Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2320
  Reference Plasmid   1111525849766308_bin.2__k141_52430
  Reference Plasmid Size   25541
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0037172 OPMDPFCK_00017 17098 3 Skin 0.06 protein_coding synonymous_variant LOW 726C>T His242His
M0037173 OPMDPFCK_00017 17105 3 Skin 0.06 protein_coding missense_variant MODERATE 719C>G Thr240Ser
M0037174 OPMDPFCK_00017 17119 3 Skin 0.06 protein_coding synonymous_variant LOW 705G>A Lys235Lys
M0037175 OPMDPFCK_00017 17160 3 Skin 0.06 protein_coding missense_variant MODERATE 664C>T His222Tyr
M0037176 OPMDPFCK_00017 17167 3 Skin 0.06 protein_coding synonymous_variant LOW 657C>T Asp219Asp
M0037177 OPMDPFCK_00017 17180 3 Skin 0.06 protein_coding missense_variant MODERATE 644A>G Asn215Ser
M0037178 OPMDPFCK_00017 17200 3 Skin 0.06 protein_coding synonymous_variant LOW 624G>A Glu208Glu
M0037179 OPMDPFCK_00017 17266 22 Skin 0.46 protein_coding synonymous_variant LOW 558C>T Tyr186Tyr
M0037180 OPMDPFCK_00005 4142 4 Skin 0.08 protein_coding synonymous_variant LOW 172C>T Leu58Leu
M0037181 OPMDPFCK_00005 4143 4 Skin 0.08 protein_coding synonymous_variant LOW 171C>G Ala57Ala
M0037182 OPMDPFCK_00005 4155 4 Skin 0.08 protein_coding synonymous_variant LOW 159A>C Gly53Gly
M0037183 OPMDPFCK_00005 4185 4 Skin 0.08 protein_coding synonymous_variant LOW 129G>C Arg43Arg
M0037184 OPMDPFCK_00005 4200 4 Skin 0.08 protein_coding synonymous_variant LOW 114C>T Ile38Ile
M0037185 OPMDPFCK_00006 4528 4 Skin 0.08 protein_coding synonymous_variant LOW 357C>G Arg119Arg
M0037186 OPMDPFCK_00007 5221 8 Skin 0.17 protein_coding synonymous_variant LOW 207C>T Tyr69Tyr
M0037187 OPMDPFCK_00004 2472 3 Skin 0.06 protein_coding synonymous_variant LOW 642A>G Ala214Ala
M0037188 OPMDPFCK_00004 2475 3 Skin 0.06 protein_coding synonymous_variant LOW 639G>A Ala213Ala
M0037189 OPMDPFCK_00006 4600 3 Skin 0.06 protein_coding synonymous_variant LOW 285T>C Gly95Gly
M0037190 OPMDPFCK_00006 4624 3 Skin 0.06 protein_coding synonymous_variant LOW 261C>T Ile87Ile
M0037191 OPMDPFCK_00006 4627 3 Skin 0.06 protein_coding synonymous_variant LOW 258G>C Ala86Ala
M0037192 OPMDPFCK_00006 4636 3 Skin 0.06 protein_coding synonymous_variant LOW 249T>C Gly83Gly
M0037193 OPMDPFCK_00022 23542 3 Skin 0.06 protein_coding synonymous_variant LOW 45T>C Gly15Gly
M0037194 OPMDPFCK_00003 1915 4 Skin 0.08 protein_coding synonymous_variant LOW 303G>C Ala101Ala
M0037195 OPMDPFCK_00003 1917 4 Skin 0.08 protein_coding missense_variant MODERATE 301G>T Ala101Ser
M0037196 OPMDPFCK_00003 1942 4 Skin 0.08 protein_coding synonymous_variant LOW 276C>T Tyr92Tyr
M0037197 OPMDPFCK_00003 1960 4 Skin 0.08 protein_coding synonymous_variant LOW 258G>T Leu86Leu
M0037198 OPMDPFCK_00003 1969 4 Skin 0.08 protein_coding missense_variant MODERATE 249C>G Asp83Glu
M0037199 OPMDPFCK_00003 1974 4 Skin 0.08 protein_coding missense_variant MODERATE 244C>G Leu82Val
M0037200 OPMDPFCK_00003 1975 4 Skin 0.08 protein_coding synonymous_variant LOW 243T>C Phe81Phe
M0037201 OPMDPFCK_00003 1987 4 Skin 0.08 protein_coding synonymous_variant LOW 231T>C Ile77Ile
M0037202 OPMDPFCK_00005 4245 3 Skin 0.06 protein_coding synonymous_variant LOW 69G>C Leu23Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term