Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2315
  Reference Plasmid   1111525849766308_bin.2__k141_118071
  Reference Plasmid Size   49381
  Reference Plasmid GC Content   0.64
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0037011 MEAIPMKD_00001 45 6 Skin 0.07 protein_coding upstream_gene_variant MODIFIER -70C>T None
M0037012 MEAIPMKD_00001 201 6 Skin 0.07 protein_coding synonymous_variant LOW 87C>G Ala29Ala
M0037013 MEAIPMKD_00001 228 6 Skin 0.07 protein_coding synonymous_variant LOW 114T>C Asp38Asp
M0037014 MEAIPMKD_00003 3021 4 Skin 0.04 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0037015 MEAIPMKD_00003 3039 4 Skin 0.04 protein_coding synonymous_variant LOW 345C>G Leu115Leu
M0037016 MEAIPMKD_00003 3042 4 Skin 0.04 protein_coding synonymous_variant LOW 342A>G Glu114Glu
M0037017 MEAIPMKD_00003 3390 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -7G>A None
M0037018 MEAIPMKD_00003 3424 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -41G>T None
M0037019 MEAIPMKD_00003 3427 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -44A>C None
M0037020 MEAIPMKD_00003 3437 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -54G>A None
M0037021 MEAIPMKD_00003 3439 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -56C>G None
M0037022 MEAIPMKD_00003 3441 4 Skin 0.04 protein_coding upstream_gene_variant MODIFIER -58G>C None
M0037023 MEAIPMKD_00029 28631 26 Skin 0.29 protein_coding synonymous_variant LOW 1137G>T Thr379Thr
M0037024 MEAIPMKD_00023 29768 20 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4437T>C None
M0037025 MEAIPMKD_00023 29769 20 Skin 0.22 protein_coding upstream_gene_variant MODIFIER -4438T>C None
M0037026 MEAIPMKD_00030 29989 24 Skin 0.27 protein_coding missense_variant MODERATE 686A>C Asn229Thr
M0037027 MEAIPMKD_00030 30561 3 Skin 0.03 protein_coding synonymous_variant LOW 114G>C Gly38Gly
M0037028 MEAIPMKD_00030 30576 3 Skin 0.03 protein_coding synonymous_variant LOW 99A>C Ala33Ala
M0037029 MEAIPMKD_00030 30582 3 Skin 0.03 protein_coding synonymous_variant LOW 93G>A Lys31Lys
M0037030 MEAIPMKD_00030 30585 3 Skin 0.03 protein_coding synonymous_variant LOW 90C>G Leu30Leu
M0037031 MEAIPMKD_00030 30609 4 Skin 0.04 protein_coding synonymous_variant LOW 66C>A Ala22Ala
M0037032 MEAIPMKD_00030 30633 4 Skin 0.04 protein_coding synonymous_variant LOW 42G>C Val14Val
M0037033 MEAIPMKD_00033 33388 4 Skin 0.04 protein_coding synonymous_variant LOW 384C>A Thr128Thr
M0037034 MEAIPMKD_00033 33418 4 Skin 0.04 protein_coding synonymous_variant LOW 414G>A Glu138Glu
M0037035 MEAIPMKD_00033 33421 4 Skin 0.04 protein_coding synonymous_variant LOW 417T>C Arg139Arg
M0037036 MEAIPMKD_00033 33445 4 Skin 0.04 protein_coding synonymous_variant LOW 441G>A Gln147Gln
M0037037 MEAIPMKD_00033 33457 4 Skin 0.04 protein_coding synonymous_variant LOW 453T>C Tyr151Tyr
M0037038 MEAIPMKD_00033 33460 4 Skin 0.04 protein_coding synonymous_variant LOW 456G>C Gly152Gly
M0037039 MEAIPMKD_00033 33490 4 Skin 0.04 protein_coding synonymous_variant LOW 486C>G Val162Val
M0037040 MEAIPMKD_00033 33493 4 Skin 0.04 protein_coding synonymous_variant LOW 489T>C Ile163Ile
M0037041 MEAIPMKD_00033 33496 4 Skin 0.04 protein_coding synonymous_variant LOW 492G>C Pro164Pro
M0037042 MEAIPMKD_00033 33501 4 Skin 0.04 protein_coding missense_variant MODERATE 497A>G Lys166Arg
M0037043 MEAIPMKD_00033 33505 4 Skin 0.04 protein_coding synonymous_variant LOW 501C>G Pro167Pro
M0037044 MEAIPMKD_00033 33511 5 Skin 0.06 protein_coding synonymous_variant LOW 507C>G Leu169Leu
M0037045 MEAIPMKD_00033 33532 5 Skin 0.06 protein_coding synonymous_variant LOW 528G>A Gly176Gly
M0037046 MEAIPMKD_00033 33592 4 Skin 0.04 protein_coding synonymous_variant LOW 588C>T Ile196Ile
M0037047 MEAIPMKD_00033 33601 4 Skin 0.04 protein_coding synonymous_variant LOW 597A>G Thr199Thr
M0037048 MEAIPMKD_00033 33637 4 Skin 0.04 protein_coding synonymous_variant LOW 633C>T Arg211Arg
M0037049 MEAIPMKD_00033 33640 4 Skin 0.04 protein_coding synonymous_variant LOW 636T>C Asp212Asp
M0037050 MEAIPMKD_00046 46749 4 Skin 0.04 protein_coding synonymous_variant LOW 549A>G Gly183Gly
M0037051 MEAIPMKD_00046 48429 15 Skin 0.17 protein_coding synonymous_variant LOW 2229C>T Gly743Gly
M0037052 MEAIPMKD_00046 48438 15 Skin 0.17 protein_coding synonymous_variant LOW 2238C>G Leu746Leu
M0037053 MEAIPMKD_00046 48444 15 Skin 0.17 protein_coding synonymous_variant LOW 2244C>T Asn748Asn
M0037054 MEAIPMKD_00046 48462 15 Skin 0.17 protein_coding synonymous_variant LOW 2262C>T Asn754Asn
M0037055 MEAIPMKD_00046 48486 15 Skin 0.17 protein_coding synonymous_variant LOW 2286A>G Glu762Glu
M0037056 MEAIPMKD_00025 27005 3 Skin 0.03 protein_coding synonymous_variant LOW 27G>C Ala9Ala
M0037057 MEAIPMKD_00025 27022 3 Skin 0.03 protein_coding missense_variant MODERATE 10A>G Ser4Gly
M0037058 MEAIPMKD_00025 27023 3 Skin 0.03 protein_coding synonymous_variant LOW 9C>G Gly3Gly
M0037059 MEAIPMKD_00025 27026 3 Skin 0.03 protein_coding synonymous_variant LOW 6G>A Gln2Gln
M0037060 MEAIPMKD_00021 27032 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3153A>G None
M0037061 MEAIPMKD_00021 27034 3 Skin 0.03 protein_coding upstream_gene_variant MODIFIER -3155C>T None
M0037062 MEAIPMKD_00026 27080 4 Skin 0.04 protein_coding synonymous_variant LOW 750C>A Gly250Gly
M0037063 MEAIPMKD_00026 27086 4 Skin 0.04 protein_coding synonymous_variant LOW 744C>T Ile248Ile
M0037064 MEAIPMKD_00026 27098 4 Skin 0.04 protein_coding synonymous_variant LOW 732T>C Phe244Phe
M0037065 MEAIPMKD_00026 27125 4 Skin 0.04 protein_coding synonymous_variant LOW 705G>C Pro235Pro
M0037066 MEAIPMKD_00026 27134 4 Skin 0.04 protein_coding synonymous_variant LOW 696G>A Glu232Glu
M0037067 MEAIPMKD_00026 27140 4 Skin 0.04 protein_coding synonymous_variant LOW 690T>C Asn230Asn
M0037068 MEAIPMKD_00046 46623 3 Skin 0.03 protein_coding synonymous_variant LOW 423C>T Asn141Asn
M0037069 MEAIPMKD_00046 46647 3 Skin 0.03 protein_coding synonymous_variant LOW 447C>G Arg149Arg
M0037070 MEAIPMKD_00046 46659 3 Skin 0.03 protein_coding synonymous_variant LOW 459G>A Val153Val
M0037071 MEAIPMKD_00046 46674 3 Skin 0.03 protein_coding synonymous_variant LOW 474C>G Gly158Gly
M0037072 MEAIPMKD_00046 48384 14 Skin 0.16 protein_coding synonymous_variant LOW 2184C>G Val728Val
M0037073 MEAIPMKD_00046 46776 4 Skin 0.04 protein_coding synonymous_variant LOW 576T>C Tyr192Tyr
M0037074 MEAIPMKD_00046 46863 3 Skin 0.03 protein_coding synonymous_variant LOW 663C>T Asp221Asp
M0037075 MEAIPMKD_00047 48659 4 Skin 0.04 protein_coding synonymous_variant LOW 492A>G Glu164Glu
M0037076 MEAIPMKD_00047 48673 4 Skin 0.04 protein_coding missense_variant MODERATE 478A>T Met160Leu
M0037077 MEAIPMKD_00047 48713 4 Skin 0.04 protein_coding synonymous_variant LOW 438A>G Glu146Glu
M0037078 MEAIPMKD_00047 48731 4 Skin 0.04 protein_coding synonymous_variant LOW 420C>T Arg140Arg
M0037079 MEAIPMKD_00047 48734 4 Skin 0.04 protein_coding synonymous_variant LOW 417T>C Asn139Asn
M0037080 MEAIPMKD_00047 48758 4 Skin 0.04 protein_coding synonymous_variant LOW 393T>C His131His
M0037081 MEAIPMKD_00023 25089 5 Skin 0.06 protein_coding synonymous_variant LOW 243C>G Ser81Ser
M0037082 MEAIPMKD_00029 29361 3 Skin 0.03 protein_coding missense_variant MODERATE 407C>A Ala136Glu
M0037083 MEAIPMKD_00045 45145 3 Skin 0.03 protein_coding synonymous_variant LOW 297T>C Val99Val
M0037084 MEAIPMKD_00040 41902 3 Skin 0.03 protein_coding synonymous_variant LOW 774T>C Asp258Asp
M0037085 MEAIPMKD_00040 41914 3 Skin 0.03 protein_coding synonymous_variant LOW 786C>T Tyr262Tyr
M0037086 MEAIPMKD_00040 41923 3 Skin 0.03 protein_coding synonymous_variant LOW 795G>C Pro265Pro
M0037087 MEAIPMKD_00040 41956 4 Skin 0.04 protein_coding synonymous_variant LOW 828T>C Asn276Asn
M0037088 MEAIPMKD_00045 45097 3 Skin 0.03 protein_coding synonymous_variant LOW 249G>C Gly83Gly
M0037089 MEAIPMKD_00046 46732 3 Skin 0.03 protein_coding missense_variant MODERATE 532G>C Glu178Gln
M0037090 MEAIPMKD_00046 46746 3 Skin 0.03 protein_coding synonymous_variant LOW 546C>T Gly182Gly
M0037091 MEAIPMKD_00013 16150 6 Skin 0.07 protein_coding synonymous_variant LOW 108G>C Ala36Ala
M0037092 MEAIPMKD_00013 16174 6 Skin 0.07 protein_coding synonymous_variant LOW 84A>G Glu28Glu
M0037093 MEAIPMKD_00042 42606 3 Skin 0.03 protein_coding synonymous_variant LOW 48C>G Leu16Leu
M0037094 MEAIPMKD_00042 42642 3 Skin 0.03 protein_coding synonymous_variant LOW 84T>C Asp28Asp
M0037095 MEAIPMKD_00042 42654 3 Skin 0.03 protein_coding synonymous_variant LOW 96G>C Pro32Pro
M0037096 MEAIPMKD_00042 42657 3 Skin 0.03 protein_coding synonymous_variant LOW 99C>T Ile33Ile
M0037097 MEAIPMKD_00042 42663 3 Skin 0.03 protein_coding synonymous_variant LOW 105C>G Ala35Ala
M0037098 MEAIPMKD_00042 42666 3 Skin 0.03 protein_coding synonymous_variant LOW 108G>C Gly36Gly
M0037099 MEAIPMKD_00042 42669 3 Skin 0.03 protein_coding synonymous_variant LOW 111C>T Tyr37Tyr
M0037100 MEAIPMKD_00042 42684 3 Skin 0.03 protein_coding missense_variant MODERATE 126A>C Glu42Asp
M0037101 MEAIPMKD_00042 42705 3 Skin 0.03 protein_coding synonymous_variant LOW 147T>C Pro49Pro
M0037102 MEAIPMKD_00042 42711 3 Skin 0.03 protein_coding synonymous_variant LOW 153T>C Val51Val






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term