Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2372
  Reference Plasmid   1111525849768046_bin.37__k141_125648
  Reference Plasmid Size   1615
  Reference Plasmid GC Content   0.32
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0119610 OFBBGPDJ_00001 27 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *1245A>G None
M0119611 OFBBGPDJ_00001 60 6 Oral 1.00 protein_coding downstream_gene_variant MODIFIER *1212A>C None
M0119612 OFBBGPDJ_00001 87 4 Oral 0.67 protein_coding downstream_gene_variant MODIFIER *1185C>A None
M0119613 OFBBGPDJ_00001 118 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *1154C>A None
M0119614 OFBBGPDJ_00001 132 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *1140G>T None
M0119615 OFBBGPDJ_00001 141 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *1131G>A None
M0119616 OFBBGPDJ_00001 186 6 Oral 1.00 protein_coding downstream_gene_variant MODIFIER *1086T>A None
M0119617 OFBBGPDJ_00001 222 6 Oral 1.00 protein_coding downstream_gene_variant MODIFIER *1050A>T None
M0119618 OFBBGPDJ_00001 390 6 Oral 1.00 protein_coding downstream_gene_variant MODIFIER *882C>T None
M0119619 OFBBGPDJ_00001 401 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *871G>T None
M0119620 OFBBGPDJ_00001 408 6 Oral 1.00 protein_coding downstream_gene_variant MODIFIER *864G>A None
M0119621 OFBBGPDJ_00001 485 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *787G>A None
M0119622 OFBBGPDJ_00001 527 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *745G>A None
M0119623 OFBBGPDJ_00001 528 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *744A>C None
M0119624 OFBBGPDJ_00001 574 4 Oral 0.67 protein_coding downstream_gene_variant MODIFIER *698G>A None
M0119625 OFBBGPDJ_00001 725 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *547T>C None
M0119626 OFBBGPDJ_00001 737 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *535G>A None
M0119627 OFBBGPDJ_00001 773 5 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *499T>C None
M0119628 OFBBGPDJ_00001 795 4 Oral 0.67 protein_coding downstream_gene_variant MODIFIER *477T>C None
M0119629 OFBBGPDJ_00001 357 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *915A>G None
M0119630 OFBBGPDJ_00001 372 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *900T>C None
M0119631 OFBBGPDJ_00001 375 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *897C>T None
M0119632 OFBBGPDJ_00001 376 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *896C>A None
M0119633 OFBBGPDJ_00001 1190 3 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *82T>C None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term