Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2378
  Reference Plasmid   1111525849768046_bin.37__k141_139312
  Reference Plasmid Size   8262
  Reference Plasmid GC Content   0.36
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0120133 KCKFLOBI_00004 2122 4 Oral 0.33 protein_coding synonymous_variant LOW 1536T>A Val512Val
M0120134 KCKFLOBI_00004 2455 3 Oral 0.25 protein_coding synonymous_variant LOW 1203C>T Pro401Pro
M0120135 KCKFLOBI_00004 2548 3 Oral 0.25 protein_coding synonymous_variant LOW 1110T>A Gly370Gly
M0120136 KCKFLOBI_00004 2556 3 Oral 0.25 protein_coding missense_variant MODERATE 1102A>G Ile368Val
M0120137 KCKFLOBI_00004 2575 3 Oral 0.25 protein_coding synonymous_variant LOW 1083C>T Arg361Arg
M0120138 KCKFLOBI_00004 2590 3 Oral 0.25 protein_coding synonymous_variant LOW 1068T>C Tyr356Tyr
M0120139 KCKFLOBI_00004 2599 3 Oral 0.25 protein_coding synonymous_variant LOW 1059A>T Ala353Ala
M0120140 KCKFLOBI_00004 2602 3 Oral 0.25 protein_coding synonymous_variant LOW 1056T>A Thr352Thr
M0120141 KCKFLOBI_00004 2611 3 Oral 0.25 protein_coding synonymous_variant LOW 1047A>T Thr349Thr
M0120142 KCKFLOBI_00004 2632 3 Oral 0.25 protein_coding synonymous_variant LOW 1026C>T Phe342Phe
M0120143 KCKFLOBI_00004 2759 4 Oral 0.33 protein_coding missense_variant MODERATE 899T>C Val300Ala
M0120144 KCKFLOBI_00004 2866 4 Oral 0.33 protein_coding synonymous_variant LOW 792T>C Asn264Asn
M0120145 KCKFLOBI_00004 2965 3 Oral 0.25 protein_coding synonymous_variant LOW 693T>C Asp231Asp
M0120146 KCKFLOBI_00004 2974 3 Oral 0.25 protein_coding synonymous_variant LOW 684T>A Thr228Thr
M0120147 KCKFLOBI_00004 3094 4 Oral 0.33 protein_coding synonymous_variant LOW 564C>T Asp188Asp
M0120148 KCKFLOBI_00004 3124 4 Oral 0.33 protein_coding synonymous_variant LOW 534T>C Gly178Gly
M0120149 KCKFLOBI_00004 3139 4 Oral 0.33 protein_coding synonymous_variant LOW 519G>A Gly173Gly
M0120150 KCKFLOBI_00004 3142 4 Oral 0.33 protein_coding synonymous_variant LOW 516G>A Lys172Lys
M0120151 KCKFLOBI_00004 3154 4 Oral 0.33 protein_coding synonymous_variant LOW 504A>G Glu168Glu
M0120152 KCKFLOBI_00004 3193 4 Oral 0.33 protein_coding synonymous_variant LOW 465T>C Thr155Thr
M0120153 KCKFLOBI_00004 3298 4 Oral 0.33 protein_coding synonymous_variant LOW 360T>C Gly120Gly
M0120154 KCKFLOBI_00004 3556 5 Oral 0.42 protein_coding synonymous_variant LOW 102T>C Gly34Gly
M0120155 KCKFLOBI_00004 3133 3 Oral 0.25 protein_coding synonymous_variant LOW 525C>T Gly175Gly
M0120156 KCKFLOBI_00004 3172 3 Oral 0.25 protein_coding synonymous_variant LOW 486C>T Asn162Asn
M0120157 KCKFLOBI_00004 3226 3 Oral 0.25 protein_coding synonymous_variant LOW 432A>G Ala144Ala
M0120158 KCKFLOBI_00004 3418 3 Oral 0.25 protein_coding synonymous_variant LOW 240C>T Pro80Pro
M0120159 KCKFLOBI_00004 3502 3 Oral 0.25 protein_coding synonymous_variant LOW 156C>T Cys52Cys
M0120160 KCKFLOBI_00004 3532 3 Oral 0.25 protein_coding synonymous_variant LOW 126C>T Ala42Ala
M0120161 KCKFLOBI_00004 3535 3 Oral 0.25 protein_coding synonymous_variant LOW 123T>C Asn41Asn
M0120162 KCKFLOBI_00005 3967 3 Oral 0.25 protein_coding synonymous_variant LOW 753G>A Arg251Arg
M0120163 KCKFLOBI_00005 4060 4 Oral 0.33 protein_coding synonymous_variant LOW 660T>C Ser220Ser
M0120164 KCKFLOBI_00005 4061 4 Oral 0.33 protein_coding missense_variant MODERATE 659C>A Ser220Tyr
M0120165 KCKFLOBI_00005 4062 4 Oral 0.33 protein_coding missense_variant MODERATE 658T>C Ser220Pro
M0120166 KCKFLOBI_00005 4068 4 Oral 0.33 protein_coding missense_variant MODERATE 652A>T Asn218Tyr
M0120167 KCKFLOBI_00005 4102 3 Oral 0.25 protein_coding synonymous_variant LOW 618A>G Ser206Ser
M0120168 KCKFLOBI_00005 4111 4 Oral 0.33 protein_coding synonymous_variant LOW 609A>T Arg203Arg
M0120169 KCKFLOBI_00005 4116 3 Oral 0.25 protein_coding missense_variant MODERATE 604G>A Val202Ile
M0120170 KCKFLOBI_00005 4117 4 Oral 0.33 protein_coding synonymous_variant LOW 603A>T Thr201Thr
M0120171 KCKFLOBI_00005 4165 5 Oral 0.42 protein_coding synonymous_variant LOW 555A>T Val185Val
M0120172 KCKFLOBI_00005 4221 4 Oral 0.33 protein_coding synonymous_variant LOW 499C>T Leu167Leu
M0120173 KCKFLOBI_00005 4228 3 Oral 0.25 protein_coding synonymous_variant LOW 492C>A Gly164Gly
M0120174 KCKFLOBI_00005 4237 4 Oral 0.33 protein_coding synonymous_variant LOW 483C>T Tyr161Tyr
M0120175 KCKFLOBI_00005 4267 5 Oral 0.42 protein_coding synonymous_variant LOW 453C>T Tyr151Tyr
M0120176 KCKFLOBI_00005 4321 3 Oral 0.25 protein_coding synonymous_variant LOW 399A>G Val133Val
M0120177 KCKFLOBI_00005 4354 3 Oral 0.25 protein_coding synonymous_variant LOW 366C>A Ala122Ala
M0120178 KCKFLOBI_00005 4360 4 Oral 0.33 protein_coding synonymous_variant LOW 360T>C Asn120Asn
M0120179 KCKFLOBI_00005 4363 4 Oral 0.33 protein_coding synonymous_variant LOW 357C>T Ala119Ala
M0120180 KCKFLOBI_00005 4378 4 Oral 0.33 protein_coding synonymous_variant LOW 342G>A Ala114Ala
M0120181 KCKFLOBI_00005 4384 4 Oral 0.33 protein_coding synonymous_variant LOW 336T>C Gly112Gly
M0120182 KCKFLOBI_00005 4405 5 Oral 0.42 protein_coding synonymous_variant LOW 315G>T Ser105Ser
M0120183 KCKFLOBI_00005 4414 4 Oral 0.33 protein_coding missense_variant MODERATE 306T>A Asp102Glu
M0120184 KCKFLOBI_00005 4417 4 Oral 0.33 protein_coding synonymous_variant LOW 303T>A Ser101Ser
M0120185 KCKFLOBI_00005 4420 4 Oral 0.33 protein_coding synonymous_variant LOW 300C>T Ile100Ile
M0120186 KCKFLOBI_00005 4422 4 Oral 0.33 protein_coding missense_variant MODERATE 298A>C Ile100Leu
M0120187 KCKFLOBI_00005 4423 4 Oral 0.33 protein_coding synonymous_variant LOW 297T>C His99His
M0120188 KCKFLOBI_00005 4462 4 Oral 0.33 protein_coding synonymous_variant LOW 258C>T Tyr86Tyr
M0120189 KCKFLOBI_00005 4489 4 Oral 0.33 protein_coding synonymous_variant LOW 231T>C Ala77Ala
M0120190 KCKFLOBI_00005 4492 4 Oral 0.33 protein_coding synonymous_variant LOW 228A>T Ser76Ser
M0120191 KCKFLOBI_00005 4498 4 Oral 0.33 protein_coding synonymous_variant LOW 222T>C Val74Val
M0120192 KCKFLOBI_00005 4501 4 Oral 0.33 protein_coding synonymous_variant LOW 219T>C Asn73Asn
M0120193 KCKFLOBI_00005 4564 5 Oral 0.42 protein_coding synonymous_variant LOW 156A>G Thr52Thr
M0120194 KCKFLOBI_00005 4567 4 Oral 0.33 protein_coding synonymous_variant LOW 153C>T Ile51Ile
M0120195 KCKFLOBI_00005 4585 4 Oral 0.33 protein_coding synonymous_variant LOW 135C>T Tyr45Tyr
M0120196 KCKFLOBI_00006 4771 3 Oral 0.25 protein_coding missense_variant MODERATE 655G>A Glu219Lys
M0120197 KCKFLOBI_00006 4780 4 Oral 0.33 protein_coding missense_variant MODERATE 646A>G Lys216Glu
M0120198 KCKFLOBI_00006 4784 3 Oral 0.25 protein_coding synonymous_variant LOW 642A>G Ser214Ser
M0120199 KCKFLOBI_00006 4841 3 Oral 0.25 protein_coding synonymous_variant LOW 585C>T Ile195Ile
M0120200 KCKFLOBI_00006 4849 3 Oral 0.25 protein_coding synonymous_variant LOW 577C>T Leu193Leu
M0120201 KCKFLOBI_00006 4853 3 Oral 0.25 protein_coding synonymous_variant LOW 573A>T Val191Val
M0120202 KCKFLOBI_00006 4940 3 Oral 0.25 protein_coding synonymous_variant LOW 486A>C Pro162Pro
M0120203 KCKFLOBI_00006 5009 5 Oral 0.42 protein_coding synonymous_variant LOW 417A>T Gly139Gly
M0120204 KCKFLOBI_00006 5012 5 Oral 0.42 protein_coding synonymous_variant LOW 414T>A Thr138Thr
M0120205 KCKFLOBI_00006 5024 6 Oral 0.50 protein_coding synonymous_variant LOW 402C>T Val134Val
M0120206 KCKFLOBI_00006 5146 3 Oral 0.25 protein_coding missense_variant MODERATE 280C>T Arg94Cys
M0120207 KCKFLOBI_00006 5191 4 Oral 0.33 protein_coding missense_variant MODERATE 235G>A Ala79Thr
M0120208 KCKFLOBI_00006 5195 3 Oral 0.25 protein_coding synonymous_variant LOW 231T>C Ala77Ala
M0120209 KCKFLOBI_00006 5234 6 Oral 0.50 protein_coding synonymous_variant LOW 192T>C Phe64Phe
M0120210 KCKFLOBI_00006 5258 6 Oral 0.50 protein_coding synonymous_variant LOW 168T>C Asn56Asn
M0120211 KCKFLOBI_00007 5564 5 Oral 0.42 protein_coding synonymous_variant LOW 258C>T Val86Val
M0120212 KCKFLOBI_00007 5573 3 Oral 0.25 protein_coding synonymous_variant LOW 249A>T Ala83Ala
M0120213 KCKFLOBI_00007 5576 6 Oral 0.50 protein_coding synonymous_variant LOW 246A>G Glu82Glu
M0120214 KCKFLOBI_00007 5588 6 Oral 0.50 protein_coding synonymous_variant LOW 234C>T Ile78Ile
M0120215 KCKFLOBI_00007 5609 5 Oral 0.42 protein_coding synonymous_variant LOW 213A>G Ala71Ala
M0120216 KCKFLOBI_00007 5756 6 Oral 0.50 protein_coding synonymous_variant LOW 66A>G Lys22Lys
M0120217 KCKFLOBI_00007 5773 5 Oral 0.42 protein_coding missense_variant MODERATE 49A>G Thr17Ala
M0120218 KCKFLOBI_00004 5840 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -2183A>T None
M0120219 KCKFLOBI_00008 5945 4 Oral 0.33 protein_coding synonymous_variant LOW 2223A>T Ala741Ala
M0120220 KCKFLOBI_00008 5960 4 Oral 0.33 protein_coding synonymous_variant LOW 2208G>A Lys736Lys
M0120221 KCKFLOBI_00008 5981 7 Oral 0.58 protein_coding synonymous_variant LOW 2187A>G Glu729Glu
M0120222 KCKFLOBI_00008 6008 6 Oral 0.50 protein_coding synonymous_variant LOW 2160G>A Glu720Glu
M0120223 KCKFLOBI_00008 6018 6 Oral 0.50 protein_coding missense_variant MODERATE 2150G>T Trp717Leu
M0120224 KCKFLOBI_00008 6035 6 Oral 0.50 protein_coding synonymous_variant LOW 2133C>A Thr711Thr
M0120225 KCKFLOBI_00008 6143 6 Oral 0.50 protein_coding synonymous_variant LOW 2025T>A Thr675Thr
M0120226 KCKFLOBI_00008 6149 6 Oral 0.50 protein_coding synonymous_variant LOW 2019T>C Asn673Asn
M0120227 KCKFLOBI_00008 6158 6 Oral 0.50 protein_coding synonymous_variant LOW 2010T>C Asn670Asn
M0120228 KCKFLOBI_00008 6164 6 Oral 0.50 protein_coding synonymous_variant LOW 2004A>T Val668Val
M0120229 KCKFLOBI_00008 6182 7 Oral 0.58 protein_coding synonymous_variant LOW 1986T>C Asp662Asp
M0120230 KCKFLOBI_00008 6191 7 Oral 0.58 protein_coding synonymous_variant LOW 1977A>T Ile659Ile
M0120231 KCKFLOBI_00008 6215 7 Oral 0.58 protein_coding synonymous_variant LOW 1953T>A Leu651Leu
M0120232 KCKFLOBI_00008 6221 5 Oral 0.42 protein_coding synonymous_variant LOW 1947G>A Val649Val
M0120233 KCKFLOBI_00008 6234 7 Oral 0.58 protein_coding missense_variant MODERATE 1934G>C Gly645Ala
M0120234 KCKFLOBI_00008 6241 4 Oral 0.33 protein_coding missense_variant MODERATE 1927G>A Val643Ile
M0120235 KCKFLOBI_00008 6276 7 Oral 0.58 protein_coding missense_variant MODERATE 1892A>G His631Arg
M0120236 KCKFLOBI_00008 6309 7 Oral 0.58 protein_coding missense_variant MODERATE 1859T>C Ile620Thr
M0120237 KCKFLOBI_00008 6326 7 Oral 0.58 protein_coding synonymous_variant LOW 1842C>T Ile614Ile
M0120238 KCKFLOBI_00008 6329 5 Oral 0.42 protein_coding missense_variant MODERATE 1839C>A Asp613Glu
M0120239 KCKFLOBI_00008 6407 6 Oral 0.50 protein_coding synonymous_variant LOW 1761G>A Glu587Glu
M0120240 KCKFLOBI_00008 6452 7 Oral 0.58 protein_coding synonymous_variant LOW 1716A>G Glu572Glu
M0120241 KCKFLOBI_00008 6500 4 Oral 0.33 protein_coding synonymous_variant LOW 1668G>T Val556Val
M0120242 KCKFLOBI_00008 6509 6 Oral 0.50 protein_coding synonymous_variant LOW 1659A>G Gln553Gln
M0120243 KCKFLOBI_00008 6530 7 Oral 0.58 protein_coding synonymous_variant LOW 1638A>G Lys546Lys
M0120244 KCKFLOBI_00008 6557 7 Oral 0.58 protein_coding synonymous_variant LOW 1611A>G Leu537Leu
M0120245 KCKFLOBI_00008 6587 5 Oral 0.42 protein_coding synonymous_variant LOW 1581T>C Ser527Ser
M0120246 KCKFLOBI_00008 6605 6 Oral 0.50 protein_coding synonymous_variant LOW 1563T>C Asp521Asp
M0120247 KCKFLOBI_00008 6608 6 Oral 0.50 protein_coding synonymous_variant LOW 1560C>T His520His
M0120248 KCKFLOBI_00008 6667 4 Oral 0.33 protein_coding missense_variant MODERATE 1501G>A Ala501Thr
M0120249 KCKFLOBI_00008 6695 6 Oral 0.50 protein_coding synonymous_variant LOW 1473T>C Cys491Cys
M0120250 KCKFLOBI_00008 6797 4 Oral 0.33 protein_coding synonymous_variant LOW 1371T>C Ser457Ser
M0120251 KCKFLOBI_00008 6863 4 Oral 0.33 protein_coding synonymous_variant LOW 1305G>A Val435Val
M0120252 KCKFLOBI_00008 6896 4 Oral 0.33 protein_coding synonymous_variant LOW 1272T>C Pro424Pro
M0120253 KCKFLOBI_00008 6929 4 Oral 0.33 protein_coding synonymous_variant LOW 1239C>A Arg413Arg
M0120254 KCKFLOBI_00008 7028 4 Oral 0.33 protein_coding synonymous_variant LOW 1140C>T Ala380Ala
M0120255 KCKFLOBI_00008 7220 5 Oral 0.42 protein_coding synonymous_variant LOW 948C>T Ser316Ser
M0120256 KCKFLOBI_00008 7268 4 Oral 0.33 protein_coding synonymous_variant LOW 900C>T Asn300Asn
M0120257 KCKFLOBI_00008 7352 4 Oral 0.33 protein_coding synonymous_variant LOW 816T>C Asn272Asn
M0120258 KCKFLOBI_00008 7367 6 Oral 0.50 protein_coding synonymous_variant LOW 801C>T Pro267Pro
M0120259 KCKFLOBI_00008 7376 6 Oral 0.50 protein_coding synonymous_variant LOW 792T>C Leu264Leu
M0120260 KCKFLOBI_00008 7403 4 Oral 0.33 protein_coding synonymous_variant LOW 765A>G Glu255Glu
M0120261 KCKFLOBI_00008 7418 4 Oral 0.33 protein_coding synonymous_variant LOW 750A>G Val250Val
M0120262 KCKFLOBI_00008 7436 4 Oral 0.33 protein_coding synonymous_variant LOW 732T>A Ala244Ala
M0120263 KCKFLOBI_00008 7445 4 Oral 0.33 protein_coding synonymous_variant LOW 723T>C Asp241Asp
M0120264 KCKFLOBI_00008 7448 4 Oral 0.33 protein_coding synonymous_variant LOW 720C>T Phe240Phe
M0120265 KCKFLOBI_00008 7469 4 Oral 0.33 protein_coding synonymous_variant LOW 699T>C Thr233Thr
M0120266 KCKFLOBI_00008 7478 3 Oral 0.25 protein_coding synonymous_variant LOW 690T>C Thr230Thr
M0120267 KCKFLOBI_00008 7553 6 Oral 0.50 protein_coding synonymous_variant LOW 615C>T Asn205Asn
M0120268 KCKFLOBI_00008 7628 4 Oral 0.33 protein_coding synonymous_variant LOW 540A>T Ala180Ala
M0120269 KCKFLOBI_00008 7709 5 Oral 0.42 protein_coding synonymous_variant LOW 459G>A Pro153Pro
M0120270 KCKFLOBI_00008 7754 3 Oral 0.25 protein_coding synonymous_variant LOW 414C>T Asn138Asn
M0120271 KCKFLOBI_00008 7796 4 Oral 0.33 protein_coding synonymous_variant LOW 372C>T Pro124Pro
M0120272 KCKFLOBI_00008 7808 3 Oral 0.25 protein_coding synonymous_variant LOW 360C>T Ile120Ile
M0120273 KCKFLOBI_00008 7958 3 Oral 0.25 protein_coding synonymous_variant LOW 210A>G Ala70Ala
M0120274 KCKFLOBI_00008 7988 6 Oral 0.50 protein_coding synonymous_variant LOW 180T>C Leu60Leu
M0120275 KCKFLOBI_00004 8182 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -4525T>G None
M0120276 KCKFLOBI_00008 6749 3 Oral 0.25 protein_coding synonymous_variant LOW 1419C>T Thr473Thr
M0120277 KCKFLOBI_00008 6902 3 Oral 0.25 protein_coding synonymous_variant LOW 1266T>C Tyr422Tyr
M0120278 KCKFLOBI_00008 6914 3 Oral 0.25 protein_coding synonymous_variant LOW 1254G>A Glu418Glu
M0120279 KCKFLOBI_00008 7556 3 Oral 0.25 protein_coding synonymous_variant LOW 612G>A Glu204Glu
M0120280 KCKFLOBI_00008 7673 3 Oral 0.25 protein_coding synonymous_variant LOW 495G>A Lys165Lys
M0120281 KCKFLOBI_00008 8060 3 Oral 0.25 protein_coding synonymous_variant LOW 108A>G Val36Val
M0120282 KCKFLOBI_00004 8180 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4523T>C None
M0120283 KCKFLOBI_00004 8222 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -4565T>C None
M0120284 KCKFLOBI_00006 5303 4 Oral 0.33 protein_coding synonymous_variant LOW 123A>G Ser41Ser
M0120285 KCKFLOBI_00008 6002 3 Oral 0.25 protein_coding missense_variant MODERATE 2166G>T Glu722Asp
M0120286 KCKFLOBI_00008 6020 4 Oral 0.33 protein_coding synonymous_variant LOW 2148T>C Ile716Ile
M0120287 KCKFLOBI_00008 6026 4 Oral 0.33 protein_coding synonymous_variant LOW 2142C>T Ile714Ile
M0120288 KCKFLOBI_00008 6051 4 Oral 0.33 protein_coding missense_variant MODERATE 2117A>G Asn706Ser
M0120289 KCKFLOBI_00005 4282 3 Oral 0.25 protein_coding synonymous_variant LOW 438C>A Ala146Ala
M0120290 KCKFLOBI_00008 6539 3 Oral 0.25 protein_coding synonymous_variant LOW 1629A>G Val543Val
M0120291 KCKFLOBI_00001 192 3 Oral 0.25 protein_coding synonymous_variant LOW 162C>T Gly54Gly
M0120292 KCKFLOBI_00002 1153 3 Oral 0.25 protein_coding missense_variant MODERATE 580A>C Lys194Gln
M0120293 KCKFLOBI_00002 1182 3 Oral 0.25 protein_coding synonymous_variant LOW 609C>T Ile203Ile






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term