Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2373
  Reference Plasmid   1111525849768046_bin.37__k141_126179
  Reference Plasmid Size   8641
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0119634 HPCNHPDF_00007 6793 3 Oral 0.20 protein_coding synonymous_variant LOW 24T>C Tyr8Tyr
M0119635 HPCNHPDF_00007 6973 3 Oral 0.20 protein_coding synonymous_variant LOW 204A>T Gly68Gly
M0119636 HPCNHPDF_00007 7090 4 Oral 0.27 protein_coding synonymous_variant LOW 321T>A Ala107Ala
M0119637 HPCNHPDF_00007 7273 5 Oral 0.33 protein_coding synonymous_variant LOW 504T>C Asp168Asp
M0119638 HPCNHPDF_00007 7363 4 Oral 0.27 protein_coding synonymous_variant LOW 594T>C Gly198Gly
M0119639 HPCNHPDF_00007 7395 3 Oral 0.20 protein_coding missense_variant MODERATE 626A>G Gln209Arg
M0119640 HPCNHPDF_00007 7414 3 Oral 0.20 protein_coding synonymous_variant LOW 645G>A Glu215Glu
M0119641 HPCNHPDF_00007 7498 3 Oral 0.20 protein_coding synonymous_variant LOW 729G>T Ser243Ser
M0119642 HPCNHPDF_00007 7756 4 Oral 0.27 protein_coding synonymous_variant LOW 987G>A Glu329Glu
M0119643 HPCNHPDF_00007 7762 3 Oral 0.20 protein_coding synonymous_variant LOW 993T>C Asn331Asn
M0119644 HPCNHPDF_00007 7771 4 Oral 0.27 protein_coding synonymous_variant LOW 1002T>A Pro334Pro
M0119645 HPCNHPDF_00007 7792 4 Oral 0.27 protein_coding synonymous_variant LOW 1023T>C Cys341Cys
M0119646 HPCNHPDF_00007 7795 3 Oral 0.20 protein_coding synonymous_variant LOW 1026T>A Ala342Ala
M0119647 HPCNHPDF_00007 7864 4 Oral 0.27 protein_coding synonymous_variant LOW 1095T>A Val365Val
M0119648 HPCNHPDF_00007 7879 3 Oral 0.20 protein_coding synonymous_variant LOW 1110A>G Val370Val
M0119649 HPCNHPDF_00008 8105 5 Oral 0.33 protein_coding synonymous_variant LOW 42G>A Gly14Gly
M0119650 HPCNHPDF_00008 8288 6 Oral 0.40 protein_coding synonymous_variant LOW 225T>A Thr75Thr
M0119651 HPCNHPDF_00008 8294 6 Oral 0.40 protein_coding synonymous_variant LOW 231T>C Phe77Phe
M0119652 HPCNHPDF_00008 8393 4 Oral 0.27 protein_coding synonymous_variant LOW 330A>T Leu110Leu
M0119653 HPCNHPDF_00008 8417 3 Oral 0.20 protein_coding synonymous_variant LOW 354A>T Val118Val
M0119654 HPCNHPDF_00008 8433 6 Oral 0.40 protein_coding missense_variant MODERATE 370T>C Cys124Arg
M0119655 HPCNHPDF_00004 8588 4 Oral 0.27 protein_coding downstream_gene_variant MODIFIER *2590C>T None
M0119656 HPCNHPDF_00003 156 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1934G>C None
M0119657 HPCNHPDF_00003 157 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1933G>A None
M0119658 HPCNHPDF_00003 160 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -1930G>T None
M0119659 HPCNHPDF_00003 177 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -1913G>A None
M0119660 HPCNHPDF_00001 248 6 Oral 0.40 protein_coding synonymous_variant LOW 816A>G Glu272Glu
M0119661 HPCNHPDF_00001 266 6 Oral 0.40 protein_coding synonymous_variant LOW 798T>C Ile266Ile
M0119662 HPCNHPDF_00001 530 3 Oral 0.20 protein_coding synonymous_variant LOW 534G>A Glu178Glu
M0119663 HPCNHPDF_00001 608 7 Oral 0.47 protein_coding synonymous_variant LOW 456A>G Lys152Lys
M0119664 HPCNHPDF_00001 680 7 Oral 0.47 protein_coding synonymous_variant LOW 384T>A Ile128Ile
M0119665 HPCNHPDF_00002 1170 8 Oral 0.53 protein_coding synonymous_variant LOW 684T>C Ser228Ser
M0119666 HPCNHPDF_00002 1233 5 Oral 0.33 protein_coding synonymous_variant LOW 621T>C His207His
M0119667 HPCNHPDF_00002 1257 8 Oral 0.53 protein_coding synonymous_variant LOW 597T>C Asp199Asp
M0119668 HPCNHPDF_00002 1263 8 Oral 0.53 protein_coding synonymous_variant LOW 591A>C Gly197Gly
M0119669 HPCNHPDF_00002 1317 8 Oral 0.53 protein_coding synonymous_variant LOW 537A>G Val179Val
M0119670 HPCNHPDF_00002 1364 8 Oral 0.53 protein_coding missense_variant MODERATE 490A>G Thr164Ala
M0119671 HPCNHPDF_00002 1461 5 Oral 0.33 protein_coding synonymous_variant LOW 393T>C Ile131Ile
M0119672 HPCNHPDF_00002 1463 8 Oral 0.53 protein_coding missense_variant MODERATE 391A>G Ile131Val
M0119673 HPCNHPDF_00002 1614 8 Oral 0.53 protein_coding synonymous_variant LOW 240T>C Leu80Leu
M0119674 HPCNHPDF_00002 1662 5 Oral 0.33 protein_coding synonymous_variant LOW 192T>C His64His
M0119675 HPCNHPDF_00002 1680 7 Oral 0.47 protein_coding synonymous_variant LOW 174C>T Cys58Cys
M0119676 HPCNHPDF_00002 1712 8 Oral 0.53 protein_coding missense_variant MODERATE 142A>G Lys48Glu
M0119677 HPCNHPDF_00002 1836 7 Oral 0.47 protein_coding synonymous_variant LOW 18A>G Val6Val
M0119678 HPCNHPDF_00001 1871 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -808A>T None
M0119679 HPCNHPDF_00001 1917 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -854G>A None
M0119680 HPCNHPDF_00001 1918 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -855T>C None
M0119681 HPCNHPDF_00001 1937 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -874C>T None
M0119682 HPCNHPDF_00001 1951 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -888C>T None
M0119683 HPCNHPDF_00001 1953 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -890T>A None
M0119684 HPCNHPDF_00001 1958 8 Oral 0.53 protein_coding upstream_gene_variant MODIFIER -895A>G None
M0119685 HPCNHPDF_00001 1970 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -907T>C None
M0119686 HPCNHPDF_00001 1979 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -916G>A None
M0119687 HPCNHPDF_00001 1986 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -923C>T None
M0119688 HPCNHPDF_00001 2016 7 Oral 0.47 protein_coding upstream_gene_variant MODIFIER -953T>C None
M0119689 HPCNHPDF_00001 2073 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -1010C>T None
M0119690 HPCNHPDF_00003 2258 3 Oral 0.20 protein_coding missense_variant MODERATE 169G>A Asp57Asn
M0119691 HPCNHPDF_00003 2263 7 Oral 0.47 protein_coding synonymous_variant LOW 174T>C Phe58Phe
M0119692 HPCNHPDF_00003 2314 3 Oral 0.20 protein_coding synonymous_variant LOW 225C>T Asn75Asn
M0119693 HPCNHPDF_00003 2325 7 Oral 0.47 protein_coding missense_variant MODERATE 236T>A Phe79Tyr
M0119694 HPCNHPDF_00003 2359 7 Oral 0.47 protein_coding synonymous_variant LOW 270C>T Asp90Asp
M0119695 HPCNHPDF_00003 2399 8 Oral 0.53 protein_coding synonymous_variant LOW 310T>C Leu104Leu
M0119696 HPCNHPDF_00003 2443 8 Oral 0.53 protein_coding synonymous_variant LOW 354T>C Asn118Asn
M0119697 HPCNHPDF_00003 2446 8 Oral 0.53 protein_coding synonymous_variant LOW 357T>C Thr119Thr
M0119698 HPCNHPDF_00003 2455 6 Oral 0.40 protein_coding synonymous_variant LOW 366T>C Pro122Pro
M0119699 HPCNHPDF_00003 2659 6 Oral 0.40 protein_coding synonymous_variant LOW 570G>A Gly190Gly
M0119700 HPCNHPDF_00003 2692 4 Oral 0.27 protein_coding synonymous_variant LOW 603C>T Ser201Ser
M0119701 HPCNHPDF_00003 2710 4 Oral 0.27 protein_coding synonymous_variant LOW 621T>C Ser207Ser
M0119702 HPCNHPDF_00003 2752 4 Oral 0.27 protein_coding synonymous_variant LOW 663C>T Gly221Gly
M0119703 HPCNHPDF_00003 2765 4 Oral 0.27 protein_coding missense_variant MODERATE 676G>A Val226Ile
M0119704 HPCNHPDF_00003 2827 6 Oral 0.40 protein_coding synonymous_variant LOW 738C>A Leu246Leu
M0119705 HPCNHPDF_00003 2869 3 Oral 0.20 protein_coding synonymous_variant LOW 780C>T Phe260Phe
M0119706 HPCNHPDF_00003 2944 3 Oral 0.20 protein_coding synonymous_variant LOW 855A>G Glu285Glu
M0119707 HPCNHPDF_00003 2954 3 Oral 0.20 protein_coding missense_variant MODERATE 865T>G Ser289Ala
M0119708 HPCNHPDF_00003 2962 6 Oral 0.40 protein_coding missense_variant MODERATE 873T>A Asp291Glu
M0119709 HPCNHPDF_00003 2992 8 Oral 0.53 protein_coding synonymous_variant LOW 903T>C Gly301Gly
M0119710 HPCNHPDF_00003 3053 8 Oral 0.53 protein_coding missense_variant MODERATE 964T>C Tyr322His
M0119711 HPCNHPDF_00003 3091 7 Oral 0.47 protein_coding synonymous_variant LOW 1002A>C Pro334Pro
M0119712 HPCNHPDF_00003 3127 4 Oral 0.27 protein_coding synonymous_variant LOW 1038C>T Thr346Thr
M0119713 HPCNHPDF_00003 3130 4 Oral 0.27 protein_coding synonymous_variant LOW 1041T>C Asn347Asn
M0119714 HPCNHPDF_00003 3148 8 Oral 0.53 protein_coding synonymous_variant LOW 1059A>C Ile353Ile
M0119715 HPCNHPDF_00003 3156 8 Oral 0.53 protein_coding missense_variant MODERATE 1067A>C Asn356Thr
M0119716 HPCNHPDF_00003 3161 3 Oral 0.20 protein_coding missense_variant MODERATE 1072G>A Val358Ile
M0119717 HPCNHPDF_00003 3166 5 Oral 0.33 protein_coding synonymous_variant LOW 1077A>G Ala359Ala
M0119718 HPCNHPDF_00003 3175 4 Oral 0.27 protein_coding synonymous_variant LOW 1086A>T Val362Val
M0119719 HPCNHPDF_00003 3178 3 Oral 0.20 protein_coding synonymous_variant LOW 1089T>C Ala363Ala
M0119720 HPCNHPDF_00003 3184 8 Oral 0.53 protein_coding synonymous_variant LOW 1095G>T Gly365Gly
M0119721 HPCNHPDF_00003 3212 8 Oral 0.53 protein_coding missense_variant MODERATE 1123A>G Ile375Val
M0119722 HPCNHPDF_00003 3286 8 Oral 0.53 protein_coding synonymous_variant LOW 1197G>A Val399Val
M0119723 HPCNHPDF_00003 3301 6 Oral 0.40 protein_coding synonymous_variant LOW 1212C>T Leu404Leu
M0119724 HPCNHPDF_00003 3316 6 Oral 0.40 protein_coding synonymous_variant LOW 1227T>C Phe409Phe
M0119725 HPCNHPDF_00003 3365 3 Oral 0.20 protein_coding synonymous_variant LOW 1276C>T Leu426Leu
M0119726 HPCNHPDF_00003 3382 6 Oral 0.40 protein_coding synonymous_variant LOW 1293A>G Val431Val
M0119727 HPCNHPDF_00003 3449 3 Oral 0.20 protein_coding missense_variant MODERATE 1360A>G Lys454Glu
M0119728 HPCNHPDF_00001 3461 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -2398A>G None
M0119729 HPCNHPDF_00004 3640 4 Oral 0.27 protein_coding synonymous_variant LOW 81G>A Gln27Gln
M0119730 HPCNHPDF_00004 3670 4 Oral 0.27 protein_coding synonymous_variant LOW 111C>T Ser37Ser
M0119731 HPCNHPDF_00004 3672 3 Oral 0.20 protein_coding missense_variant MODERATE 113A>G Asn38Ser
M0119732 HPCNHPDF_00004 3691 5 Oral 0.33 protein_coding missense_variant MODERATE 132A>T Lys44Asn
M0119733 HPCNHPDF_00004 4393 3 Oral 0.20 protein_coding synonymous_variant LOW 834A>G Glu278Glu
M0119734 HPCNHPDF_00004 4525 4 Oral 0.27 protein_coding synonymous_variant LOW 966T>C Asn322Asn
M0119735 HPCNHPDF_00004 4613 5 Oral 0.33 protein_coding missense_variant MODERATE 1054G>A Val352Ile
M0119736 HPCNHPDF_00004 4672 4 Oral 0.27 protein_coding missense_variant MODERATE 1113G>T Leu371Phe
M0119737 HPCNHPDF_00004 5505 3 Oral 0.20 protein_coding missense_variant MODERATE 1946C>A Ala649Asp
M0119738 HPCNHPDF_00004 5735 3 Oral 0.20 protein_coding missense_variant MODERATE 2176G>A Glu726Lys
M0119739 HPCNHPDF_00004 5866 3 Oral 0.20 protein_coding synonymous_variant LOW 2307A>T Ile769Ile
M0119740 HPCNHPDF_00004 5894 3 Oral 0.20 protein_coding missense_variant MODERATE 2335T>C Ser779Pro
M0119741 HPCNHPDF_00004 5953 3 Oral 0.20 protein_coding synonymous_variant LOW 2394C>T Pro798Pro
M0119742 HPCNHPDF_00004 5959 3 Oral 0.20 protein_coding synonymous_variant LOW 2400T>C Gly800Gly
M0119743 HPCNHPDF_00004 5960 3 Oral 0.20 protein_coding missense_variant MODERATE 2401G>A Val801Ile
M0119744 HPCNHPDF_00004 5992 3 Oral 0.20 protein_coding synonymous_variant LOW 2433A>G Lys811Lys
M0119745 HPCNHPDF_00005 6079 3 Oral 0.20 protein_coding missense_variant MODERATE 25A>G Asn9Asp
M0119746 HPCNHPDF_00006 6396 5 Oral 0.33 protein_coding missense_variant MODERATE 29G>A Ser10Asn
M0119747 HPCNHPDF_00006 6436 3 Oral 0.20 protein_coding synonymous_variant LOW 69T>C Ile23Ile
M0119748 HPCNHPDF_00006 6527 4 Oral 0.27 protein_coding missense_variant MODERATE 160T>C Phe54Leu
M0119749 HPCNHPDF_00006 6538 3 Oral 0.20 protein_coding synonymous_variant LOW 171G>T Leu57Leu
M0119750 HPCNHPDF_00002 6632 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4779T>A None
M0119751 HPCNHPDF_00002 6641 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4788T>A None
M0119752 HPCNHPDF_00002 6643 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4790A>T None
M0119753 HPCNHPDF_00002 6645 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4792T>C None
M0119754 HPCNHPDF_00002 6667 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -4814T>G None
M0119755 HPCNHPDF_00002 6690 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -4837T>A None
M0119756 HPCNHPDF_00007 6922 3 Oral 0.20 protein_coding synonymous_variant LOW 153A>G Arg51Arg
M0119757 HPCNHPDF_00007 6955 3 Oral 0.20 protein_coding synonymous_variant LOW 186T>C Asp62Asp
M0119758 HPCNHPDF_00004 4312 3 Oral 0.20 protein_coding synonymous_variant LOW 753T>C Arg251Arg
M0119759 HPCNHPDF_00004 4405 3 Oral 0.20 protein_coding synonymous_variant LOW 846A>G Gly282Gly
M0119760 HPCNHPDF_00004 4948 3 Oral 0.20 protein_coding synonymous_variant LOW 1389T>A Ser463Ser
M0119761 HPCNHPDF_00004 5935 3 Oral 0.20 protein_coding synonymous_variant LOW 2376G>A Gln792Gln
M0119762 HPCNHPDF_00004 5965 3 Oral 0.20 protein_coding synonymous_variant LOW 2406C>T Tyr802Tyr
M0119763 HPCNHPDF_00007 7641 3 Oral 0.20 protein_coding missense_variant MODERATE 872C>A Ala291Glu
M0119764 HPCNHPDF_00007 7867 3 Oral 0.20 protein_coding synonymous_variant LOW 1098A>G Arg366Arg
M0119765 HPCNHPDF_00007 7876 3 Oral 0.20 protein_coding synonymous_variant LOW 1107A>G Val369Val
M0119766 HPCNHPDF_00008 8228 4 Oral 0.27 protein_coding synonymous_variant LOW 165T>C Thr55Thr
M0119767 HPCNHPDF_00002 1128 6 Oral 0.40 protein_coding missense_variant MODERATE 726G>T Lys242Asn
M0119768 HPCNHPDF_00002 1242 3 Oral 0.20 protein_coding synonymous_variant LOW 612C>A Gly204Gly
M0119769 HPCNHPDF_00002 1299 4 Oral 0.27 protein_coding synonymous_variant LOW 555G>A Ala185Ala
M0119770 HPCNHPDF_00002 1320 6 Oral 0.40 protein_coding synonymous_variant LOW 534A>G Lys178Lys
M0119771 HPCNHPDF_00002 1347 3 Oral 0.20 protein_coding synonymous_variant LOW 507C>T Asn169Asn
M0119772 HPCNHPDF_00002 1359 6 Oral 0.40 protein_coding synonymous_variant LOW 495T>C Cys165Cys
M0119773 HPCNHPDF_00002 1563 4 Oral 0.27 protein_coding synonymous_variant LOW 291G>A Ala97Ala
M0119774 HPCNHPDF_00001 1887 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -824A>G None
M0119775 HPCNHPDF_00001 1905 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -842A>T None
M0119776 HPCNHPDF_00001 1948 6 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -885C>A None
M0119777 HPCNHPDF_00001 1954 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -891G>A None
M0119778 HPCNHPDF_00003 2267 3 Oral 0.20 protein_coding missense_variant MODERATE 178A>G Thr60Ala
M0119779 HPCNHPDF_00003 2290 3 Oral 0.20 protein_coding synonymous_variant LOW 201G>A Glu67Glu
M0119780 HPCNHPDF_00003 2296 5 Oral 0.33 protein_coding synonymous_variant LOW 207G>A Glu69Glu
M0119781 HPCNHPDF_00003 2308 3 Oral 0.20 protein_coding synonymous_variant LOW 219C>T Ile73Ile
M0119782 HPCNHPDF_00003 2435 5 Oral 0.33 protein_coding missense_variant MODERATE 346A>G Ile116Val
M0119783 HPCNHPDF_00003 2548 6 Oral 0.40 protein_coding synonymous_variant LOW 459A>G Pro153Pro
M0119784 HPCNHPDF_00003 2596 3 Oral 0.20 protein_coding synonymous_variant LOW 507C>A Gly169Gly
M0119785 HPCNHPDF_00003 3063 5 Oral 0.33 protein_coding missense_variant MODERATE 974T>C Val325Ala
M0119786 HPCNHPDF_00003 3074 7 Oral 0.47 protein_coding missense_variant MODERATE 985G>A Ala329Thr
M0119787 HPCNHPDF_00003 3193 4 Oral 0.27 protein_coding synonymous_variant LOW 1104A>T Ile368Ile
M0119788 HPCNHPDF_00004 3835 3 Oral 0.20 protein_coding synonymous_variant LOW 276C>T Asp92Asp
M0119789 HPCNHPDF_00003 36 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2054T>A None
M0119790 HPCNHPDF_00003 39 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2051T>G None
M0119791 HPCNHPDF_00003 42 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2048T>A None
M0119792 HPCNHPDF_00003 45 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -2045T>A None
M0119793 HPCNHPDF_00003 48 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2042A>T None
M0119794 HPCNHPDF_00003 67 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2023A>G None
M0119795 HPCNHPDF_00003 69 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2021A>T None
M0119796 HPCNHPDF_00003 72 5 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -2018A>G None
M0119797 HPCNHPDF_00001 464 3 Oral 0.20 protein_coding synonymous_variant LOW 600G>A Leu200Leu
M0119798 HPCNHPDF_00001 1950 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -887A>T None
M0119799 HPCNHPDF_00003 2123 3 Oral 0.20 protein_coding missense_variant MODERATE 34T>C Phe12Leu
M0119800 HPCNHPDF_00003 2138 3 Oral 0.20 protein_coding missense_variant MODERATE 49G>A Val17Ile
M0119801 HPCNHPDF_00003 2374 4 Oral 0.27 protein_coding synonymous_variant LOW 285A>T Val95Val
M0119802 HPCNHPDF_00003 2422 4 Oral 0.27 protein_coding synonymous_variant LOW 333C>A Gly111Gly
M0119803 HPCNHPDF_00003 2464 3 Oral 0.20 protein_coding synonymous_variant LOW 375C>T Ala125Ala
M0119804 HPCNHPDF_00003 3055 3 Oral 0.20 protein_coding synonymous_variant LOW 966C>T Tyr322Tyr
M0119805 HPCNHPDF_00003 3057 3 Oral 0.20 protein_coding missense_variant MODERATE 968C>G Thr323Ser
M0119806 HPCNHPDF_00004 4090 3 Oral 0.20 protein_coding synonymous_variant LOW 531C>T Pro177Pro
M0119807 HPCNHPDF_00004 4126 3 Oral 0.20 protein_coding synonymous_variant LOW 567G>A Gly189Gly
M0119808 HPCNHPDF_00004 4132 3 Oral 0.20 protein_coding synonymous_variant LOW 573G>A Glu191Glu
M0119809 HPCNHPDF_00004 4135 3 Oral 0.20 protein_coding synonymous_variant LOW 576C>A Ala192Ala
M0119810 HPCNHPDF_00002 6304 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4451A>G None
M0119811 HPCNHPDF_00002 6315 4 Oral 0.27 protein_coding upstream_gene_variant MODIFIER -4462C>G None
M0119812 HPCNHPDF_00004 8611 3 Oral 0.20 protein_coding downstream_gene_variant MODIFIER *2613C>A None
M0119813 HPCNHPDF_00004 4174 3 Oral 0.20 protein_coding synonymous_variant LOW 615T>C Asp205Asp
M0119814 HPCNHPDF_00002 6201 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4348A>C None
M0119815 HPCNHPDF_00002 6212 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4359A>G None
M0119816 HPCNHPDF_00002 6213 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4360C>A None
M0119817 HPCNHPDF_00002 6255 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -4402T>A None
M0119818 HPCNHPDF_00002 1370 3 Oral 0.20 protein_coding missense_variant MODERATE 484G>A Asp162Asn
M0119819 HPCNHPDF_00001 1981 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -918G>A None
M0119820 HPCNHPDF_00001 1991 3 Oral 0.20 protein_coding upstream_gene_variant MODIFIER -928C>T None
M0119821 HPCNHPDF_00002 1446 3 Oral 0.20 protein_coding synonymous_variant LOW 408C>T Gly136Gly
M0119822 HPCNHPDF_00002 1451 3 Oral 0.20 protein_coding missense_variant MODERATE 403G>A Ala135Thr
M0119823 HPCNHPDF_00002 1473 3 Oral 0.20 protein_coding synonymous_variant LOW 381C>T Gly127Gly






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term