Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2333
  Reference Plasmid   1111525849767143_bin.12__k141_51904
  Reference Plasmid Size   9887
  Reference Plasmid GC Content   0.68
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0037561 CNEJDKLB_00001 422 3 Skin 0.16 protein_coding synonymous_variant LOW 285T>A Gly95Gly
M0037562 CNEJDKLB_00001 461 8 Skin 0.42 protein_coding synonymous_variant LOW 246T>C His82His
M0037563 CNEJDKLB_00001 473 7 Skin 0.37 protein_coding synonymous_variant LOW 234T>C Arg78Arg
M0037564 CNEJDKLB_00001 502 7 Skin 0.37 protein_coding missense_variant MODERATE 205A>C Met69Leu
M0037565 CNEJDKLB_00001 517 10 Skin 0.53 protein_coding synonymous_variant LOW 190A>C Arg64Arg
M0037566 CNEJDKLB_00001 524 10 Skin 0.53 protein_coding synonymous_variant LOW 183T>C Arg61Arg
M0037567 CNEJDKLB_00001 611 10 Skin 0.53 protein_coding synonymous_variant LOW 96G>A Arg32Arg
M0037568 CNEJDKLB_00001 619 10 Skin 0.53 protein_coding synonymous_variant LOW 88T>C Leu30Leu
M0037569 CNEJDKLB_00001 650 4 Skin 0.21 protein_coding synonymous_variant LOW 57A>G Glu19Glu
M0037570 CNEJDKLB_00001 695 12 Skin 0.63 protein_coding synonymous_variant LOW 12G>A Glu4Glu
M0037571 CNEJDKLB_00002 788 7 Skin 0.37 protein_coding missense_variant MODERATE 1508A>G Glu503Gly
M0037572 CNEJDKLB_00002 826 13 Skin 0.68 protein_coding synonymous_variant LOW 1470T>C Ser490Ser
M0037573 CNEJDKLB_00002 838 13 Skin 0.68 protein_coding synonymous_variant LOW 1458T>C Ser486Ser
M0037574 CNEJDKLB_00002 898 13 Skin 0.68 protein_coding synonymous_variant LOW 1398A>G Arg466Arg
M0037575 CNEJDKLB_00002 916 5 Skin 0.26 protein_coding synonymous_variant LOW 1380T>C Arg460Arg
M0037576 CNEJDKLB_00002 922 10 Skin 0.53 protein_coding synonymous_variant LOW 1374G>C Val458Val
M0037577 CNEJDKLB_00002 934 12 Skin 0.63 protein_coding synonymous_variant LOW 1362T>C Ser454Ser
M0037578 CNEJDKLB_00002 1051 11 Skin 0.58 protein_coding synonymous_variant LOW 1245T>A Ala415Ala
M0037579 CNEJDKLB_00002 1056 12 Skin 0.63 protein_coding missense_variant MODERATE 1240A>C Met414Leu
M0037580 CNEJDKLB_00002 1191 11 Skin 0.58 protein_coding missense_variant MODERATE 1105C>G Pro369Ala
M0037581 CNEJDKLB_00002 1192 11 Skin 0.58 protein_coding synonymous_variant LOW 1104C>T His368His
M0037582 CNEJDKLB_00002 1219 7 Skin 0.37 protein_coding synonymous_variant LOW 1077T>C Ser359Ser
M0037583 CNEJDKLB_00002 1245 8 Skin 0.42 protein_coding missense_variant MODERATE 1051A>C Lys351Gln
M0037584 CNEJDKLB_00002 1327 10 Skin 0.53 protein_coding synonymous_variant LOW 969T>C Ser323Ser
M0037585 CNEJDKLB_00002 1411 11 Skin 0.58 protein_coding synonymous_variant LOW 885A>G Ala295Ala
M0037586 CNEJDKLB_00002 1436 11 Skin 0.58 protein_coding missense_variant MODERATE 860G>A Arg287Lys
M0037587 CNEJDKLB_00002 1459 11 Skin 0.58 protein_coding synonymous_variant LOW 837C>G Pro279Pro
M0037588 CNEJDKLB_00002 1566 11 Skin 0.58 protein_coding missense_variant MODERATE 730A>T Thr244Ser
M0037589 CNEJDKLB_00002 1577 3 Skin 0.16 protein_coding missense_variant MODERATE 719G>A Gly240Asp
M0037590 CNEJDKLB_00002 1618 11 Skin 0.58 protein_coding synonymous_variant LOW 678T>C Ser226Ser
M0037591 CNEJDKLB_00002 1771 3 Skin 0.16 protein_coding synonymous_variant LOW 525C>G Val175Val
M0037592 CNEJDKLB_00002 1810 10 Skin 0.53 protein_coding synonymous_variant LOW 486A>C Ala162Ala
M0037593 CNEJDKLB_00002 1823 10 Skin 0.53 protein_coding missense_variant MODERATE 473C>T Thr158Met
M0037594 CNEJDKLB_00002 1872 8 Skin 0.42 protein_coding missense_variant MODERATE 424A>G Thr142Ala
M0037595 CNEJDKLB_00002 1906 7 Skin 0.37 protein_coding synonymous_variant LOW 390C>T Arg130Arg
M0037596 CNEJDKLB_00002 1951 10 Skin 0.53 protein_coding synonymous_variant LOW 345T>A Gly115Gly
M0037597 CNEJDKLB_00002 2008 6 Skin 0.32 protein_coding missense_variant MODERATE 288G>T Glu96Asp
M0037598 CNEJDKLB_00002 2020 4 Skin 0.21 protein_coding synonymous_variant LOW 276C>G Arg92Arg
M0037599 CNEJDKLB_00002 2036 9 Skin 0.47 protein_coding missense_variant MODERATE 260T>C Met87Thr
M0037600 CNEJDKLB_00002 2037 9 Skin 0.47 protein_coding missense_variant MODERATE 259A>G Met87Val
M0037601 CNEJDKLB_00002 2119 7 Skin 0.37 protein_coding synonymous_variant LOW 177C>G Gly59Gly
M0037602 CNEJDKLB_00003 2421 6 Skin 0.32 protein_coding synonymous_variant LOW 915A>G Glu305Glu
M0037603 CNEJDKLB_00003 2430 4 Skin 0.21 protein_coding synonymous_variant LOW 906C>G Gly302Gly
M0037604 CNEJDKLB_00003 2529 5 Skin 0.26 protein_coding synonymous_variant LOW 807C>T Asp269Asp
M0037605 CNEJDKLB_00003 2634 6 Skin 0.32 protein_coding synonymous_variant LOW 702C>G Ala234Ala
M0037606 CNEJDKLB_00003 2696 7 Skin 0.37 protein_coding synonymous_variant LOW 640T>C Leu214Leu
M0037607 CNEJDKLB_00003 2885 7 Skin 0.37 protein_coding missense_variant MODERATE 451A>G Arg151Gly
M0037608 CNEJDKLB_00003 2901 3 Skin 0.16 protein_coding synonymous_variant LOW 435A>G Ala145Ala
M0037609 CNEJDKLB_00003 2912 3 Skin 0.16 protein_coding missense_variant MODERATE 424C>G Gln142Glu
M0037610 CNEJDKLB_00003 2938 5 Skin 0.26 protein_coding missense_variant MODERATE 398A>G Gln133Arg
M0037611 CNEJDKLB_00003 2949 6 Skin 0.32 protein_coding synonymous_variant LOW 387A>G Leu129Leu
M0037612 CNEJDKLB_00003 2951 6 Skin 0.32 protein_coding missense_variant MODERATE 385C>A Leu129Ile
M0037613 CNEJDKLB_00003 2970 5 Skin 0.26 protein_coding synonymous_variant LOW 366A>G Gly122Gly
M0037614 CNEJDKLB_00003 3030 6 Skin 0.32 protein_coding synonymous_variant LOW 306A>G Ala102Ala
M0037615 CNEJDKLB_00003 3035 6 Skin 0.32 protein_coding synonymous_variant LOW 301T>C Leu101Leu
M0037616 CNEJDKLB_00003 3192 3 Skin 0.16 protein_coding synonymous_variant LOW 144T>C Thr48Thr
M0037617 CNEJDKLB_00003 3272 6 Skin 0.32 protein_coding missense_variant MODERATE 64T>G Ser22Ala
M0037618 CNEJDKLB_00003 3312 4 Skin 0.21 protein_coding synonymous_variant LOW 24A>G Glu8Glu
M0037619 CNEJDKLB_00001 3342 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2636A>G None
M0037620 CNEJDKLB_00001 3361 5 Skin 0.26 protein_coding upstream_gene_variant MODIFIER -2655A>G None
M0037621 CNEJDKLB_00001 3363 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -2657T>C None
M0037622 CNEJDKLB_00004 3386 4 Skin 0.21 protein_coding synonymous_variant LOW 288G>C Ala96Ala
M0037623 CNEJDKLB_00004 3395 4 Skin 0.21 protein_coding synonymous_variant LOW 279T>C Gly93Gly
M0037624 CNEJDKLB_00004 3406 4 Skin 0.21 protein_coding missense_variant MODERATE 268G>A Gly90Ser
M0037625 CNEJDKLB_00004 3457 4 Skin 0.21 protein_coding missense_variant MODERATE 217G>A Gly73Ser
M0037626 CNEJDKLB_00004 3490 5 Skin 0.26 protein_coding missense_variant MODERATE 184G>T Ala62Ser
M0037627 CNEJDKLB_00004 3533 4 Skin 0.21 protein_coding synonymous_variant LOW 141T>C Val47Val
M0037628 CNEJDKLB_00004 3544 3 Skin 0.16 protein_coding missense_variant MODERATE 130C>A Leu44Ile
M0037629 CNEJDKLB_00004 3577 3 Skin 0.16 protein_coding missense_variant MODERATE 97A>G Ile33Val
M0037630 CNEJDKLB_00004 3599 4 Skin 0.21 protein_coding synonymous_variant LOW 75G>C Pro25Pro
M0037631 CNEJDKLB_00004 3603 3 Skin 0.16 protein_coding missense_variant MODERATE 71G>C Gly24Ala
M0037632 CNEJDKLB_00001 3743 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3037G>A None
M0037633 CNEJDKLB_00001 3766 4 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3060C>G None
M0037634 CNEJDKLB_00001 3818 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3112C>T None
M0037635 CNEJDKLB_00001 3847 3 Skin 0.16 protein_coding upstream_gene_variant MODIFIER -3141C>G None
M0037636 CNEJDKLB_00005 3932 4 Skin 0.21 protein_coding synonymous_variant LOW 588T>G Val196Val
M0037637 CNEJDKLB_00005 4043 3 Skin 0.16 protein_coding synonymous_variant LOW 477T>C Val159Val
M0037638 CNEJDKLB_00005 4123 3 Skin 0.16 protein_coding missense_variant MODERATE 397G>A Ala133Thr
M0037639 CNEJDKLB_00005 4151 4 Skin 0.21 protein_coding synonymous_variant LOW 369C>T Asp123Asp
M0037640 CNEJDKLB_00005 4157 4 Skin 0.21 protein_coding synonymous_variant LOW 363T>C Ser121Ser
M0037641 CNEJDKLB_00005 4202 4 Skin 0.21 protein_coding synonymous_variant LOW 318T>C Thr106Thr
M0037642 CNEJDKLB_00005 4294 4 Skin 0.21 protein_coding missense_variant MODERATE 226G>A Gly76Ser
M0037643 CNEJDKLB_00005 4303 4 Skin 0.21 protein_coding missense_variant MODERATE 217A>G Thr73Ala
M0037644 CNEJDKLB_00005 4313 4 Skin 0.21 protein_coding synonymous_variant LOW 207G>C Gly69Gly
M0037645 CNEJDKLB_00005 4349 3 Skin 0.16 protein_coding missense_variant MODERATE 171A>G Ile57Met
M0037646 CNEJDKLB_00005 4364 3 Skin 0.16 protein_coding synonymous_variant LOW 156C>G Arg52Arg
M0037647 CNEJDKLB_00005 4402 3 Skin 0.16 protein_coding missense_variant MODERATE 118C>G Leu40Val
M0037648 CNEJDKLB_00001 218 8 Skin 0.42 protein_coding synonymous_variant LOW 489C>G Ser163Ser
M0037649 CNEJDKLB_00001 239 8 Skin 0.42 protein_coding synonymous_variant LOW 468A>G Gly156Gly
M0037650 CNEJDKLB_00001 272 8 Skin 0.42 protein_coding synonymous_variant LOW 435T>C Ala145Ala
M0037651 CNEJDKLB_00001 317 5 Skin 0.26 protein_coding synonymous_variant LOW 390C>G Ser130Ser
M0037652 CNEJDKLB_00001 380 9 Skin 0.47 protein_coding synonymous_variant LOW 327A>C Gly109Gly
M0037653 CNEJDKLB_00001 398 9 Skin 0.47 protein_coding synonymous_variant LOW 309A>C Ile103Ile
M0037654 CNEJDKLB_00001 488 3 Skin 0.16 protein_coding synonymous_variant LOW 219T>C Ala73Ala
M0037655 CNEJDKLB_00001 586 8 Skin 0.42 protein_coding missense_variant MODERATE 121G>A Val41Met
M0037656 CNEJDKLB_00001 608 7 Skin 0.37 protein_coding synonymous_variant LOW 99T>C Gly33Gly
M0037657 CNEJDKLB_00001 665 7 Skin 0.37 protein_coding synonymous_variant LOW 42G>A Glu14Glu
M0037658 CNEJDKLB_00002 835 3 Skin 0.16 protein_coding synonymous_variant LOW 1461G>A Glu487Glu
M0037659 CNEJDKLB_00002 849 6 Skin 0.32 protein_coding missense_variant MODERATE 1447T>G Ser483Ala
M0037660 CNEJDKLB_00002 1045 4 Skin 0.21 protein_coding synonymous_variant LOW 1251G>C Val417Val
M0037661 CNEJDKLB_00002 1166 3 Skin 0.16 protein_coding missense_variant MODERATE 1130A>C Asn377Thr
M0037662 CNEJDKLB_00002 2245 4 Skin 0.21 protein_coding synonymous_variant LOW 51A>G Arg17Arg
M0037663 CNEJDKLB_00003 2433 3 Skin 0.16 protein_coding synonymous_variant LOW 903C>T Ala301Ala
M0037664 CNEJDKLB_00003 2459 3 Skin 0.16 protein_coding missense_variant MODERATE 877G>A Val293Ile
M0037665 CNEJDKLB_00003 2460 7 Skin 0.37 protein_coding synonymous_variant LOW 876A>G Ala292Ala
M0037666 CNEJDKLB_00001 296 7 Skin 0.37 protein_coding synonymous_variant LOW 411G>C Val137Val
M0037667 CNEJDKLB_00001 302 4 Skin 0.21 protein_coding synonymous_variant LOW 405T>C Gly135Gly
M0037668 CNEJDKLB_00001 344 3 Skin 0.16 protein_coding synonymous_variant LOW 363T>C Tyr121Tyr
M0037669 CNEJDKLB_00002 1936 4 Skin 0.21 protein_coding synonymous_variant LOW 360C>T Pro120Pro
M0037670 CNEJDKLB_00003 2443 3 Skin 0.16 protein_coding missense_variant MODERATE 893C>G Ala298Gly
M0037671 CNEJDKLB_00003 2582 3 Skin 0.16 protein_coding missense_variant MODERATE 754C>A Leu252Ile
M0037672 CNEJDKLB_00003 2770 3 Skin 0.16 protein_coding missense_variant MODERATE 566T>G Val189Gly
M0037673 CNEJDKLB_00003 2771 3 Skin 0.16 protein_coding missense_variant MODERATE 565G>T Val189Leu
M0037674 CNEJDKLB_00003 2780 3 Skin 0.16 protein_coding missense_variant MODERATE 556G>C Val186Leu
M0037675 CNEJDKLB_00003 2798 3 Skin 0.16 protein_coding missense_variant MODERATE 538T>G Ser180Ala
M0037676 CNEJDKLB_00003 2859 6 Skin 0.32 protein_coding synonymous_variant LOW 477G>C Ala159Ala
M0037677 CNEJDKLB_00003 3047 4 Skin 0.21 protein_coding missense_variant MODERATE 289C>G Leu97Val
M0037678 CNEJDKLB_00002 1269 4 Skin 0.21 protein_coding missense_variant MODERATE 1027G>A Val343Ile
M0037679 CNEJDKLB_00002 1642 5 Skin 0.26 protein_coding synonymous_variant LOW 654T>G Ala218Ala
M0037680 CNEJDKLB_00002 1903 3 Skin 0.16 protein_coding synonymous_variant LOW 393T>C Asp131Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term