Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2341
  Reference Plasmid   1111525849767380_bin.20__k141_8498
  Reference Plasmid Size   7643
  Reference Plasmid GC Content   0.71
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0037714 JHJEGGKP_00004 3686 6 Skin 0.55 protein_coding synonymous_variant LOW 375C>G Arg125Arg
M0037715 JHJEGGKP_00004 3728 5 Skin 0.45 protein_coding synonymous_variant LOW 417C>T Pro139Pro
M0037716 JHJEGGKP_00004 3821 6 Skin 0.55 protein_coding synonymous_variant LOW 510T>C Asn170Asn
M0037717 JHJEGGKP_00004 3842 6 Skin 0.55 protein_coding synonymous_variant LOW 531C>A Gly177Gly
M0037718 JHJEGGKP_00004 3848 6 Skin 0.55 protein_coding synonymous_variant LOW 537C>G Gly179Gly
M0037719 JHJEGGKP_00004 3857 6 Skin 0.55 protein_coding synonymous_variant LOW 546G>C Val182Val
M0037720 JHJEGGKP_00004 3860 6 Skin 0.55 protein_coding synonymous_variant LOW 549G>A Arg183Arg
M0037721 JHJEGGKP_00004 3908 5 Skin 0.45 protein_coding synonymous_variant LOW 597C>G Val199Val
M0037722 JHJEGGKP_00004 3929 5 Skin 0.45 protein_coding synonymous_variant LOW 618T>C Asp206Asp
M0037723 JHJEGGKP_00004 3936 5 Skin 0.45 protein_coding synonymous_variant LOW 625T>C Leu209Leu
M0037724 JHJEGGKP_00004 3942 5 Skin 0.45 protein_coding synonymous_variant LOW 631C>T Leu211Leu
M0037725 JHJEGGKP_00004 3958 5 Skin 0.45 protein_coding missense_variant MODERATE 647C>T Ala216Val
M0037726 JHJEGGKP_00004 4046 5 Skin 0.45 protein_coding synonymous_variant LOW 735A>G Glu245Glu
M0037727 JHJEGGKP_00005 4291 6 Skin 0.55 protein_coding synonymous_variant LOW 51C>T Gly17Gly
M0037728 JHJEGGKP_00005 4303 6 Skin 0.55 protein_coding synonymous_variant LOW 63T>C Asn21Asn
M0037729 JHJEGGKP_00005 4306 6 Skin 0.55 protein_coding synonymous_variant LOW 66G>C Pro22Pro
M0037730 JHJEGGKP_00005 4312 6 Skin 0.55 protein_coding synonymous_variant LOW 72C>G Ala24Ala
M0037731 JHJEGGKP_00005 4336 6 Skin 0.55 protein_coding synonymous_variant LOW 96G>A Ala32Ala
M0037732 JHJEGGKP_00005 4342 7 Skin 0.64 protein_coding synonymous_variant LOW 102T>G Gly34Gly
M0037733 JHJEGGKP_00005 4372 6 Skin 0.55 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0037734 JHJEGGKP_00005 4393 8 Skin 0.73 protein_coding synonymous_variant LOW 153C>G Gly51Gly
M0037735 JHJEGGKP_00005 4420 7 Skin 0.64 protein_coding synonymous_variant LOW 180C>G Leu60Leu
M0037736 JHJEGGKP_00005 4423 7 Skin 0.64 protein_coding synonymous_variant LOW 183G>C Thr61Thr
M0037737 JHJEGGKP_00006 4509 7 Skin 0.64 protein_coding synonymous_variant LOW 57C>T Pro19Pro
M0037738 JHJEGGKP_00006 4524 7 Skin 0.64 protein_coding synonymous_variant LOW 72G>A Gln24Gln
M0037739 JHJEGGKP_00006 4530 7 Skin 0.64 protein_coding synonymous_variant LOW 78A>C Ala26Ala
M0037740 JHJEGGKP_00006 4599 6 Skin 0.55 protein_coding synonymous_variant LOW 147G>C Val49Val
M0037741 JHJEGGKP_00006 4608 5 Skin 0.45 protein_coding synonymous_variant LOW 156C>T Gly52Gly
M0037742 JHJEGGKP_00006 4653 4 Skin 0.36 protein_coding synonymous_variant LOW 201C>T Arg67Arg
M0037743 JHJEGGKP_00008 4683 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1596T>C None
M0037744 JHJEGGKP_00007 4719 3 Skin 0.27 protein_coding missense_variant MODERATE 1033G>A Ala345Thr
M0037745 JHJEGGKP_00007 4723 5 Skin 0.45 protein_coding synonymous_variant LOW 1029A>G Glu343Glu
M0037746 JHJEGGKP_00007 4737 4 Skin 0.36 protein_coding missense_variant MODERATE 1015C>G Pro339Ala
M0037747 JHJEGGKP_00007 4741 3 Skin 0.27 protein_coding synonymous_variant LOW 1011G>A Thr337Thr
M0037748 JHJEGGKP_00007 4747 4 Skin 0.36 protein_coding synonymous_variant LOW 1005T>C Pro335Pro
M0037749 JHJEGGKP_00007 4762 3 Skin 0.27 protein_coding synonymous_variant LOW 990G>T Pro330Pro
M0037750 JHJEGGKP_00007 4798 4 Skin 0.36 protein_coding synonymous_variant LOW 954A>G Ala318Ala
M0037751 JHJEGGKP_00007 4912 3 Skin 0.27 protein_coding synonymous_variant LOW 840C>T Pro280Pro
M0037752 JHJEGGKP_00007 4924 3 Skin 0.27 protein_coding synonymous_variant LOW 828C>T Ala276Ala
M0037753 JHJEGGKP_00007 5527 4 Skin 0.36 protein_coding synonymous_variant LOW 225C>T Asp75Asp
M0037754 JHJEGGKP_00007 5530 4 Skin 0.36 protein_coding synonymous_variant LOW 222C>T Arg74Arg
M0037755 JHJEGGKP_00007 5623 4 Skin 0.36 protein_coding synonymous_variant LOW 129A>G Glu43Glu
M0037756 JHJEGGKP_00007 5638 4 Skin 0.36 protein_coding synonymous_variant LOW 114A>G Ala38Ala
M0037757 JHJEGGKP_00007 5641 4 Skin 0.36 protein_coding synonymous_variant LOW 111C>T Asn37Asn
M0037758 JHJEGGKP_00007 5686 4 Skin 0.36 protein_coding synonymous_variant LOW 66T>G Ala22Ala
M0037759 JHJEGGKP_00007 5707 4 Skin 0.36 protein_coding synonymous_variant LOW 45A>G Leu15Leu
M0037760 JHJEGGKP_00007 5710 4 Skin 0.36 protein_coding synonymous_variant LOW 42C>T Tyr14Tyr
M0037761 JHJEGGKP_00007 5753 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0037762 JHJEGGKP_00007 5788 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -37T>C None
M0037763 JHJEGGKP_00007 5810 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -59T>C None
M0037764 JHJEGGKP_00007 6074 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -323G>C None
M0037765 JHJEGGKP_00007 6081 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -330G>T None
M0037766 JHJEGGKP_00007 6096 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -345C>T None
M0037767 JHJEGGKP_00007 6118 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -367G>C None
M0037768 JHJEGGKP_00007 6119 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -368C>A None
M0037769 JHJEGGKP_00007 6121 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -370G>C None
M0037770 JHJEGGKP_00007 6123 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -372A>T None
M0037771 JHJEGGKP_00007 6140 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -389T>C None
M0037772 JHJEGGKP_00007 6164 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -413C>T None
M0037773 JHJEGGKP_00007 6170 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -419C>A None
M0037774 JHJEGGKP_00007 6173 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -422T>C None
M0037775 JHJEGGKP_00007 6182 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -431C>T None
M0037776 JHJEGGKP_00007 6240 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -489T>C None
M0037777 JHJEGGKP_00007 6657 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -906C>G None
M0037778 JHJEGGKP_00007 6659 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -908G>A None
M0037779 JHJEGGKP_00009 6741 5 Skin 0.45 protein_coding synonymous_variant LOW 57A>G Lys19Lys
M0037780 JHJEGGKP_00009 6915 5 Skin 0.45 protein_coding synonymous_variant LOW 231G>A Glu77Glu
M0037781 JHJEGGKP_00007 7066 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1315G>T None
M0037782 JHJEGGKP_00007 7098 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1347G>A None
M0037783 JHJEGGKP_00007 7107 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1356T>C None
M0037784 JHJEGGKP_00007 7114 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -1363G>T None
M0037785 JHJEGGKP_00007 7116 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -1365A>C None
M0037786 JHJEGGKP_00007 7119 6 Skin 0.55 protein_coding upstream_gene_variant MODIFIER -1368T>C None
M0037787 JHJEGGKP_00007 7160 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -1409C>T None
M0037788 JHJEGGKP_00007 7233 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1482G>A None
M0037789 JHJEGGKP_00007 7450 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1699G>A None
M0037790 JHJEGGKP_00007 7458 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1707G>A None
M0037791 JHJEGGKP_00007 7500 7 Skin 0.64 protein_coding upstream_gene_variant MODIFIER -1749T>C None
M0037792 JHJEGGKP_00007 7503 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -1752T>G None
M0037793 JHJEGGKP_00001 27 5 Skin 0.45 protein_coding synonymous_variant LOW 12T>C Tyr4Tyr
M0037794 JHJEGGKP_00001 66 5 Skin 0.45 protein_coding synonymous_variant LOW 51C>G Arg17Arg
M0037795 JHJEGGKP_00001 93 5 Skin 0.45 protein_coding synonymous_variant LOW 78C>G Ala26Ala
M0037796 JHJEGGKP_00001 114 5 Skin 0.45 protein_coding synonymous_variant LOW 99A>G Glu33Glu
M0037797 JHJEGGKP_00001 117 5 Skin 0.45 protein_coding synonymous_variant LOW 102G>C Thr34Thr
M0037798 JHJEGGKP_00001 153 5 Skin 0.45 protein_coding synonymous_variant LOW 138C>T Ile46Ile
M0037799 JHJEGGKP_00001 162 5 Skin 0.45 protein_coding synonymous_variant LOW 147G>T Pro49Pro
M0037800 JHJEGGKP_00001 168 5 Skin 0.45 protein_coding synonymous_variant LOW 153C>G Ala51Ala
M0037801 JHJEGGKP_00001 174 5 Skin 0.45 protein_coding synonymous_variant LOW 159C>T Cys53Cys
M0037802 JHJEGGKP_00001 177 5 Skin 0.45 protein_coding synonymous_variant LOW 162C>G Ser54Ser
M0037803 JHJEGGKP_00001 198 5 Skin 0.45 protein_coding synonymous_variant LOW 183A>G Gly61Gly
M0037804 JHJEGGKP_00001 243 5 Skin 0.45 protein_coding synonymous_variant LOW 228G>C Val76Val
M0037805 JHJEGGKP_00001 264 5 Skin 0.45 protein_coding synonymous_variant LOW 249C>G Thr83Thr
M0037806 JHJEGGKP_00001 279 5 Skin 0.45 protein_coding synonymous_variant LOW 264G>C Ala88Ala
M0037807 JHJEGGKP_00001 285 5 Skin 0.45 protein_coding synonymous_variant LOW 270G>C Thr90Thr
M0037808 JHJEGGKP_00001 303 4 Skin 0.36 protein_coding synonymous_variant LOW 288G>C Ser96Ser
M0037809 JHJEGGKP_00001 338 4 Skin 0.36 protein_coding missense_variant MODERATE 323G>A Arg108Lys
M0037810 JHJEGGKP_00001 354 4 Skin 0.36 protein_coding synonymous_variant LOW 339T>C Asp113Asp
M0037811 JHJEGGKP_00001 372 4 Skin 0.36 protein_coding synonymous_variant LOW 357G>C Pro119Pro
M0037812 JHJEGGKP_00001 378 4 Skin 0.36 protein_coding synonymous_variant LOW 363A>G Glu121Glu
M0037813 JHJEGGKP_00001 399 4 Skin 0.36 protein_coding synonymous_variant LOW 384C>G Ala128Ala
M0037814 JHJEGGKP_00001 405 4 Skin 0.36 protein_coding synonymous_variant LOW 390A>G Gln130Gln
M0037815 JHJEGGKP_00001 409 4 Skin 0.36 protein_coding missense_variant MODERATE 394A>C Ser132Arg
M0037816 JHJEGGKP_00001 414 4 Skin 0.36 protein_coding synonymous_variant LOW 399C>G Val133Val
M0037817 JHJEGGKP_00001 504 5 Skin 0.45 protein_coding synonymous_variant LOW 489C>A Ala163Ala
M0037818 JHJEGGKP_00001 510 3 Skin 0.27 protein_coding synonymous_variant LOW 495C>T Ile165Ile
M0037819 JHJEGGKP_00001 525 5 Skin 0.45 protein_coding synonymous_variant LOW 510G>A Glu170Glu
M0037820 JHJEGGKP_00001 528 5 Skin 0.45 protein_coding synonymous_variant LOW 513C>T Cys171Cys
M0037821 JHJEGGKP_00001 564 5 Skin 0.45 protein_coding synonymous_variant LOW 549C>A Gly183Gly
M0037822 JHJEGGKP_00001 567 5 Skin 0.45 protein_coding synonymous_variant LOW 552C>G Ser184Ser
M0037823 JHJEGGKP_00001 627 5 Skin 0.45 protein_coding synonymous_variant LOW 612C>A Thr204Thr
M0037824 JHJEGGKP_00001 672 5 Skin 0.45 protein_coding synonymous_variant LOW 657C>G Thr219Thr
M0037825 JHJEGGKP_00001 681 5 Skin 0.45 protein_coding synonymous_variant LOW 666T>C Ile222Ile
M0037826 JHJEGGKP_00001 684 5 Skin 0.45 protein_coding synonymous_variant LOW 669C>G Gly223Gly
M0037827 JHJEGGKP_00001 687 5 Skin 0.45 protein_coding synonymous_variant LOW 672G>A Pro224Pro
M0037828 JHJEGGKP_00001 714 5 Skin 0.45 protein_coding synonymous_variant LOW 699G>C Arg233Arg
M0037829 JHJEGGKP_00001 741 5 Skin 0.45 protein_coding synonymous_variant LOW 726C>T Cys242Cys
M0037830 JHJEGGKP_00001 748 5 Skin 0.45 protein_coding missense_variant MODERATE 733G>C Asp245His
M0037831 JHJEGGKP_00001 756 5 Skin 0.45 protein_coding synonymous_variant LOW 741G>A Gln247Gln
M0037832 JHJEGGKP_00001 768 5 Skin 0.45 protein_coding synonymous_variant LOW 753C>G Thr251Thr
M0037833 JHJEGGKP_00001 777 5 Skin 0.45 protein_coding synonymous_variant LOW 762A>G Glu254Glu
M0037834 JHJEGGKP_00001 780 5 Skin 0.45 protein_coding synonymous_variant LOW 765T>C Asp255Asp
M0037835 JHJEGGKP_00001 792 5 Skin 0.45 protein_coding synonymous_variant LOW 777G>T Arg259Arg
M0037836 JHJEGGKP_00001 846 5 Skin 0.45 protein_coding synonymous_variant LOW 831G>C Ala277Ala
M0037837 JHJEGGKP_00002 923 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -30G>C None
M0037838 JHJEGGKP_00002 931 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -22G>C None
M0037839 JHJEGGKP_00002 932 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -21C>G None
M0037840 JHJEGGKP_00002 934 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -19T>A None
M0037841 JHJEGGKP_00002 945 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -8G>A None
M0037842 JHJEGGKP_00002 946 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -7G>A None
M0037843 JHJEGGKP_00002 949 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -4C>T None
M0037844 JHJEGGKP_00002 963 5 Skin 0.45 protein_coding missense_variant MODERATE 11T>C Ile4Thr
M0037845 JHJEGGKP_00002 997 5 Skin 0.45 protein_coding synonymous_variant LOW 45T>C Asp15Asp
M0037846 JHJEGGKP_00002 1015 5 Skin 0.45 protein_coding synonymous_variant LOW 63G>A Ala21Ala
M0037847 JHJEGGKP_00002 1028 5 Skin 0.45 protein_coding missense_variant MODERATE 76A>G Thr26Ala
M0037848 JHJEGGKP_00002 1034 5 Skin 0.45 protein_coding missense_variant MODERATE 82G>A Ala28Thr
M0037849 JHJEGGKP_00002 1054 5 Skin 0.45 protein_coding synonymous_variant LOW 102T>C Pro34Pro
M0037850 JHJEGGKP_00002 1056 5 Skin 0.45 protein_coding missense_variant MODERATE 104T>C Val35Ala
M0037851 JHJEGGKP_00002 1073 5 Skin 0.45 protein_coding synonymous_variant LOW 121T>C Leu41Leu
M0037852 JHJEGGKP_00002 1085 5 Skin 0.45 protein_coding missense_variant MODERATE 133C>G Leu45Val
M0037853 JHJEGGKP_00002 1096 5 Skin 0.45 protein_coding synonymous_variant LOW 144C>G Thr48Thr
M0037854 JHJEGGKP_00002 1117 5 Skin 0.45 protein_coding synonymous_variant LOW 165T>G Leu55Leu
M0037855 JHJEGGKP_00002 1583 3 Skin 0.27 protein_coding synonymous_variant LOW 631C>T Leu211Leu
M0037856 JHJEGGKP_00002 1588 4 Skin 0.36 protein_coding synonymous_variant LOW 636G>C Ala212Ala
M0037857 JHJEGGKP_00002 1607 3 Skin 0.27 protein_coding missense_variant MODERATE 655C>T Leu219Phe
M0037858 JHJEGGKP_00002 1609 4 Skin 0.36 protein_coding synonymous_variant LOW 657T>A Leu219Leu
M0037859 JHJEGGKP_00002 1693 5 Skin 0.45 protein_coding synonymous_variant LOW 741C>G Gly247Gly
M0037860 JHJEGGKP_00002 1696 5 Skin 0.45 protein_coding synonymous_variant LOW 744T>G Ala248Ala
M0037861 JHJEGGKP_00002 1702 5 Skin 0.45 protein_coding synonymous_variant LOW 750T>C Cys250Cys
M0037862 JHJEGGKP_00002 1707 4 Skin 0.36 protein_coding missense_variant MODERATE 755C>T Ala252Val
M0037863 JHJEGGKP_00002 1747 4 Skin 0.36 protein_coding synonymous_variant LOW 795C>T Asp265Asp
M0037864 JHJEGGKP_00002 1748 4 Skin 0.36 protein_coding missense_variant MODERATE 796A>C Thr266Pro
M0037865 JHJEGGKP_00002 1752 3 Skin 0.27 protein_coding missense_variant MODERATE 800G>C Gly267Ala
M0037866 JHJEGGKP_00003 2009 3 Skin 0.27 protein_coding missense_variant MODERATE 212G>C Gly71Ala
M0037867 JHJEGGKP_00003 2010 3 Skin 0.27 protein_coding synonymous_variant LOW 213G>C Gly71Gly
M0037868 JHJEGGKP_00003 2019 3 Skin 0.27 protein_coding synonymous_variant LOW 222G>C Gly74Gly
M0037869 JHJEGGKP_00003 2040 3 Skin 0.27 protein_coding missense_variant MODERATE 243A>C Glu81Asp
M0037870 JHJEGGKP_00003 2058 3 Skin 0.27 protein_coding synonymous_variant LOW 261G>C Thr87Thr
M0037871 JHJEGGKP_00003 2061 3 Skin 0.27 protein_coding synonymous_variant LOW 264A>G Gln88Gln
M0037872 JHJEGGKP_00003 2067 3 Skin 0.27 protein_coding synonymous_variant LOW 270G>A Gly90Gly
M0037873 JHJEGGKP_00003 2071 3 Skin 0.27 protein_coding missense_variant MODERATE 274T>G Ser92Ala
M0037874 JHJEGGKP_00003 2076 3 Skin 0.27 protein_coding synonymous_variant LOW 279G>C Thr93Thr
M0037875 JHJEGGKP_00003 2097 3 Skin 0.27 protein_coding synonymous_variant LOW 300C>G Leu100Leu
M0037876 JHJEGGKP_00003 2106 3 Skin 0.27 protein_coding synonymous_variant LOW 309G>C Pro103Pro
M0037877 JHJEGGKP_00003 2109 3 Skin 0.27 protein_coding synonymous_variant LOW 312C>T Phe104Phe
M0037878 JHJEGGKP_00003 2115 3 Skin 0.27 protein_coding synonymous_variant LOW 318G>C Arg106Arg
M0037879 JHJEGGKP_00003 2118 3 Skin 0.27 protein_coding synonymous_variant LOW 321C>T Asp107Asp
M0037880 JHJEGGKP_00003 2139 3 Skin 0.27 protein_coding synonymous_variant LOW 342T>C Val114Val
M0037881 JHJEGGKP_00003 2270 3 Skin 0.27 protein_coding missense_variant MODERATE 473T>C Leu158Ser
M0037882 JHJEGGKP_00003 2279 3 Skin 0.27 protein_coding missense_variant MODERATE 482C>G Ala161Gly
M0037883 JHJEGGKP_00003 2883 5 Skin 0.45 protein_coding synonymous_variant LOW 1086C>T Cys362Cys
M0037884 JHJEGGKP_00007 5347 3 Skin 0.27 protein_coding synonymous_variant LOW 405T>C Tyr135Tyr
M0037885 JHJEGGKP_00007 5362 4 Skin 0.36 protein_coding synonymous_variant LOW 390A>G Thr130Thr
M0037886 JHJEGGKP_00007 5409 4 Skin 0.36 protein_coding synonymous_variant LOW 343C>A Arg115Arg
M0037887 JHJEGGKP_00007 5430 4 Skin 0.36 protein_coding missense_variant MODERATE 322T>G Ser108Ala
M0037888 JHJEGGKP_00007 5482 4 Skin 0.36 protein_coding synonymous_variant LOW 270G>C Pro90Pro
M0037889 JHJEGGKP_00007 5980 5 Skin 0.45 protein_coding upstream_gene_variant MODIFIER -229C>G None
M0037890 JHJEGGKP_00003 1796 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2C>T None
M0037891 JHJEGGKP_00003 1802 3 Skin 0.27 protein_coding missense_variant MODERATE 5T>A Ile2Asn
M0037892 JHJEGGKP_00003 1803 3 Skin 0.27 protein_coding synonymous_variant LOW 6T>C Ile2Ile
M0037893 JHJEGGKP_00005 4408 5 Skin 0.45 protein_coding synonymous_variant LOW 168C>T Ala56Ala
M0037894 JHJEGGKP_00007 5894 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -143T>G None
M0037895 JHJEGGKP_00007 5897 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -146C>T None
M0037896 JHJEGGKP_00007 5900 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -149C>T None
M0037897 JHJEGGKP_00007 5910 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -159G>T None
M0037898 JHJEGGKP_00007 5921 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -170A>G None
M0037899 JHJEGGKP_00007 5990 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -239A>G None
M0037900 JHJEGGKP_00007 5997 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -246C>T None
M0037901 JHJEGGKP_00007 6015 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -264C>G None
M0037902 JHJEGGKP_00007 6022 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -271A>T None
M0037903 JHJEGGKP_00007 6044 4 Skin 0.36 protein_coding upstream_gene_variant MODIFIER -293G>A None
M0037904 JHJEGGKP_00007 6048 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -297C>T None
M0037905 JHJEGGKP_00007 6681 3 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -930G>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term