Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2350
  Reference Plasmid   1111525849767596_bin.2__k141_12459
  Reference Plasmid Size   20136
  Reference Plasmid GC Content   0.66
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0040741 GCJOECLG_00013 12426 3 Skin 0.20 protein_coding synonymous_variant LOW 1314C>T Asp438Asp
M0040742 GCJOECLG_00013 12672 3 Skin 0.20 protein_coding synonymous_variant LOW 1068T>G Val356Val
M0040743 GCJOECLG_00013 12924 5 Skin 0.33 protein_coding synonymous_variant LOW 816T>C Ser272Ser
M0040744 GCJOECLG_00013 13431 4 Skin 0.27 protein_coding synonymous_variant LOW 309C>G Leu103Leu
M0040745 GCJOECLG_00013 13734 5 Skin 0.33 protein_coding missense_variant MODERATE 6C>G Asn2Lys
M0040746 GCJOECLG_00014 13895 5 Skin 0.33 protein_coding missense_variant MODERATE 100T>G Leu34Val
M0040747 GCJOECLG_00014 13915 5 Skin 0.33 protein_coding missense_variant MODERATE 120G>T Met40Ile
M0040748 GCJOECLG_00014 13964 5 Skin 0.33 protein_coding missense_variant MODERATE 169T>C Trp57Arg
M0040749 GCJOECLG_00014 14106 4 Skin 0.27 protein_coding missense_variant MODERATE 311T>C Leu104Ser
M0040750 GCJOECLG_00014 14111 4 Skin 0.27 protein_coding synonymous_variant LOW 316T>C Leu106Leu
M0040751 GCJOECLG_00014 14163 4 Skin 0.27 protein_coding missense_variant MODERATE 368T>G Leu123Arg
M0040752 GCJOECLG_00014 14186 4 Skin 0.27 protein_coding missense_variant MODERATE 391C>G His131Asp
M0040753 GCJOECLG_00014 14346 4 Skin 0.27 protein_coding missense_variant MODERATE 551A>G His184Arg
M0040754 GCJOECLG_00013 15242 3 Skin 0.20 protein_coding upstream_gene_variant MODIFIER -1503T>C None
M0040755 GCJOECLG_00016 15438 3 Skin 0.20 protein_coding synonymous_variant LOW 150A>C Ala50Ala
M0040756 GCJOECLG_00016 15591 5 Skin 0.33 protein_coding synonymous_variant LOW 303T>C His101His
M0040757 GCJOECLG_00016 15741 4 Skin 0.27 protein_coding synonymous_variant LOW 453T>C Ile151Ile
M0040758 GCJOECLG_00013 16158 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -2419T>C None
M0040759 GCJOECLG_00017 16243 4 Skin 0.27 protein_coding synonymous_variant LOW 45A>G Thr15Thr
M0040760 GCJOECLG_00017 16496 3 Skin 0.20 protein_coding missense_variant MODERATE 298A>G Thr100Ala
M0040761 GCJOECLG_00017 17517 4 Skin 0.27 protein_coding missense_variant MODERATE 1319G>A Arg440Lys
M0040762 GCJOECLG_00017 17640 4 Skin 0.27 protein_coding missense_variant MODERATE 1442C>A Ala481Asp
M0040763 GCJOECLG_00017 17857 4 Skin 0.27 protein_coding synonymous_variant LOW 1659T>C Phe553Phe
M0040764 GCJOECLG_00017 17996 4 Skin 0.27 protein_coding missense_variant MODERATE 1798C>G Leu600Val
M0040765 GCJOECLG_00007 6379 4 Skin 0.27 protein_coding synonymous_variant LOW 522A>G Glu174Glu
M0040766 GCJOECLG_00007 6424 3 Skin 0.20 protein_coding synonymous_variant LOW 477G>C Thr159Thr
M0040767 GCJOECLG_00007 6427 3 Skin 0.20 protein_coding synonymous_variant LOW 474T>C Asp158Asp
M0040768 GCJOECLG_00007 6430 3 Skin 0.20 protein_coding synonymous_variant LOW 471C>G Thr157Thr
M0040769 GCJOECLG_00007 6717 4 Skin 0.27 protein_coding synonymous_variant LOW 184C>T Leu62Leu
M0040770 GCJOECLG_00007 6838 4 Skin 0.27 protein_coding synonymous_variant LOW 63T>C Thr21Thr
M0040771 GCJOECLG_00008 7356 4 Skin 0.27 protein_coding missense_variant MODERATE 403A>G Asn135Asp
M0040772 GCJOECLG_00009 7759 3 Skin 0.20 protein_coding synonymous_variant LOW 309T>C Asn103Asn
M0040773 GCJOECLG_00009 7771 4 Skin 0.27 protein_coding synonymous_variant LOW 321C>G Thr107Thr
M0040774 GCJOECLG_00009 7795 5 Skin 0.33 protein_coding missense_variant MODERATE 345A>C Lys115Asn
M0040775 GCJOECLG_00009 7909 4 Skin 0.27 protein_coding synonymous_variant LOW 459G>C Thr153Thr
M0040776 GCJOECLG_00010 8555 4 Skin 0.27 protein_coding synonymous_variant LOW 744C>T Gly248Gly
M0040777 GCJOECLG_00010 8666 4 Skin 0.27 protein_coding synonymous_variant LOW 633T>C Asn211Asn
M0040778 GCJOECLG_00010 8810 6 Skin 0.40 protein_coding synonymous_variant LOW 489T>C Arg163Arg
M0040779 GCJOECLG_00010 8864 6 Skin 0.40 protein_coding synonymous_variant LOW 435T>C Ser145Ser
M0040780 GCJOECLG_00010 8900 6 Skin 0.40 protein_coding synonymous_variant LOW 399A>G Leu133Leu
M0040781 GCJOECLG_00010 8903 6 Skin 0.40 protein_coding missense_variant MODERATE 396C>G His132Gln
M0040782 GCJOECLG_00010 8904 6 Skin 0.40 protein_coding missense_variant MODERATE 395A>G His132Arg
M0040783 GCJOECLG_00010 8905 6 Skin 0.40 protein_coding missense_variant MODERATE 394C>A His132Asn
M0040784 GCJOECLG_00010 8915 6 Skin 0.40 protein_coding synonymous_variant LOW 384G>A Glu128Glu
M0040785 GCJOECLG_00010 8918 6 Skin 0.40 protein_coding synonymous_variant LOW 381C>G Ala127Ala
M0040786 GCJOECLG_00010 8966 6 Skin 0.40 protein_coding synonymous_variant LOW 333G>T Gly111Gly
M0040787 GCJOECLG_00010 9023 6 Skin 0.40 protein_coding synonymous_variant LOW 276C>T Ala92Ala
M0040788 GCJOECLG_00010 9026 6 Skin 0.40 protein_coding synonymous_variant LOW 273T>C Pro91Pro
M0040789 GCJOECLG_00010 9294 5 Skin 0.33 protein_coding missense_variant MODERATE 5T>C Ile2Thr
M0040790 GCJOECLG_00007 9469 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -2569A>C None
M0040791 GCJOECLG_00011 9996 5 Skin 0.33 protein_coding missense_variant MODERATE 523C>A Leu175Met
M0040792 GCJOECLG_00011 10403 4 Skin 0.27 protein_coding synonymous_variant LOW 930A>C Pro310Pro
M0040793 GCJOECLG_00011 10661 3 Skin 0.20 protein_coding synonymous_variant LOW 1188T>C Arg396Arg
M0040794 GCJOECLG_00012 10895 3 Skin 0.20 protein_coding synonymous_variant LOW 138T>C Ala46Ala
M0040795 GCJOECLG_00012 10937 4 Skin 0.27 protein_coding synonymous_variant LOW 180A>G Val60Val
M0040796 GCJOECLG_00012 10964 4 Skin 0.27 protein_coding synonymous_variant LOW 207G>C Arg69Arg
M0040797 GCJOECLG_00012 10965 4 Skin 0.27 protein_coding missense_variant MODERATE 208G>A Val70Ile
M0040798 GCJOECLG_00012 10970 4 Skin 0.27 protein_coding synonymous_variant LOW 213A>G Ser71Ser
M0040799 GCJOECLG_00012 10991 4 Skin 0.27 protein_coding synonymous_variant LOW 234C>T Asp78Asp
M0040800 GCJOECLG_00012 11084 3 Skin 0.20 protein_coding synonymous_variant LOW 327T>C Ala109Ala
M0040801 GCJOECLG_00012 11093 3 Skin 0.20 protein_coding synonymous_variant LOW 336C>G Pro112Pro
M0040802 GCJOECLG_00012 11437 3 Skin 0.20 protein_coding missense_variant MODERATE 680T>C Val227Ala
M0040803 GCJOECLG_00013 13428 3 Skin 0.20 protein_coding synonymous_variant LOW 312C>G Ala104Ala
M0040804 GCJOECLG_00013 13590 3 Skin 0.20 protein_coding synonymous_variant LOW 150G>A Leu50Leu
M0040805 GCJOECLG_00013 13643 3 Skin 0.20 protein_coding synonymous_variant LOW 97C>T Leu33Leu
M0040806 GCJOECLG_00013 13644 3 Skin 0.20 protein_coding synonymous_variant LOW 96G>A Pro32Pro
M0040807 GCJOECLG_00013 13656 3 Skin 0.20 protein_coding synonymous_variant LOW 84T>C Arg28Arg
M0040808 GCJOECLG_00013 13659 3 Skin 0.20 protein_coding synonymous_variant LOW 81T>G Thr27Thr
M0040809 GCJOECLG_00013 13666 3 Skin 0.20 protein_coding missense_variant MODERATE 74G>C Ser25Thr
M0040810 GCJOECLG_00013 13667 3 Skin 0.20 protein_coding missense_variant MODERATE 73A>T Ser25Cys
M0040811 GCJOECLG_00013 13668 3 Skin 0.20 protein_coding synonymous_variant LOW 72C>A Ser24Ser
M0040812 GCJOECLG_00013 13671 3 Skin 0.20 protein_coding synonymous_variant LOW 69C>G Gly23Gly
M0040813 GCJOECLG_00013 13674 3 Skin 0.20 protein_coding synonymous_variant LOW 66T>G Leu22Leu
M0040814 GCJOECLG_00013 13680 3 Skin 0.20 protein_coding synonymous_variant LOW 60C>G Gly20Gly
M0040815 GCJOECLG_00013 13683 3 Skin 0.20 protein_coding synonymous_variant LOW 57T>C Val19Val
M0040816 GCJOECLG_00014 13889 3 Skin 0.20 protein_coding missense_variant MODERATE 94A>C Lys32Gln
M0040817 GCJOECLG_00014 13909 3 Skin 0.20 protein_coding synonymous_variant LOW 114G>A Ala38Ala
M0040818 GCJOECLG_00014 13914 3 Skin 0.20 protein_coding missense_variant MODERATE 119T>G Met40Arg
M0040819 GCJOECLG_00014 13921 3 Skin 0.20 protein_coding synonymous_variant LOW 126C>T Gly42Gly
M0040820 GCJOECLG_00014 13956 3 Skin 0.20 protein_coding missense_variant MODERATE 161G>A Arg54Gln
M0040821 GCJOECLG_00014 13986 3 Skin 0.20 protein_coding missense_variant MODERATE 191C>T Ala64Val
M0040822 GCJOECLG_00014 13990 3 Skin 0.20 protein_coding synonymous_variant LOW 195T>C Gly65Gly
M0040823 GCJOECLG_00014 13993 3 Skin 0.20 protein_coding synonymous_variant LOW 198A>G Glu66Glu
M0040824 GCJOECLG_00014 13994 3 Skin 0.20 protein_coding missense_variant MODERATE 199A>T Ile67Phe
M0040825 GCJOECLG_00014 13996 3 Skin 0.20 protein_coding missense_variant MODERATE 201C>G Ile67Met
M0040826 GCJOECLG_00014 14136 3 Skin 0.20 protein_coding missense_variant MODERATE 341A>C Glu114Ala
M0040827 GCJOECLG_00014 14155 3 Skin 0.20 protein_coding missense_variant MODERATE 360G>C Gln120His
M0040828 GCJOECLG_00017 16684 3 Skin 0.20 protein_coding synonymous_variant LOW 486G>A Arg162Arg
M0040829 GCJOECLG_00018 18564 3 Skin 0.20 protein_coding synonymous_variant LOW 114T>C Thr38Thr
M0040830 GCJOECLG_00018 18567 3 Skin 0.20 protein_coding synonymous_variant LOW 117C>T Ala39Ala
M0040831 GCJOECLG_00001 469 4 Skin 0.27 protein_coding synonymous_variant LOW 414C>G Arg138Arg
M0040832 GCJOECLG_00001 649 4 Skin 0.27 protein_coding synonymous_variant LOW 594A>G Glu198Glu
M0040833 GCJOECLG_00001 749 4 Skin 0.27 protein_coding synonymous_variant LOW 694T>C Leu232Leu
M0040834 GCJOECLG_00001 1255 4 Skin 0.27 protein_coding synonymous_variant LOW 1200A>G Val400Val
M0040835 GCJOECLG_00001 1279 4 Skin 0.27 protein_coding synonymous_variant LOW 1224A>G Gly408Gly
M0040836 GCJOECLG_00004 1456 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -1603C>A None
M0040837 GCJOECLG_00002 1703 3 Skin 0.20 protein_coding synonymous_variant LOW 717A>G Val239Val
M0040838 GCJOECLG_00002 2951 5 Skin 0.33 protein_coding upstream_gene_variant MODIFIER -532T>C None
M0040839 GCJOECLG_00004 3356 5 Skin 0.33 protein_coding missense_variant MODERATE 298A>G Met100Val
M0040840 GCJOECLG_00004 3485 4 Skin 0.27 protein_coding missense_variant MODERATE 427C>A His143Asn
M0040841 GCJOECLG_00004 3486 4 Skin 0.27 protein_coding missense_variant MODERATE 428A>G His143Arg
M0040842 GCJOECLG_00004 3514 4 Skin 0.27 protein_coding synonymous_variant LOW 456T>C Leu152Leu
M0040843 GCJOECLG_00004 3664 4 Skin 0.27 protein_coding synonymous_variant LOW 606T>C Gly202Gly
M0040844 GCJOECLG_00005 3890 3 Skin 0.20 protein_coding synonymous_variant LOW 540G>C Arg180Arg
M0040845 GCJOECLG_00006 5166 3 Skin 0.20 protein_coding synonymous_variant LOW 708T>C His236His
M0040846 GCJOECLG_00006 5862 3 Skin 0.20 protein_coding synonymous_variant LOW 1404C>G Ala468Ala
M0040847 GCJOECLG_00002 2770 4 Skin 0.27 protein_coding upstream_gene_variant MODIFIER -351C>T None
M0040848 GCJOECLG_00004 3428 4 Skin 0.27 protein_coding missense_variant MODERATE 370A>G Lys124Glu
M0040849 GCJOECLG_00004 3463 3 Skin 0.20 protein_coding synonymous_variant LOW 405G>T Ser135Ser
M0040850 GCJOECLG_00004 3545 3 Skin 0.20 protein_coding missense_variant MODERATE 487C>T Leu163Phe
M0040851 GCJOECLG_00004 3562 3 Skin 0.20 protein_coding synonymous_variant LOW 504G>A Ala168Ala
M0040852 GCJOECLG_00007 6550 3 Skin 0.20 protein_coding synonymous_variant LOW 351G>A Val117Val
M0040853 GCJOECLG_00007 6810 3 Skin 0.20 protein_coding missense_variant MODERATE 91G>A Glu31Lys
M0040854 GCJOECLG_00009 7747 4 Skin 0.27 protein_coding synonymous_variant LOW 297C>T Asn99Asn
M0040855 GCJOECLG_00009 7750 3 Skin 0.20 protein_coding synonymous_variant LOW 300C>G Val100Val
M0040856 GCJOECLG_00001 1432 3 Skin 0.20 protein_coding synonymous_variant LOW 1377A>G Gly459Gly
M0040857 GCJOECLG_00002 2063 3 Skin 0.20 protein_coding synonymous_variant LOW 357T>C Phe119Phe
M0040858 GCJOECLG_00002 2111 3 Skin 0.20 protein_coding synonymous_variant LOW 309G>A Gly103Gly
M0040859 GCJOECLG_00010 8342 3 Skin 0.20 protein_coding missense_variant MODERATE 957A>C Glu319Asp






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term