Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2362
  Reference Plasmid   1111525849768046_bin.37__k141_101528
  Reference Plasmid Size   16544
  Reference Plasmid GC Content   0.43
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0118773 MPDJKIEM_00003 8640 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -3400T>G None
M0118774 MPDJKIEM_00003 8670 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -3430C>T None
M0118775 MPDJKIEM_00003 8749 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -3509A>T None
M0118776 MPDJKIEM_00003 8798 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -3558A>T None
M0118777 MPDJKIEM_00003 8833 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -3593C>A None
M0118778 MPDJKIEM_00003 8848 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -3608T>C None
M0118779 MPDJKIEM_00006 8916 6 Oral 0.46 protein_coding synonymous_variant LOW 1260C>A Gly420Gly
M0118780 MPDJKIEM_00006 9009 5 Oral 0.38 protein_coding synonymous_variant LOW 1167A>T Val389Val
M0118781 MPDJKIEM_00006 9063 7 Oral 0.54 protein_coding synonymous_variant LOW 1113G>A Gln371Gln
M0118782 MPDJKIEM_00006 9202 7 Oral 0.54 protein_coding missense_variant MODERATE 974G>A Arg325Lys
M0118783 MPDJKIEM_00006 9243 6 Oral 0.46 protein_coding synonymous_variant LOW 933C>T Gly311Gly
M0118784 MPDJKIEM_00006 9345 6 Oral 0.46 protein_coding synonymous_variant LOW 831T>C Asn277Asn
M0118785 MPDJKIEM_00006 9486 6 Oral 0.46 protein_coding synonymous_variant LOW 690T>C Thr230Thr
M0118786 MPDJKIEM_00006 9573 5 Oral 0.38 protein_coding synonymous_variant LOW 603T>C Val201Val
M0118787 MPDJKIEM_00006 9687 4 Oral 0.31 protein_coding synonymous_variant LOW 489T>A Ile163Ile
M0118788 MPDJKIEM_00006 9759 6 Oral 0.46 protein_coding synonymous_variant LOW 417C>T Arg139Arg
M0118789 MPDJKIEM_00006 9962 3 Oral 0.23 protein_coding synonymous_variant LOW 214C>A Arg72Arg
M0118790 MPDJKIEM_00003 10201 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -4961C>T None
M0118791 MPDJKIEM_00007 10579 4 Oral 0.31 protein_coding synonymous_variant LOW 246C>T Asp82Asp
M0118792 MPDJKIEM_00007 10801 4 Oral 0.31 protein_coding synonymous_variant LOW 468T>C Asp156Asp
M0118793 MPDJKIEM_00007 10954 5 Oral 0.38 protein_coding synonymous_variant LOW 621T>C Phe207Phe
M0118794 MPDJKIEM_00007 10957 5 Oral 0.38 protein_coding synonymous_variant LOW 624T>A Ala208Ala
M0118795 MPDJKIEM_00007 11125 7 Oral 0.54 protein_coding synonymous_variant LOW 792T>C Asn264Asn
M0118796 MPDJKIEM_00007 11177 7 Oral 0.54 protein_coding missense_variant MODERATE 844G>A Asp282Asn
M0118797 MPDJKIEM_00007 11542 4 Oral 0.31 protein_coding synonymous_variant LOW 1209T>A Ser403Ser
M0118798 MPDJKIEM_00007 11593 7 Oral 0.54 protein_coding synonymous_variant LOW 1260A>G Glu420Glu
M0118799 MPDJKIEM_00004 11664 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -4558A>G None
M0118800 MPDJKIEM_00004 11713 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -4607C>A None
M0118801 MPDJKIEM_00008 11952 4 Oral 0.31 protein_coding synonymous_variant LOW 138T>C Asp46Asp
M0118802 MPDJKIEM_00008 11967 7 Oral 0.54 protein_coding synonymous_variant LOW 153G>A Gly51Gly
M0118803 MPDJKIEM_00008 12111 6 Oral 0.46 protein_coding synonymous_variant LOW 297C>T Gly99Gly
M0118804 MPDJKIEM_00008 12171 5 Oral 0.38 protein_coding synonymous_variant LOW 357C>T Asn119Asn
M0118805 MPDJKIEM_00008 12303 3 Oral 0.23 protein_coding synonymous_variant LOW 489C>T Pro163Pro
M0118806 MPDJKIEM_00008 12398 6 Oral 0.46 protein_coding missense_variant MODERATE 584C>A Pro195His
M0118807 MPDJKIEM_00008 12499 6 Oral 0.46 protein_coding missense_variant MODERATE 685A>G Met229Val
M0118808 MPDJKIEM_00008 12642 3 Oral 0.23 protein_coding synonymous_variant LOW 828C>T Asp276Asp
M0118809 MPDJKIEM_00008 12675 3 Oral 0.23 protein_coding synonymous_variant LOW 861T>C Ile287Ile
M0118810 MPDJKIEM_00008 12678 5 Oral 0.38 protein_coding synonymous_variant LOW 864T>C Asp288Asp
M0118811 MPDJKIEM_00008 12951 4 Oral 0.31 protein_coding synonymous_variant LOW 1137C>T Tyr379Tyr
M0118812 MPDJKIEM_00008 13008 5 Oral 0.38 protein_coding synonymous_variant LOW 1194T>C His398His
M0118813 MPDJKIEM_00008 13191 5 Oral 0.38 protein_coding synonymous_variant LOW 1377T>A Ala459Ala
M0118814 MPDJKIEM_00008 13192 5 Oral 0.38 protein_coding missense_variant MODERATE 1378G>A Val460Ile
M0118815 MPDJKIEM_00008 13206 6 Oral 0.46 protein_coding synonymous_variant LOW 1392C>A Gly464Gly
M0118816 MPDJKIEM_00008 13269 4 Oral 0.31 protein_coding synonymous_variant LOW 1455G>A Leu485Leu
M0118817 MPDJKIEM_00008 13360 5 Oral 0.38 protein_coding missense_variant MODERATE 1546A>T Ser516Cys
M0118818 MPDJKIEM_00008 13395 3 Oral 0.23 protein_coding synonymous_variant LOW 1581C>T Ser527Ser
M0118819 MPDJKIEM_00008 13563 5 Oral 0.38 protein_coding synonymous_variant LOW 1749T>C Asp583Asp
M0118820 MPDJKIEM_00008 13578 5 Oral 0.38 protein_coding synonymous_variant LOW 1764T>C Tyr588Tyr
M0118821 MPDJKIEM_00008 13581 6 Oral 0.46 protein_coding synonymous_variant LOW 1767A>G Lys589Lys
M0118822 MPDJKIEM_00008 13599 5 Oral 0.38 protein_coding synonymous_variant LOW 1785G>A Lys595Lys
M0118823 MPDJKIEM_00008 13710 6 Oral 0.46 protein_coding synonymous_variant LOW 1896A>C Gly632Gly
M0118824 MPDJKIEM_00008 13839 5 Oral 0.38 protein_coding synonymous_variant LOW 2025A>G Val675Val
M0118825 MPDJKIEM_00008 13866 5 Oral 0.38 protein_coding synonymous_variant LOW 2052C>T Gly684Gly
M0118826 MPDJKIEM_00008 14088 6 Oral 0.46 protein_coding synonymous_variant LOW 2274A>G Leu758Leu
M0118827 MPDJKIEM_00008 14097 6 Oral 0.46 protein_coding synonymous_variant LOW 2283C>T Gly761Gly
M0118828 MPDJKIEM_00008 14127 6 Oral 0.46 protein_coding synonymous_variant LOW 2313T>C Gly771Gly
M0118829 MPDJKIEM_00008 14154 6 Oral 0.46 protein_coding synonymous_variant LOW 2340T>G Ala780Ala
M0118830 MPDJKIEM_00008 14157 6 Oral 0.46 protein_coding synonymous_variant LOW 2343A>G Lys781Lys
M0118831 MPDJKIEM_00008 14172 6 Oral 0.46 protein_coding synonymous_variant LOW 2358T>C Ile786Ile
M0118832 MPDJKIEM_00008 14190 6 Oral 0.46 protein_coding synonymous_variant LOW 2376C>T Leu792Leu
M0118833 MPDJKIEM_00008 14193 5 Oral 0.38 protein_coding synonymous_variant LOW 2379A>G Lys793Lys
M0118834 MPDJKIEM_00006 14598 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -4423C>T None
M0118835 MPDJKIEM_00006 14615 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -4440A>G None
M0118836 MPDJKIEM_00009 14782 5 Oral 0.38 protein_coding synonymous_variant LOW 111G>A Gln37Gln
M0118837 MPDJKIEM_00009 14860 5 Oral 0.38 protein_coding synonymous_variant LOW 189T>C Ala63Ala
M0118838 MPDJKIEM_00009 14944 6 Oral 0.46 protein_coding synonymous_variant LOW 273A>T Ile91Ile
M0118839 MPDJKIEM_00009 15097 6 Oral 0.46 protein_coding synonymous_variant LOW 426C>T Pro142Pro
M0118840 MPDJKIEM_00009 15191 4 Oral 0.31 protein_coding missense_variant MODERATE 520T>A Cys174Ser
M0118841 MPDJKIEM_00009 15193 4 Oral 0.31 protein_coding synonymous_variant LOW 522C>T Cys174Cys
M0118842 MPDJKIEM_00009 15220 5 Oral 0.38 protein_coding synonymous_variant LOW 549T>C Ile183Ile
M0118843 MPDJKIEM_00009 15262 5 Oral 0.38 protein_coding synonymous_variant LOW 591T>C Thr197Thr
M0118844 MPDJKIEM_00009 15466 5 Oral 0.38 protein_coding synonymous_variant LOW 795C>A Val265Val
M0118845 MPDJKIEM_00009 15475 4 Oral 0.31 protein_coding synonymous_variant LOW 804A>G Glu268Glu
M0118846 MPDJKIEM_00009 15532 5 Oral 0.38 protein_coding synonymous_variant LOW 861C>T Cys287Cys
M0118847 MPDJKIEM_00009 15569 4 Oral 0.31 protein_coding missense_variant MODERATE 898G>A Val300Ile
M0118848 MPDJKIEM_00009 15796 4 Oral 0.31 protein_coding synonymous_variant LOW 1125T>C Tyr375Tyr
M0118849 MPDJKIEM_00009 16060 3 Oral 0.23 protein_coding synonymous_variant LOW 1389G>A Leu463Leu
M0118850 MPDJKIEM_00009 16063 3 Oral 0.23 protein_coding synonymous_variant LOW 1392G>A Ser464Ser
M0118851 MPDJKIEM_00009 16237 3 Oral 0.23 protein_coding synonymous_variant LOW 1566C>T Arg522Arg
M0118852 MPDJKIEM_00009 16258 3 Oral 0.23 protein_coding synonymous_variant LOW 1587T>C Arg529Arg
M0118853 MPDJKIEM_00009 16261 4 Oral 0.31 protein_coding synonymous_variant LOW 1590T>C Tyr530Tyr
M0118854 MPDJKIEM_00009 16266 4 Oral 0.31 protein_coding missense_variant MODERATE 1595T>A Phe532Tyr
M0118855 MPDJKIEM_00009 16267 4 Oral 0.31 protein_coding synonymous_variant LOW 1596T>C Phe532Phe
M0118856 MPDJKIEM_00007 16339 5 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4698T>A None
M0118857 MPDJKIEM_00007 16340 5 Oral 0.38 protein_coding downstream_gene_variant MODIFIER *4699A>T None
M0118858 MPDJKIEM_00007 16445 4 Oral 0.31 protein_coding downstream_gene_variant MODIFIER *4804T>C None
M0118859 MPDJKIEM_00007 16454 4 Oral 0.31 protein_coding downstream_gene_variant MODIFIER *4813G>A None
M0118860 MPDJKIEM_00007 16458 4 Oral 0.31 protein_coding downstream_gene_variant MODIFIER *4817G>A None
M0118861 MPDJKIEM_00002 97 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2893G>A None
M0118862 MPDJKIEM_00002 139 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2851G>A None
M0118863 MPDJKIEM_00002 286 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2704T>C None
M0118864 MPDJKIEM_00002 337 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2653T>A None
M0118865 MPDJKIEM_00002 339 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2651A>G None
M0118866 MPDJKIEM_00002 409 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2581A>G None
M0118867 MPDJKIEM_00002 418 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2572T>G None
M0118868 MPDJKIEM_00002 421 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2569T>A None
M0118869 MPDJKIEM_00002 424 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2566A>T None
M0118870 MPDJKIEM_00002 463 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -2527A>G None
M0118871 MPDJKIEM_00002 553 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2437T>G None
M0118872 MPDJKIEM_00002 583 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -2407T>C None
M0118873 MPDJKIEM_00002 610 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2380A>T None
M0118874 MPDJKIEM_00002 622 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -2368T>C None
M0118875 MPDJKIEM_00002 637 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2353A>G None
M0118876 MPDJKIEM_00002 655 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -2335A>G None
M0118877 MPDJKIEM_00002 682 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2308G>A None
M0118878 MPDJKIEM_00002 684 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -2306C>G None
M0118879 MPDJKIEM_00002 691 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2299G>A None
M0118880 MPDJKIEM_00002 751 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2239T>C None
M0118881 MPDJKIEM_00002 802 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2188A>G None
M0118882 MPDJKIEM_00002 1051 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1939G>A None
M0118883 MPDJKIEM_00002 1099 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -1891C>A None
M0118884 MPDJKIEM_00002 1219 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -1771A>G None
M0118885 MPDJKIEM_00002 1228 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1762A>G None
M0118886 MPDJKIEM_00002 1447 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1543G>A None
M0118887 MPDJKIEM_00002 1483 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1507A>T None
M0118888 MPDJKIEM_00002 1596 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -1394C>G None
M0118889 MPDJKIEM_00002 1711 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1279G>A None
M0118890 MPDJKIEM_00002 1714 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -1276G>A None
M0118891 MPDJKIEM_00002 1738 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -1252T>G None
M0118892 MPDJKIEM_00002 1747 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1243C>T None
M0118893 MPDJKIEM_00002 1867 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -1123A>T None
M0118894 MPDJKIEM_00002 2164 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -826A>T None
M0118895 MPDJKIEM_00002 2191 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -799T>A None
M0118896 MPDJKIEM_00002 2203 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -787G>A None
M0118897 MPDJKIEM_00002 2209 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -781G>T None
M0118898 MPDJKIEM_00002 2250 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -740C>T None
M0118899 MPDJKIEM_00002 2455 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -535C>T None
M0118900 MPDJKIEM_00002 2502 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -488T>C None
M0118901 MPDJKIEM_00002 2522 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -468T>C None
M0118902 MPDJKIEM_00002 2802 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -188T>C None
M0118903 MPDJKIEM_00002 2825 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -165T>A None
M0118904 MPDJKIEM_00002 2827 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -163T>G None
M0118905 MPDJKIEM_00002 2829 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -161A>G None
M0118906 MPDJKIEM_00002 3088 4 Oral 0.31 protein_coding synonymous_variant LOW 99G>A Glu33Glu
M0118907 MPDJKIEM_00002 3171 4 Oral 0.31 protein_coding missense_variant MODERATE 182G>A Gly61Glu
M0118908 MPDJKIEM_00002 3223 5 Oral 0.38 protein_coding synonymous_variant LOW 234C>T Asn78Asn
M0118909 MPDJKIEM_00002 3238 8 Oral 0.62 protein_coding synonymous_variant LOW 249A>G Ala83Ala
M0118910 MPDJKIEM_00002 3239 8 Oral 0.62 protein_coding synonymous_variant LOW 250C>T Leu84Leu
M0118911 MPDJKIEM_00002 3296 3 Oral 0.23 protein_coding missense_variant MODERATE 307A>C Ser103Arg
M0118912 MPDJKIEM_00002 3565 3 Oral 0.23 protein_coding synonymous_variant LOW 576G>A Gln192Gln
M0118913 MPDJKIEM_00002 3733 8 Oral 0.62 protein_coding synonymous_variant LOW 744C>G Ala248Ala
M0118914 MPDJKIEM_00002 3982 5 Oral 0.38 protein_coding synonymous_variant LOW 993A>T Pro331Pro
M0118915 MPDJKIEM_00002 4162 6 Oral 0.46 protein_coding synonymous_variant LOW 1173C>T Thr391Thr
M0118916 MPDJKIEM_00001 4379 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -1432T>C None
M0118917 MPDJKIEM_00001 4382 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1435C>T None
M0118918 MPDJKIEM_00001 4482 7 Oral 0.54 protein_coding upstream_gene_variant MODIFIER -1535A>G None
M0118919 MPDJKIEM_00001 4509 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -1562A>G None
M0118920 MPDJKIEM_00001 4526 8 Oral 0.62 protein_coding upstream_gene_variant MODIFIER -1579T>C None
M0118921 MPDJKIEM_00003 4845 8 Oral 0.62 protein_coding synonymous_variant LOW 396T>C Ala132Ala
M0118922 MPDJKIEM_00003 4863 7 Oral 0.54 protein_coding synonymous_variant LOW 378G>A Arg126Arg
M0118923 MPDJKIEM_00003 4884 5 Oral 0.38 protein_coding synonymous_variant LOW 357C>A Ala119Ala
M0118924 MPDJKIEM_00003 5178 8 Oral 0.62 protein_coding synonymous_variant LOW 63T>C Ala21Ala
M0118925 MPDJKIEM_00001 5243 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2296T>C None
M0118926 MPDJKIEM_00001 5244 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2297G>A None
M0118927 MPDJKIEM_00001 5245 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2298A>T None
M0118928 MPDJKIEM_00001 5258 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -2311T>C None
M0118929 MPDJKIEM_00004 5295 8 Oral 0.62 protein_coding synonymous_variant LOW 1812A>G Glu604Glu
M0118930 MPDJKIEM_00004 5436 8 Oral 0.62 protein_coding synonymous_variant LOW 1671G>A Lys557Lys
M0118931 MPDJKIEM_00004 5565 7 Oral 0.54 protein_coding missense_variant MODERATE 1542C>A Asp514Glu
M0118932 MPDJKIEM_00004 5568 8 Oral 0.62 protein_coding synonymous_variant LOW 1539T>A Ala513Ala
M0118933 MPDJKIEM_00004 5613 7 Oral 0.54 protein_coding synonymous_variant LOW 1494A>G Leu498Leu
M0118934 MPDJKIEM_00004 5742 8 Oral 0.62 protein_coding synonymous_variant LOW 1365C>G Ala455Ala
M0118935 MPDJKIEM_00004 5793 5 Oral 0.38 protein_coding synonymous_variant LOW 1314T>C Asp438Asp
M0118936 MPDJKIEM_00004 6129 4 Oral 0.31 protein_coding synonymous_variant LOW 978C>T Leu326Leu
M0118937 MPDJKIEM_00004 6168 3 Oral 0.23 protein_coding missense_variant MODERATE 939T>A Asp313Glu
M0118938 MPDJKIEM_00004 6319 4 Oral 0.31 protein_coding missense_variant MODERATE 788A>T Lys263Met
M0118939 MPDJKIEM_00004 6420 3 Oral 0.23 protein_coding synonymous_variant LOW 687T>A Ala229Ala
M0118940 MPDJKIEM_00004 6423 7 Oral 0.54 protein_coding synonymous_variant LOW 684G>A Gln228Gln
M0118941 MPDJKIEM_00004 6474 3 Oral 0.23 protein_coding synonymous_variant LOW 633G>A Glu211Glu
M0118942 MPDJKIEM_00004 6476 3 Oral 0.23 protein_coding missense_variant MODERATE 631G>C Glu211Gln
M0118943 MPDJKIEM_00004 6477 3 Oral 0.23 protein_coding missense_variant MODERATE 630A>C Glu210Asp
M0118944 MPDJKIEM_00004 6486 3 Oral 0.23 protein_coding synonymous_variant LOW 621C>T His207His
M0118945 MPDJKIEM_00004 6489 3 Oral 0.23 protein_coding synonymous_variant LOW 618A>G Lys206Lys
M0118946 MPDJKIEM_00004 6498 3 Oral 0.23 protein_coding synonymous_variant LOW 609A>C Ala203Ala
M0118947 MPDJKIEM_00004 6508 3 Oral 0.23 protein_coding missense_variant MODERATE 599G>A Cys200Tyr
M0118948 MPDJKIEM_00004 6513 3 Oral 0.23 protein_coding synonymous_variant LOW 594C>T Gly198Gly
M0118949 MPDJKIEM_00004 6516 3 Oral 0.23 protein_coding synonymous_variant LOW 591G>T Val197Val
M0118950 MPDJKIEM_00004 6518 3 Oral 0.23 protein_coding missense_variant MODERATE 589G>A Val197Met
M0118951 MPDJKIEM_00004 6618 8 Oral 0.62 protein_coding synonymous_variant LOW 489C>T Val163Val
M0118952 MPDJKIEM_00004 6660 6 Oral 0.46 protein_coding synonymous_variant LOW 447T>C Ile149Ile
M0118953 MPDJKIEM_00004 6822 3 Oral 0.23 protein_coding synonymous_variant LOW 285T>G Val95Val
M0118954 MPDJKIEM_00002 442 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2548G>A None
M0118955 MPDJKIEM_00002 731 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2259A>G None
M0118956 MPDJKIEM_00002 732 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -2258T>C None
M0118957 MPDJKIEM_00002 778 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -2212A>G None
M0118958 MPDJKIEM_00002 1450 6 Oral 0.46 protein_coding upstream_gene_variant MODIFIER -1540T>C None
M0118959 MPDJKIEM_00002 1452 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1538G>A None
M0118960 MPDJKIEM_00002 1606 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1384T>G None
M0118961 MPDJKIEM_00002 1870 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1120G>A None
M0118962 MPDJKIEM_00002 2548 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -442C>T None
M0118963 MPDJKIEM_00002 2605 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -385T>C None
M0118964 MPDJKIEM_00002 4288 4 Oral 0.31 protein_coding synonymous_variant LOW 1299C>T Thr433Thr
M0118965 MPDJKIEM_00001 4394 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1447A>G None
M0118966 MPDJKIEM_00001 4493 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1546G>A None
M0118967 MPDJKIEM_00003 4980 3 Oral 0.23 protein_coding synonymous_variant LOW 261C>T Ser87Ser
M0118968 MPDJKIEM_00003 4986 7 Oral 0.54 protein_coding synonymous_variant LOW 255T>C Val85Val
M0118969 MPDJKIEM_00001 5260 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2313C>A None
M0118970 MPDJKIEM_00001 5262 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2315C>T None
M0118971 MPDJKIEM_00004 5319 3 Oral 0.23 protein_coding synonymous_variant LOW 1788T>C Arg596Arg
M0118972 MPDJKIEM_00004 5834 6 Oral 0.46 protein_coding missense_variant MODERATE 1273A>G Asn425Asp
M0118973 MPDJKIEM_00004 6331 4 Oral 0.31 protein_coding stop_gained HIGH 776C>A Ser259*
M0118974 MPDJKIEM_00004 6332 4 Oral 0.31 protein_coding missense_variant MODERATE 775T>G Ser259Ala
M0118975 MPDJKIEM_00004 6333 4 Oral 0.31 protein_coding synonymous_variant LOW 774C>T Arg258Arg
M0118976 MPDJKIEM_00004 6849 4 Oral 0.31 protein_coding synonymous_variant LOW 258C>T Asn86Asn
M0118977 MPDJKIEM_00004 7038 7 Oral 0.54 protein_coding synonymous_variant LOW 69A>G Val23Val
M0118978 MPDJKIEM_00005 7279 6 Oral 0.46 protein_coding synonymous_variant LOW 117A>G Leu39Leu
M0118979 MPDJKIEM_00005 7325 4 Oral 0.31 protein_coding missense_variant MODERATE 163A>C Asn55His
M0118980 MPDJKIEM_00005 7338 5 Oral 0.38 protein_coding missense_variant MODERATE 176C>T Ala59Val
M0118981 MPDJKIEM_00005 7357 4 Oral 0.31 protein_coding synonymous_variant LOW 195A>T Thr65Thr
M0118982 MPDJKIEM_00005 7375 4 Oral 0.31 protein_coding synonymous_variant LOW 213C>T Asp71Asp
M0118983 MPDJKIEM_00005 7384 4 Oral 0.31 protein_coding synonymous_variant LOW 222C>T Pro74Pro
M0118984 MPDJKIEM_00005 7387 5 Oral 0.38 protein_coding synonymous_variant LOW 225G>A Glu75Glu
M0118985 MPDJKIEM_00005 7477 6 Oral 0.46 protein_coding synonymous_variant LOW 315T>C Tyr105Tyr
M0118986 MPDJKIEM_00005 7513 6 Oral 0.46 protein_coding synonymous_variant LOW 351A>T Ala117Ala
M0118987 MPDJKIEM_00005 7531 6 Oral 0.46 protein_coding synonymous_variant LOW 369C>T Tyr123Tyr
M0118988 MPDJKIEM_00005 7540 3 Oral 0.23 protein_coding synonymous_variant LOW 378C>T Asn126Asn
M0118989 MPDJKIEM_00005 7546 4 Oral 0.31 protein_coding synonymous_variant LOW 384A>T Leu128Leu
M0118990 MPDJKIEM_00005 7666 6 Oral 0.46 protein_coding missense_variant MODERATE 504T>A Phe168Leu
M0118991 MPDJKIEM_00005 7792 6 Oral 0.46 protein_coding synonymous_variant LOW 630A>G Thr210Thr
M0118992 MPDJKIEM_00005 7807 4 Oral 0.31 protein_coding synonymous_variant LOW 645C>T Arg215Arg
M0118993 MPDJKIEM_00005 7828 5 Oral 0.38 protein_coding synonymous_variant LOW 666T>C Gly222Gly
M0118994 MPDJKIEM_00005 7966 4 Oral 0.31 protein_coding synonymous_variant LOW 804G>A Glu268Glu
M0118995 MPDJKIEM_00005 7970 5 Oral 0.38 protein_coding missense_variant MODERATE 808A>G Ile270Val
M0118996 MPDJKIEM_00005 7972 5 Oral 0.38 protein_coding missense_variant MODERATE 810A>G Ile270Met
M0118997 MPDJKIEM_00005 7990 5 Oral 0.38 protein_coding synonymous_variant LOW 828T>C Pro276Pro
M0118998 MPDJKIEM_00003 8507 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3267A>C None
M0118999 MPDJKIEM_00003 8521 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3281T>A None
M0119000 MPDJKIEM_00003 8529 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3289G>A None
M0119001 MPDJKIEM_00003 8544 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3304T>C None
M0119002 MPDJKIEM_00003 8558 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3318C>G None
M0119003 MPDJKIEM_00003 8560 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3320A>G None
M0119004 MPDJKIEM_00003 8682 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3442C>T None
M0119005 MPDJKIEM_00003 8846 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3606T>A None
M0119006 MPDJKIEM_00006 10110 6 Oral 0.46 protein_coding synonymous_variant LOW 66A>G Ala22Ala
M0119007 MPDJKIEM_00004 10241 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3135T>G None
M0119008 MPDJKIEM_00008 12519 3 Oral 0.23 protein_coding synonymous_variant LOW 705A>G Lys235Lys
M0119009 MPDJKIEM_00008 13608 3 Oral 0.23 protein_coding synonymous_variant LOW 1794C>A Thr598Thr
M0119010 MPDJKIEM_00008 13677 3 Oral 0.23 protein_coding synonymous_variant LOW 1863A>C Thr621Thr
M0119011 MPDJKIEM_00008 13875 3 Oral 0.23 protein_coding synonymous_variant LOW 2061C>T Ala687Ala
M0119012 MPDJKIEM_00006 14561 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -4386T>C None
M0119013 MPDJKIEM_00009 14692 5 Oral 0.38 protein_coding synonymous_variant LOW 21G>A Ser7Ser
M0119014 MPDJKIEM_00009 15847 4 Oral 0.31 protein_coding synonymous_variant LOW 1176C>T Gly392Gly
M0119015 MPDJKIEM_00007 16453 3 Oral 0.23 protein_coding downstream_gene_variant MODIFIER *4812C>T None
M0119016 MPDJKIEM_00007 11533 4 Oral 0.31 protein_coding synonymous_variant LOW 1200A>G Lys400Lys
M0119017 MPDJKIEM_00004 11683 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -4577T>A None
M0119018 MPDJKIEM_00002 112 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -2878T>C None
M0119019 MPDJKIEM_00002 1148 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1842C>G None
M0119020 MPDJKIEM_00002 1159 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1831A>G None
M0119021 MPDJKIEM_00002 1285 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1705A>G None
M0119022 MPDJKIEM_00002 1744 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1246G>A None
M0119023 MPDJKIEM_00001 2890 3 Oral 0.23 protein_coding missense_variant MODERATE 58G>C Val20Leu
M0119024 MPDJKIEM_00002 3152 4 Oral 0.31 protein_coding missense_variant MODERATE 163G>A Ala55Thr
M0119025 MPDJKIEM_00002 3156 4 Oral 0.31 protein_coding missense_variant MODERATE 167T>C Ile56Thr
M0119026 MPDJKIEM_00002 3163 3 Oral 0.23 protein_coding synonymous_variant LOW 174G>A Val58Val
M0119027 MPDJKIEM_00002 3166 3 Oral 0.23 protein_coding synonymous_variant LOW 177A>C Pro59Pro
M0119028 MPDJKIEM_00002 3168 3 Oral 0.23 protein_coding missense_variant MODERATE 179G>A Ser60Asn
M0119029 MPDJKIEM_00002 3709 3 Oral 0.23 protein_coding synonymous_variant LOW 720A>G Thr240Thr
M0119030 MPDJKIEM_00002 3710 4 Oral 0.31 protein_coding missense_variant MODERATE 721G>A Val241Ile
M0119031 MPDJKIEM_00002 4066 3 Oral 0.23 protein_coding synonymous_variant LOW 1077C>T Tyr359Tyr
M0119032 MPDJKIEM_00001 4746 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1799T>G None
M0119033 MPDJKIEM_00001 4754 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1807T>A None
M0119034 MPDJKIEM_00001 4755 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1808T>C None
M0119035 MPDJKIEM_00001 4756 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1809T>C None
M0119036 MPDJKIEM_00001 4757 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1810G>T None
M0119037 MPDJKIEM_00001 4763 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1816G>T None
M0119038 MPDJKIEM_00004 6252 4 Oral 0.31 protein_coding synonymous_variant LOW 855G>A Lys285Lys
M0119039 MPDJKIEM_00004 6447 4 Oral 0.31 protein_coding synonymous_variant LOW 660T>C Ile220Ile
M0119040 MPDJKIEM_00004 6501 3 Oral 0.23 protein_coding synonymous_variant LOW 606G>T Val202Val
M0119041 MPDJKIEM_00004 7017 4 Oral 0.31 protein_coding synonymous_variant LOW 90G>A Leu30Leu
M0119042 MPDJKIEM_00005 7257 3 Oral 0.23 protein_coding missense_variant MODERATE 95G>T Gly32Val
M0119043 MPDJKIEM_00005 7496 4 Oral 0.31 protein_coding missense_variant MODERATE 334T>C Ser112Pro
M0119044 MPDJKIEM_00003 8473 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3233T>C None
M0119045 MPDJKIEM_00003 8592 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3352C>T None
M0119046 MPDJKIEM_00003 8595 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -3355G>T None
M0119047 MPDJKIEM_00003 8689 5 Oral 0.38 protein_coding upstream_gene_variant MODIFIER -3449T>C None
M0119048 MPDJKIEM_00003 8724 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3484A>T None
M0119049 MPDJKIEM_00003 8727 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3487G>T None
M0119050 MPDJKIEM_00003 8728 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -3488T>G None
M0119051 MPDJKIEM_00006 9492 3 Oral 0.23 protein_coding synonymous_variant LOW 684G>A Val228Val
M0119052 MPDJKIEM_00006 9579 5 Oral 0.38 protein_coding synonymous_variant LOW 597A>G Gln199Gln
M0119053 MPDJKIEM_00008 12439 3 Oral 0.23 protein_coding missense_variant MODERATE 625A>G Ser209Gly
M0119054 MPDJKIEM_00008 12471 3 Oral 0.23 protein_coding synonymous_variant LOW 657T>A Val219Val
M0119055 MPDJKIEM_00008 13248 3 Oral 0.23 protein_coding synonymous_variant LOW 1434G>A Lys478Lys
M0119056 MPDJKIEM_00008 13905 3 Oral 0.23 protein_coding synonymous_variant LOW 2091T>G Val697Val
M0119057 MPDJKIEM_00009 15154 3 Oral 0.23 protein_coding synonymous_variant LOW 483C>T Ser161Ser
M0119058 MPDJKIEM_00009 15163 3 Oral 0.23 protein_coding synonymous_variant LOW 492T>C Phe164Phe
M0119059 MPDJKIEM_00006 9423 3 Oral 0.23 protein_coding synonymous_variant LOW 753T>A Ile251Ile
M0119060 MPDJKIEM_00006 9474 3 Oral 0.23 protein_coding synonymous_variant LOW 702T>C Arg234Arg
M0119061 MPDJKIEM_00002 1054 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1936C>G None
M0119062 MPDJKIEM_00002 2488 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -502G>T None
M0119063 MPDJKIEM_00002 2508 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -482T>C None
M0119064 MPDJKIEM_00002 2587 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -403T>A None
M0119065 MPDJKIEM_00002 3109 4 Oral 0.31 protein_coding synonymous_variant LOW 120T>A Thr40Thr
M0119066 MPDJKIEM_00001 4399 4 Oral 0.31 protein_coding upstream_gene_variant MODIFIER -1452G>C None
M0119067 MPDJKIEM_00004 5604 3 Oral 0.23 protein_coding synonymous_variant LOW 1503T>G Ala501Ala
M0119068 MPDJKIEM_00004 6750 4 Oral 0.31 protein_coding synonymous_variant LOW 357G>A Val119Val
M0119069 MPDJKIEM_00005 7285 4 Oral 0.31 protein_coding synonymous_variant LOW 123A>G Val41Val
M0119070 MPDJKIEM_00005 7438 4 Oral 0.31 protein_coding synonymous_variant LOW 276T>C Thr92Thr
M0119071 MPDJKIEM_00005 7825 3 Oral 0.23 protein_coding synonymous_variant LOW 663T>C Cys221Cys
M0119072 MPDJKIEM_00005 7977 3 Oral 0.23 protein_coding missense_variant MODERATE 815A>G Lys272Arg
M0119073 MPDJKIEM_00002 1433 3 Oral 0.23 protein_coding upstream_gene_variant MODIFIER -1557C>G None
M0119074 MPDJKIEM_00005 7925 3 Oral 0.23 protein_coding synonymous_variant LOW 763C>T Leu255Leu






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage
MPDJKIEM_00008 EFC71129.1|GH2 96.2 0 1 795 1 1
MPDJKIEM_00009 EFC71130.1|GH20 95.5 0 1 550 1 1





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term