Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2328
  Reference Plasmid   1111525849766731_bin.17__k141_411582
  Reference Plasmid Size   33891
  Reference Plasmid GC Content   0.70
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0037517 CIAIFOJE_00011 14259 22 Skin 0.55 protein_coding missense_variant MODERATE 605C>A Pro202His
M0037518 CIAIFOJE_00009 17074 25 Skin 0.63 protein_coding downstream_gene_variant MODIFIER *4212T>C None
M0037519 CIAIFOJE_00025 26755 17 Skin 0.43 protein_coding missense_variant MODERATE 944T>C Met315Thr
M0037520 CIAIFOJE_00009 12611 21 Skin 0.53 protein_coding missense_variant MODERATE 1204A>G Met402Val
M0037521 CIAIFOJE_00025 27148 14 Skin 0.35 protein_coding missense_variant MODERATE 551C>A Ala184Asp
M0037522 CIAIFOJE_00025 27164 14 Skin 0.35 protein_coding missense_variant MODERATE 535C>G His179Asp
M0037523 CIAIFOJE_00025 27172 14 Skin 0.35 protein_coding missense_variant MODERATE 527C>G Ala176Gly
M0037524 CIAIFOJE_00025 27187 14 Skin 0.35 protein_coding missense_variant MODERATE 512C>A Ser171Tyr
M0037525 CIAIFOJE_00025 27190 14 Skin 0.35 protein_coding missense_variant MODERATE 509C>G Ala170Gly
M0037526 CIAIFOJE_00025 27203 14 Skin 0.35 protein_coding missense_variant MODERATE 496C>A Pro166Thr






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term
CIAIFOJE_00017 3.E.2.1.2 72.2 1.3e-139 1 317 0.9754 1.2201 3 Primary Active Transporters 3.E Light absorption-driven transporters 3.E.2 The Photosynthetic Reaction Center (PRC) Family
CIAIFOJE_00018 3.E.2.1.2 76.2 2.5e-131 1 273 0.9964 1.0849 3 Primary Active Transporters 3.E Light absorption-driven transporters 3.E.2 The Photosynthetic Reaction Center (PRC) Family