Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2347
  Reference Plasmid   1111525849767596_bin.1__k141_63654
  Reference Plasmid Size   31305
  Reference Plasmid GC Content   0.67
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0038026 HLIDELMF_00014 14906 3 Skin 0.13 protein_coding synonymous_variant LOW 435C>T Asp145Asp
M0038027 HLIDELMF_00014 14942 3 Skin 0.13 protein_coding missense_variant MODERATE 399G>C Arg133Ser
M0038028 HLIDELMF_00014 14966 3 Skin 0.13 protein_coding synonymous_variant LOW 375A>G Lys125Lys
M0038029 HLIDELMF_00014 14979 3 Skin 0.13 protein_coding missense_variant MODERATE 362G>A Arg121Gln
M0038030 HLIDELMF_00014 14982 3 Skin 0.13 protein_coding missense_variant MODERATE 359C>A Thr120Lys
M0038031 HLIDELMF_00017 21716 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3937C>G None
M0038032 HLIDELMF_00017 21717 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3938T>C None
M0038033 HLIDELMF_00017 21719 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3940A>C None
M0038034 HLIDELMF_00017 21720 4 Skin 0.17 protein_coding upstream_gene_variant MODIFIER -3941G>C None
M0038035 HLIDELMF_00017 21722 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3943A>G None
M0038036 HLIDELMF_00017 21724 9 Skin 0.38 protein_coding upstream_gene_variant MODIFIER -3945G>T None
M0038037 HLIDELMF_00021 22049 8 Skin 0.33 protein_coding synonymous_variant LOW 705G>C Gly235Gly
M0038038 HLIDELMF_00021 22050 8 Skin 0.33 protein_coding missense_variant MODERATE 704G>C Gly235Ala
M0038039 HLIDELMF_00021 22052 8 Skin 0.33 protein_coding synonymous_variant LOW 702C>T Ala234Ala
M0038040 HLIDELMF_00021 22061 8 Skin 0.33 protein_coding synonymous_variant LOW 693A>G Gln231Gln
M0038041 HLIDELMF_00021 22499 3 Skin 0.13 protein_coding synonymous_variant LOW 255C>G Ala85Ala
M0038042 HLIDELMF_00021 22583 10 Skin 0.42 protein_coding synonymous_variant LOW 171T>A Ala57Ala
M0038043 HLIDELMF_00021 22584 10 Skin 0.42 protein_coding missense_variant MODERATE 170C>G Ala57Gly
M0038044 HLIDELMF_00021 22586 10 Skin 0.42 protein_coding synonymous_variant LOW 168C>G Val56Val
M0038045 HLIDELMF_00021 22594 10 Skin 0.42 protein_coding synonymous_variant LOW 160C>T Leu54Leu
M0038046 HLIDELMF_00021 22595 10 Skin 0.42 protein_coding synonymous_variant LOW 159C>G Gly53Gly
M0038047 HLIDELMF_00021 22601 8 Skin 0.33 protein_coding synonymous_variant LOW 153G>A Lys51Lys
M0038048 HLIDELMF_00021 22631 4 Skin 0.17 protein_coding synonymous_variant LOW 123G>A Val41Val
M0038049 HLIDELMF_00022 23103 3 Skin 0.13 protein_coding synonymous_variant LOW 108G>C Gly36Gly
M0038050 HLIDELMF_00022 23106 3 Skin 0.13 protein_coding missense_variant MODERATE 111C>G Asp37Glu
M0038051 HLIDELMF_00022 23127 3 Skin 0.13 protein_coding synonymous_variant LOW 132C>G Leu44Leu
M0038052 HLIDELMF_00022 23187 6 Skin 0.25 protein_coding synonymous_variant LOW 192T>C Pro64Pro
M0038053 HLIDELMF_00022 23235 4 Skin 0.17 protein_coding synonymous_variant LOW 240C>G Arg80Arg
M0038054 HLIDELMF_00022 23247 4 Skin 0.17 protein_coding synonymous_variant LOW 252G>C Thr84Thr
M0038055 HLIDELMF_00022 23289 6 Skin 0.25 protein_coding synonymous_variant LOW 294C>T Ile98Ile
M0038056 HLIDELMF_00022 23577 7 Skin 0.29 protein_coding synonymous_variant LOW 582T>C Phe194Phe
M0038057 HLIDELMF_00022 23583 5 Skin 0.21 protein_coding synonymous_variant LOW 588C>G Arg196Arg
M0038058 HLIDELMF_00022 23589 7 Skin 0.29 protein_coding synonymous_variant LOW 594T>C Arg198Arg
M0038059 HLIDELMF_00022 24141 6 Skin 0.25 protein_coding synonymous_variant LOW 1146C>T Arg382Arg
M0038060 HLIDELMF_00021 21893 8 Skin 0.33 protein_coding synonymous_variant LOW 861C>T Ala287Ala
M0038061 HLIDELMF_00021 21911 10 Skin 0.42 protein_coding synonymous_variant LOW 843T>C Ala281Ala
M0038062 HLIDELMF_00021 21953 7 Skin 0.29 protein_coding synonymous_variant LOW 801C>T Arg267Arg
M0038063 HLIDELMF_00021 22025 8 Skin 0.33 protein_coding synonymous_variant LOW 729C>T His243His
M0038064 HLIDELMF_00021 22184 3 Skin 0.13 protein_coding missense_variant MODERATE 570G>C Gln190His
M0038065 HLIDELMF_00021 22185 3 Skin 0.13 protein_coding missense_variant MODERATE 569A>G Gln190Arg
M0038066 HLIDELMF_00021 22186 3 Skin 0.13 protein_coding missense_variant MODERATE 568C>A Gln190Lys
M0038067 HLIDELMF_00021 22187 3 Skin 0.13 protein_coding synonymous_variant LOW 567T>C Arg189Arg
M0038068 HLIDELMF_00021 22190 3 Skin 0.13 protein_coding synonymous_variant LOW 564A>C Gly188Gly
M0038069 HLIDELMF_00021 22202 3 Skin 0.13 protein_coding synonymous_variant LOW 552G>C Thr184Thr
M0038070 HLIDELMF_00021 22208 3 Skin 0.13 protein_coding synonymous_variant LOW 546G>A Arg182Arg
M0038071 HLIDELMF_00021 22209 3 Skin 0.13 protein_coding missense_variant MODERATE 545G>A Arg182Lys
M0038072 HLIDELMF_00021 22217 3 Skin 0.13 protein_coding synonymous_variant LOW 537C>T Ala179Ala
M0038073 HLIDELMF_00021 22221 3 Skin 0.13 protein_coding missense_variant MODERATE 533A>C Lys178Thr
M0038074 HLIDELMF_00021 22222 3 Skin 0.13 protein_coding missense_variant MODERATE 532A>G Lys178Glu
M0038075 HLIDELMF_00021 22223 3 Skin 0.13 protein_coding synonymous_variant LOW 531C>G Ser177Ser
M0038076 HLIDELMF_00021 22244 3 Skin 0.13 protein_coding synonymous_variant LOW 510T>C Ser170Ser
M0038077 HLIDELMF_00021 21845 5 Skin 0.21 protein_coding synonymous_variant LOW 909G>C Val303Val
M0038078 HLIDELMF_00021 21848 5 Skin 0.21 protein_coding synonymous_variant LOW 906C>G Gly302Gly
M0038079 HLIDELMF_00021 21851 5 Skin 0.21 protein_coding synonymous_variant LOW 903T>C Ala301Ala
M0038080 HLIDELMF_00021 21965 4 Skin 0.17 protein_coding synonymous_variant LOW 789T>C Pro263Pro
M0038081 HLIDELMF_00021 21968 4 Skin 0.17 protein_coding synonymous_variant LOW 786T>C Phe262Phe
M0038082 HLIDELMF_00021 21971 4 Skin 0.17 protein_coding synonymous_variant LOW 783C>T Val261Val
M0038083 HLIDELMF_00021 22085 5 Skin 0.21 protein_coding synonymous_variant LOW 669C>G Gly223Gly
M0038084 HLIDELMF_00021 22088 5 Skin 0.21 protein_coding synonymous_variant LOW 666G>C Ala222Ala
M0038085 HLIDELMF_00021 22280 4 Skin 0.17 protein_coding synonymous_variant LOW 474A>G Glu158Glu
M0038086 HLIDELMF_00021 22286 4 Skin 0.17 protein_coding missense_variant MODERATE 468C>G His156Gln
M0038087 HLIDELMF_00021 22289 4 Skin 0.17 protein_coding missense_variant MODERATE 465C>G Asp155Glu
M0038088 HLIDELMF_00021 22292 4 Skin 0.17 protein_coding synonymous_variant LOW 462C>G Pro154Pro
M0038089 HLIDELMF_00021 22295 4 Skin 0.17 protein_coding missense_variant MODERATE 459G>C Gln153His
M0038090 HLIDELMF_00021 22296 4 Skin 0.17 protein_coding missense_variant MODERATE 458A>G Gln153Arg
M0038091 HLIDELMF_00021 22302 4 Skin 0.17 protein_coding missense_variant MODERATE 452C>G Ala151Gly
M0038092 HLIDELMF_00021 22304 4 Skin 0.17 protein_coding synonymous_variant LOW 450C>G Gly150Gly
M0038093 HLIDELMF_00021 22334 3 Skin 0.13 protein_coding synonymous_variant LOW 420G>C Ala140Ala
M0038094 HLIDELMF_00021 22343 3 Skin 0.13 protein_coding synonymous_variant LOW 411G>C Gly137Gly
M0038095 HLIDELMF_00021 22358 5 Skin 0.21 protein_coding synonymous_variant LOW 396C>T Ser132Ser
M0038096 HLIDELMF_00021 22430 3 Skin 0.13 protein_coding synonymous_variant LOW 324C>T Ser108Ser
M0038097 HLIDELMF_00021 22448 3 Skin 0.13 protein_coding synonymous_variant LOW 306C>G Arg102Arg
M0038098 HLIDELMF_00021 22723 9 Skin 0.38 protein_coding missense_variant MODERATE 31T>C Cys11Arg
M0038099 HLIDELMF_00012 11959 4 Skin 0.17 protein_coding synonymous_variant LOW 73T>C Leu25Leu
M0038100 HLIDELMF_00012 12096 4 Skin 0.17 protein_coding synonymous_variant LOW 210G>A Glu70Glu
M0038101 HLIDELMF_00012 12117 4 Skin 0.17 protein_coding synonymous_variant LOW 231C>T Ile77Ile
M0038102 HLIDELMF_00012 12123 4 Skin 0.17 protein_coding synonymous_variant LOW 237C>G Ala79Ala
M0038103 HLIDELMF_00012 12126 4 Skin 0.17 protein_coding synonymous_variant LOW 240C>G Ala80Ala
M0038104 HLIDELMF_00012 12129 4 Skin 0.17 protein_coding synonymous_variant LOW 243C>T Tyr81Tyr
M0038105 HLIDELMF_00012 12147 4 Skin 0.17 protein_coding synonymous_variant LOW 261G>C Ala87Ala
M0038106 HLIDELMF_00012 12153 4 Skin 0.17 protein_coding synonymous_variant LOW 267T>C Asn89Asn
M0038107 HLIDELMF_00012 12441 3 Skin 0.13 protein_coding synonymous_variant LOW 555G>A Gln185Gln
M0038108 HLIDELMF_00012 12456 3 Skin 0.13 protein_coding synonymous_variant LOW 570A>G Ala190Ala
M0038109 HLIDELMF_00012 12459 3 Skin 0.13 protein_coding synonymous_variant LOW 573C>G Val191Val
M0038110 HLIDELMF_00012 12465 3 Skin 0.13 protein_coding synonymous_variant LOW 579G>A Glu193Glu
M0038111 HLIDELMF_00012 12474 3 Skin 0.13 protein_coding synonymous_variant LOW 588G>C Gly196Gly
M0038112 HLIDELMF_00012 12483 3 Skin 0.13 protein_coding synonymous_variant LOW 597G>C Leu199Leu
M0038113 HLIDELMF_00012 12484 3 Skin 0.13 protein_coding missense_variant MODERATE 598C>A Leu200Met
M0038114 HLIDELMF_00012 12486 3 Skin 0.13 protein_coding synonymous_variant LOW 600G>C Leu200Leu
M0038115 HLIDELMF_00012 12489 3 Skin 0.13 protein_coding synonymous_variant LOW 603C>G Val201Val
M0038116 HLIDELMF_00012 12510 4 Skin 0.17 protein_coding synonymous_variant LOW 624A>G Glu208Glu
M0038117 HLIDELMF_00012 12525 3 Skin 0.13 protein_coding synonymous_variant LOW 639C>T Thr213Thr
M0038118 HLIDELMF_00012 12528 3 Skin 0.13 protein_coding synonymous_variant LOW 642C>T Ser214Ser
M0038119 HLIDELMF_00012 12624 3 Skin 0.13 protein_coding synonymous_variant LOW 738C>A Gly246Gly
M0038120 HLIDELMF_00012 12633 3 Skin 0.13 protein_coding synonymous_variant LOW 747C>T Asn249Asn
M0038121 HLIDELMF_00012 12639 3 Skin 0.13 protein_coding synonymous_variant LOW 753A>G Ala251Ala
M0038122 HLIDELMF_00012 12810 3 Skin 0.13 protein_coding synonymous_variant LOW 924C>T Pro308Pro
M0038123 HLIDELMF_00017 21746 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3967A>C None
M0038124 HLIDELMF_00017 21750 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3971A>G None
M0038125 HLIDELMF_00017 21751 5 Skin 0.21 protein_coding upstream_gene_variant MODIFIER -3972G>A None
M0038126 HLIDELMF_00021 21753 5 Skin 0.21 protein_coding splice_region_variant&stop_retained_variant LOW 1001G>A Ter334Ter
M0038127 HLIDELMF_00021 21761 5 Skin 0.21 protein_coding synonymous_variant LOW 993C>T Asp331Asp
M0038128 HLIDELMF_00021 21764 5 Skin 0.21 protein_coding synonymous_variant LOW 990C>T Ile330Ile
M0038129 HLIDELMF_00021 21767 5 Skin 0.21 protein_coding synonymous_variant LOW 987C>G Val329Val
M0038130 HLIDELMF_00021 21770 5 Skin 0.21 protein_coding synonymous_variant LOW 984G>A Thr328Thr
M0038131 HLIDELMF_00021 21788 6 Skin 0.25 protein_coding synonymous_variant LOW 966G>A Gly322Gly
M0038132 HLIDELMF_00021 22121 4 Skin 0.17 protein_coding synonymous_variant LOW 633T>C Ser211Ser
M0038133 HLIDELMF_00021 22127 4 Skin 0.17 protein_coding synonymous_variant LOW 627G>A Glu209Glu
M0038134 HLIDELMF_00021 21857 3 Skin 0.13 protein_coding synonymous_variant LOW 897A>G Val299Val
M0038135 HLIDELMF_00028 31073 3 Skin 0.13 protein_coding synonymous_variant LOW 1659T>C Asp553Asp
M0038136 HLIDELMF_00012 12645 3 Skin 0.13 protein_coding synonymous_variant LOW 759G>A Gln253Gln
M0038137 HLIDELMF_00012 12654 3 Skin 0.13 protein_coding synonymous_variant LOW 768T>C Ile256Ile
M0038138 HLIDELMF_00012 12657 3 Skin 0.13 protein_coding synonymous_variant LOW 771C>T Ser257Ser
M0038139 HLIDELMF_00013 13011 3 Skin 0.13 protein_coding synonymous_variant LOW 78A>G Pro26Pro






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
HLIDELMF_00005 QIP29626.1|GT26 84.9 2.06e-147 40 278 0.8566 0.9637





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term