2857 5 Skin 0.71 protein_coding missense_variant MODERATE 1096A>G Thr366Ala
M0036907 BNEMIJPN_00005 3067 5 Skin 0.71 protein_coding missense_variant MODERATE 886C>G Arg296Gly
M0036908 BNEMIJPN_00005 3159 5 Skin 0.71 protein_coding missense_variant MODERATE 794A>T His265Leu
M0036909 BNEMIJPN_00005 3207 4 Skin 0.57 protein_coding missense_variant MODERATE 746G>A Arg249Gln
M0036910 BNEMIJPN_00005 3235 3 Skin 0.43 protein_coding missense_variant MODERATE 718T>C Cys240Arg
M0036911 BNEMIJPN_00005 3802 4 Skin 0.57 protein_coding missense_variant MODERATE 151A>G Met51Val
M0036912 BNEMIJPN_00002 1401 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -132T>C None
M0036913 BNEMIJPN_00002 1413 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -120T>C None
M0036914 BNEMIJPN_00002 1424 3 Skin 0.43 protein_coding upstream_gene_variant MODIFIER -109A>T None
M0036915 BNEMIJPN_00002 1685 3 Skin 0.43 protein_coding synonymous_variant LOW 153C>A Ile51Ile
M0036916 BNEMIJPN_00002 1688 3 Skin 0.43 protein_coding synonymous_variant LOW 156G>C Gly52Gly
M0036917 BNEMIJPN_00002 1697 3 Skin 0.43 protein_coding synonymous_variant LOW 165G>A Glu55Glu
M0036918 BNEMIJPN_00004 2490 3 Skin 0.43 protein_coding synonymous_variant LOW 165C>T Asp55Asp
M0036919 BNEMIJPN_00004 2496 3 Skin 0.43 protein_coding synonymous_variant LOW 171T>C Ser57Ser
M0036920 BNEMIJPN_00005 2643 6 Skin 0.86 protein_coding missense_variant MODERATE 1310A>G Asn437Ser
M0036921 BNEMIJPN_00005 2647 6 Skin 0.86 protein_coding missense_variant MODERATE 1306A>G Ile436Val
M0036922 BNEMIJPN_00005 2965 5 Skin 0.71 protein_coding missense_variant MODERATE 988A>G Thr330Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term