Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2380
  Reference Plasmid   1111525849768046_bin.37__k141_140930
  Reference Plasmid Size   5253
  Reference Plasmid GC Content   0.42
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0120305 FNEEOHOH_00001 34 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -267G>A None
M0120306 FNEEOHOH_00001 35 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -266C>T None
M0120307 FNEEOHOH_00001 99 6 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -202T>C None
M0120308 FNEEOHOH_00001 100 6 Oral 0.60 protein_coding upstream_gene_variant MODIFIER -201T>C None
M0120309 FNEEOHOH_00001 116 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -185T>C None
M0120310 FNEEOHOH_00001 163 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -138T>C None
M0120311 FNEEOHOH_00002 677 5 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -67G>A None
M0120312 FNEEOHOH_00002 995 7 Oral 0.70 protein_coding synonymous_variant LOW 252G>A Gln84Gln
M0120313 FNEEOHOH_00002 1105 7 Oral 0.70 protein_coding missense_variant MODERATE 362G>A Ser121Asn
M0120314 FNEEOHOH_00002 1308 5 Oral 0.50 protein_coding missense_variant MODERATE 565G>A Val189Ile
M0120315 FNEEOHOH_00002 1364 3 Oral 0.30 protein_coding synonymous_variant LOW 621T>A Ala207Ala
M0120316 FNEEOHOH_00002 1535 9 Oral 0.90 protein_coding synonymous_variant LOW 792T>C Gly264Gly
M0120317 FNEEOHOH_00002 1751 7 Oral 0.70 protein_coding synonymous_variant LOW 1008T>A Ser336Ser
M0120318 FNEEOHOH_00002 1754 7 Oral 0.70 protein_coding synonymous_variant LOW 1011T>A Thr337Thr
M0120319 FNEEOHOH_00002 1910 9 Oral 0.90 protein_coding synonymous_variant LOW 1167T>C Asn389Asn
M0120320 FNEEOHOH_00003 2461 6 Oral 0.60 protein_coding missense_variant MODERATE 466A>G Lys156Glu
M0120321 FNEEOHOH_00003 2703 8 Oral 0.80 protein_coding synonymous_variant LOW 708G>A Glu236Glu
M0120322 FNEEOHOH_00003 2714 9 Oral 0.90 protein_coding missense_variant MODERATE 719G>A Cys240Tyr
M0120323 FNEEOHOH_00003 2716 9 Oral 0.90 protein_coding missense_variant MODERATE 721C>A Leu241Ile
M0120324 FNEEOHOH_00003 2922 8 Oral 0.80 protein_coding missense_variant MODERATE 927G>T Met309Ile
M0120325 FNEEOHOH_00003 2925 8 Oral 0.80 protein_coding synonymous_variant LOW 930T>C Asp310Asp
M0120326 FNEEOHOH_00001 3033 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2496T>A None
M0120327 FNEEOHOH_00001 3116 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2579C>T None
M0120328 FNEEOHOH_00001 3144 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2607A>G None
M0120329 FNEEOHOH_00001 3158 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *2621A>C None
M0120330 FNEEOHOH_00001 3162 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *2625G>C None
M0120331 FNEEOHOH_00001 3200 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *2663T>C None
M0120332 FNEEOHOH_00001 3203 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *2666G>A None
M0120333 FNEEOHOH_00001 3204 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2667C>T None
M0120334 FNEEOHOH_00001 3315 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2778A>G None
M0120335 FNEEOHOH_00001 3316 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2779C>A None
M0120336 FNEEOHOH_00001 3324 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *2787T>G None
M0120337 FNEEOHOH_00001 3690 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *3153T>C None
M0120338 FNEEOHOH_00001 3768 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *3231A>G None
M0120339 FNEEOHOH_00001 3840 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3303G>A None
M0120340 FNEEOHOH_00001 3897 7 Oral 0.70 protein_coding downstream_gene_variant MODIFIER *3360A>G None
M0120341 FNEEOHOH_00001 3993 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *3456C>T None
M0120342 FNEEOHOH_00001 4161 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3624T>G None
M0120343 FNEEOHOH_00001 4173 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *3636A>G None
M0120344 FNEEOHOH_00001 4194 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *3657A>G None
M0120345 FNEEOHOH_00001 4197 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *3660G>A None
M0120346 FNEEOHOH_00001 4250 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3713G>C None
M0120347 FNEEOHOH_00001 4335 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *3798A>G None
M0120348 FNEEOHOH_00001 4344 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *3807G>A None
M0120349 FNEEOHOH_00001 4515 7 Oral 0.70 protein_coding downstream_gene_variant MODIFIER *3978A>T None
M0120350 FNEEOHOH_00001 4531 7 Oral 0.70 protein_coding downstream_gene_variant MODIFIER *3994C>G None
M0120351 FNEEOHOH_00001 4824 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4287T>A None
M0120352 FNEEOHOH_00001 4827 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4290T>A None
M0120353 FNEEOHOH_00001 4865 6 Oral 0.60 protein_coding downstream_gene_variant MODIFIER *4328C>T None
M0120354 FNEEOHOH_00001 4872 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4335G>A None
M0120355 FNEEOHOH_00001 4873 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *4336C>A None
M0120356 FNEEOHOH_00001 4890 7 Oral 0.70 protein_coding downstream_gene_variant MODIFIER *4353T>A None
M0120357 FNEEOHOH_00001 4945 7 Oral 0.70 protein_coding downstream_gene_variant MODIFIER *4408A>G None
M0120358 FNEEOHOH_00001 5009 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4472T>C None
M0120359 FNEEOHOH_00001 5025 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *4488T>G None
M0120360 FNEEOHOH_00001 5128 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4591T>C None
M0120361 FNEEOHOH_00001 5223 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4686A>T None
M0120362 FNEEOHOH_00001 142 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -159A>C None
M0120363 FNEEOHOH_00001 146 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -155C>T None
M0120364 FNEEOHOH_00001 156 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -145A>T None
M0120365 FNEEOHOH_00001 183 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -118C>T None
M0120366 FNEEOHOH_00001 348 5 Oral 0.50 protein_coding synonymous_variant LOW 48C>T Leu16Leu
M0120367 FNEEOHOH_00001 420 7 Oral 0.70 protein_coding synonymous_variant LOW 120A>T Thr40Thr
M0120368 FNEEOHOH_00001 423 6 Oral 0.60 protein_coding synonymous_variant LOW 123A>T Val41Val
M0120369 FNEEOHOH_00001 432 4 Oral 0.40 protein_coding synonymous_variant LOW 132C>T Ile44Ile
M0120370 FNEEOHOH_00002 1253 4 Oral 0.40 protein_coding synonymous_variant LOW 510A>C Thr170Thr
M0120371 FNEEOHOH_00001 3568 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *3031T>G None
M0120372 FNEEOHOH_00001 3621 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3084A>G None
M0120373 FNEEOHOH_00001 3722 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *3185T>C None
M0120374 FNEEOHOH_00001 4053 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3516T>G None
M0120375 FNEEOHOH_00001 4054 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3517A>G None
M0120376 FNEEOHOH_00001 4065 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *3528T>C None
M0120377 FNEEOHOH_00001 4128 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3591T>C None
M0120378 FNEEOHOH_00001 4392 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *3855T>C None
M0120379 FNEEOHOH_00001 4563 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *4026C>T None
M0120380 FNEEOHOH_00001 4566 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *4029C>A None
M0120381 FNEEOHOH_00002 682 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -62A>T None
M0120382 FNEEOHOH_00002 690 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -54A>G None
M0120383 FNEEOHOH_00002 698 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -46G>A None
M0120384 FNEEOHOH_00002 1382 3 Oral 0.30 protein_coding synonymous_variant LOW 639T>C Thr213Thr
M0120385 FNEEOHOH_00003 2745 6 Oral 0.60 protein_coding synonymous_variant LOW 750T>C Ala250Ala
M0120386 FNEEOHOH_00003 2748 5 Oral 0.50 protein_coding synonymous_variant LOW 753C>T Leu251Leu
M0120387 FNEEOHOH_00003 2824 5 Oral 0.50 protein_coding missense_variant MODERATE 829A>G Lys277Glu
M0120388 FNEEOHOH_00003 2831 3 Oral 0.30 protein_coding missense_variant MODERATE 836C>A Thr279Lys
M0120389 FNEEOHOH_00003 2832 3 Oral 0.30 protein_coding synonymous_variant LOW 837A>C Thr279Thr
M0120390 FNEEOHOH_00001 3074 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2537C>A None
M0120391 FNEEOHOH_00001 3075 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2538C>A None
M0120392 FNEEOHOH_00001 3143 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2606C>T None
M0120393 FNEEOHOH_00001 3280 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2743T>A None
M0120394 FNEEOHOH_00001 3283 5 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *2746A>G None
M0120395 FNEEOHOH_00001 3405 4 Oral 0.40 protein_coding downstream_gene_variant MODIFIER *2868A>G None
M0120396 FNEEOHOH_00001 3474 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2937A>G None
M0120397 FNEEOHOH_00002 675 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -69C>T None
M0120398 FNEEOHOH_00003 2664 3 Oral 0.30 protein_coding synonymous_variant LOW 669T>C Gly223Gly
M0120399 FNEEOHOH_00001 67 4 Oral 0.40 protein_coding upstream_gene_variant MODIFIER -234A>C None
M0120400 FNEEOHOH_00001 68 3 Oral 0.30 protein_coding upstream_gene_variant MODIFIER -233G>A None
M0120401 FNEEOHOH_00001 4249 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *3712T>A None
M0120402 FNEEOHOH_00003 2778 3 Oral 0.30 protein_coding synonymous_variant LOW 783A>C Ala261Ala
M0120403 FNEEOHOH_00001 3312 3 Oral 0.30 protein_coding downstream_gene_variant MODIFIER *2775C>A None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term