Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2381
  Reference Plasmid   1111525849768046_bin.37__k141_14482
  Reference Plasmid Size   12050
  Reference Plasmid GC Content   0.41
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0120404 DCEGIPJE_00001 698 5 Oral 0.42 protein_coding synonymous_variant LOW 300T>G Val100Val
M0120405 DCEGIPJE_00001 704 6 Oral 0.50 protein_coding synonymous_variant LOW 306G>A Glu102Glu
M0120406 DCEGIPJE_00001 794 6 Oral 0.50 protein_coding synonymous_variant LOW 396G>A Ala132Ala
M0120407 DCEGIPJE_00001 863 6 Oral 0.50 protein_coding synonymous_variant LOW 465T>C Ile155Ile
M0120408 DCEGIPJE_00001 929 5 Oral 0.42 protein_coding synonymous_variant LOW 531C>T Asn177Asn
M0120409 DCEGIPJE_00001 938 6 Oral 0.50 protein_coding synonymous_variant LOW 540T>G Thr180Thr
M0120410 DCEGIPJE_00001 1019 6 Oral 0.50 protein_coding synonymous_variant LOW 621G>A Thr207Thr
M0120411 DCEGIPJE_00001 1133 5 Oral 0.42 protein_coding synonymous_variant LOW 735A>G Thr245Thr
M0120412 DCEGIPJE_00001 1151 6 Oral 0.50 protein_coding synonymous_variant LOW 753A>T Thr251Thr
M0120413 DCEGIPJE_00001 1154 6 Oral 0.50 protein_coding synonymous_variant LOW 756T>C Asn252Asn
M0120414 DCEGIPJE_00001 1157 6 Oral 0.50 protein_coding synonymous_variant LOW 759G>C Thr253Thr
M0120415 DCEGIPJE_00001 1158 6 Oral 0.50 protein_coding missense_variant MODERATE 760C>T Leu254Phe
M0120416 DCEGIPJE_00001 1160 6 Oral 0.50 protein_coding synonymous_variant LOW 762T>G Leu254Leu
M0120417 DCEGIPJE_00001 1177 6 Oral 0.50 protein_coding missense_variant MODERATE 779G>A Arg260Lys
M0120418 DCEGIPJE_00001 1223 6 Oral 0.50 protein_coding synonymous_variant LOW 825T>C His275His
M0120419 DCEGIPJE_00001 1262 6 Oral 0.50 protein_coding synonymous_variant LOW 864C>A Arg288Arg
M0120420 DCEGIPJE_00001 1271 6 Oral 0.50 protein_coding synonymous_variant LOW 873T>C Arg291Arg
M0120421 DCEGIPJE_00001 1304 6 Oral 0.50 protein_coding synonymous_variant LOW 906A>G Val302Val
M0120422 DCEGIPJE_00001 1346 7 Oral 0.58 protein_coding synonymous_variant LOW 948A>T Gly316Gly
M0120423 DCEGIPJE_00001 1400 5 Oral 0.42 protein_coding synonymous_variant LOW 1002G>A Lys334Lys
M0120424 DCEGIPJE_00002 1472 7 Oral 0.58 protein_coding synonymous_variant LOW 39A>G Lys13Lys
M0120425 DCEGIPJE_00002 1530 5 Oral 0.42 protein_coding missense_variant MODERATE 97A>G Lys33Glu
M0120426 DCEGIPJE_00003 1581 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -1204A>T None
M0120427 DCEGIPJE_00003 1787 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -998T>C None
M0120428 DCEGIPJE_00003 1794 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -991T>C None
M0120429 DCEGIPJE_00003 1800 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -985G>A None
M0120430 DCEGIPJE_00003 1801 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -984T>A None
M0120431 DCEGIPJE_00003 1813 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -972C>T None
M0120432 DCEGIPJE_00003 1818 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -967T>C None
M0120433 DCEGIPJE_00003 1822 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -963G>A None
M0120434 DCEGIPJE_00003 1829 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -956C>T None
M0120435 DCEGIPJE_00003 1857 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -928G>A None
M0120436 DCEGIPJE_00003 1893 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -892T>A None
M0120437 DCEGIPJE_00003 1934 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -851C>T None
M0120438 DCEGIPJE_00003 1959 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -826G>A None
M0120439 DCEGIPJE_00003 2204 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -581G>A None
M0120440 DCEGIPJE_00003 2217 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -568T>C None
M0120441 DCEGIPJE_00003 2248 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -537T>C None
M0120442 DCEGIPJE_00003 2532 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -253T>C None
M0120443 DCEGIPJE_00003 2533 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -252G>C None
M0120444 DCEGIPJE_00003 2570 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -215G>A None
M0120445 DCEGIPJE_00003 2580 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -205G>T None
M0120446 DCEGIPJE_00003 2618 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -167G>A None
M0120447 DCEGIPJE_00003 2621 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -164G>A None
M0120448 DCEGIPJE_00003 2623 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -162A>G None
M0120449 DCEGIPJE_00003 2628 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -157T>A None
M0120450 DCEGIPJE_00003 2659 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -126A>T None
M0120451 DCEGIPJE_00003 2677 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -108C>T None
M0120452 DCEGIPJE_00003 2874 4 Oral 0.33 protein_coding synonymous_variant LOW 90T>C Leu30Leu
M0120453 DCEGIPJE_00003 2931 4 Oral 0.33 protein_coding synonymous_variant LOW 147C>T Gly49Gly
M0120454 DCEGIPJE_00003 2950 4 Oral 0.33 protein_coding missense_variant MODERATE 166A>C Asn56His
M0120455 DCEGIPJE_00003 3018 4 Oral 0.33 protein_coding synonymous_variant LOW 234A>G Thr78Thr
M0120456 DCEGIPJE_00003 3060 6 Oral 0.50 protein_coding synonymous_variant LOW 276A>G Arg92Arg
M0120457 DCEGIPJE_00003 3231 5 Oral 0.42 protein_coding missense_variant MODERATE 447C>A Asp149Glu
M0120458 DCEGIPJE_00003 3234 6 Oral 0.50 protein_coding synonymous_variant LOW 450T>C His150His
M0120459 DCEGIPJE_00003 3243 5 Oral 0.42 protein_coding synonymous_variant LOW 459C>T Phe153Phe
M0120460 DCEGIPJE_00003 3465 3 Oral 0.25 protein_coding synonymous_variant LOW 681T>C Asn227Asn
M0120461 DCEGIPJE_00003 3523 4 Oral 0.33 protein_coding missense_variant MODERATE 739A>G Ile247Val
M0120462 DCEGIPJE_00003 3608 4 Oral 0.33 protein_coding missense_variant MODERATE 824G>T Ser275Ile
M0120463 DCEGIPJE_00003 3719 4 Oral 0.33 protein_coding missense_variant MODERATE 935C>G Thr312Ser
M0120464 DCEGIPJE_00003 3783 3 Oral 0.25 protein_coding synonymous_variant LOW 999A>G Leu333Leu
M0120465 DCEGIPJE_00003 3918 5 Oral 0.42 protein_coding synonymous_variant LOW 1134A>C Ile378Ile
M0120466 DCEGIPJE_00003 4278 5 Oral 0.42 protein_coding synonymous_variant LOW 1494T>C Gly498Gly
M0120467 DCEGIPJE_00003 4402 4 Oral 0.33 protein_coding missense_variant MODERATE 1618A>G Ile540Val
M0120468 DCEGIPJE_00003 2254 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -531T>C None
M0120469 DCEGIPJE_00003 2263 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -522A>G None
M0120470 DCEGIPJE_00003 2272 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -513G>A None
M0120471 DCEGIPJE_00003 2321 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -464A>T None
M0120472 DCEGIPJE_00003 2323 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -462A>G None
M0120473 DCEGIPJE_00003 2325 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -460A>G None
M0120474 DCEGIPJE_00003 2455 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -330C>G None
M0120475 DCEGIPJE_00003 2845 3 Oral 0.25 protein_coding missense_variant MODERATE 61G>T Ala21Ser
M0120476 DCEGIPJE_00003 3099 4 Oral 0.33 protein_coding synonymous_variant LOW 315T>A Ile105Ile
M0120477 DCEGIPJE_00003 3267 4 Oral 0.33 protein_coding synonymous_variant LOW 483T>C Ser161Ser
M0120478 DCEGIPJE_00003 3288 4 Oral 0.33 protein_coding synonymous_variant LOW 504T>C Phe168Phe
M0120479 DCEGIPJE_00003 3453 4 Oral 0.33 protein_coding synonymous_variant LOW 669A>G Gln223Gln
M0120480 DCEGIPJE_00003 3501 3 Oral 0.25 protein_coding missense_variant MODERATE 717C>G His239Gln
M0120481 DCEGIPJE_00003 3675 4 Oral 0.33 protein_coding synonymous_variant LOW 891C>G Val297Val
M0120482 DCEGIPJE_00003 3789 4 Oral 0.33 protein_coding synonymous_variant LOW 1005T>A Ala335Ala
M0120483 DCEGIPJE_00003 3798 3 Oral 0.25 protein_coding missense_variant MODERATE 1014C>G Asn338Lys
M0120484 DCEGIPJE_00003 3969 4 Oral 0.33 protein_coding synonymous_variant LOW 1185A>G Leu395Leu
M0120485 DCEGIPJE_00003 4026 3 Oral 0.25 protein_coding synonymous_variant LOW 1242T>C Gly414Gly
M0120486 DCEGIPJE_00003 4032 3 Oral 0.25 protein_coding synonymous_variant LOW 1248T>A Ile416Ile
M0120487 DCEGIPJE_00003 4039 3 Oral 0.25 protein_coding missense_variant MODERATE 1255G>A Ala419Thr
M0120488 DCEGIPJE_00003 4047 4 Oral 0.33 protein_coding synonymous_variant LOW 1263T>C Cys421Cys
M0120489 DCEGIPJE_00003 4090 3 Oral 0.25 protein_coding synonymous_variant LOW 1306T>C Leu436Leu
M0120490 DCEGIPJE_00003 4125 3 Oral 0.25 protein_coding synonymous_variant LOW 1341G>A Leu447Leu
M0120491 DCEGIPJE_00003 4159 3 Oral 0.25 protein_coding missense_variant MODERATE 1375C>T Leu459Phe
M0120492 DCEGIPJE_00003 4236 3 Oral 0.25 protein_coding synonymous_variant LOW 1452T>C Ile484Ile
M0120493 DCEGIPJE_00003 4242 4 Oral 0.33 protein_coding synonymous_variant LOW 1458A>T Gly486Gly
M0120494 DCEGIPJE_00003 4386 4 Oral 0.33 protein_coding synonymous_variant LOW 1602C>T Tyr534Tyr
M0120495 DCEGIPJE_00003 4390 4 Oral 0.33 protein_coding synonymous_variant LOW 1606C>T Leu536Leu
M0120496 DCEGIPJE_00001 169 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -230T>A None
M0120497 DCEGIPJE_00001 191 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -208C>G None
M0120498 DCEGIPJE_00001 248 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -151T>A None
M0120499 DCEGIPJE_00001 260 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -139T>C None
M0120500 DCEGIPJE_00001 261 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -138G>A None
M0120501 DCEGIPJE_00001 272 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -127A>G None
M0120502 DCEGIPJE_00001 279 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -120G>T None
M0120503 DCEGIPJE_00001 1208 3 Oral 0.25 protein_coding synonymous_variant LOW 810A>G Lys270Lys
M0120504 DCEGIPJE_00001 1402 3 Oral 0.25 protein_coding missense_variant MODERATE 1004T>G Met335Arg
M0120505 DCEGIPJE_00003 1984 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -801C>T None
M0120506 DCEGIPJE_00003 1989 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -796C>T None
M0120507 DCEGIPJE_00003 1994 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -791A>G None
M0120508 DCEGIPJE_00003 2015 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -770G>T None
M0120509 DCEGIPJE_00003 2101 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -684C>T None
M0120510 DCEGIPJE_00003 2192 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -593C>T None
M0120511 DCEGIPJE_00003 2257 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -528C>T None
M0120512 DCEGIPJE_00004 5932 3 Oral 0.25 protein_coding synonymous_variant LOW 978T>C Val326Val
M0120513 DCEGIPJE_00004 5944 3 Oral 0.25 protein_coding synonymous_variant LOW 966T>C Ala322Ala
M0120514 DCEGIPJE_00004 6004 3 Oral 0.25 protein_coding synonymous_variant LOW 906T>A Ala302Ala
M0120515 DCEGIPJE_00004 6028 3 Oral 0.25 protein_coding synonymous_variant LOW 882C>T Ile294Ile
M0120516 DCEGIPJE_00004 6385 3 Oral 0.25 protein_coding synonymous_variant LOW 525T>A Ala175Ala
M0120517 DCEGIPJE_00004 6550 3 Oral 0.25 protein_coding synonymous_variant LOW 360A>G Ala120Ala
M0120518 DCEGIPJE_00005 6992 3 Oral 0.25 protein_coding synonymous_variant LOW 576T>C Ile192Ile
M0120519 DCEGIPJE_00005 7079 3 Oral 0.25 protein_coding synonymous_variant LOW 489T>C Asn163Asn
M0120520 DCEGIPJE_00005 7109 3 Oral 0.25 protein_coding synonymous_variant LOW 459T>C Asn153Asn
M0120521 DCEGIPJE_00005 7163 3 Oral 0.25 protein_coding synonymous_variant LOW 405A>G Gln135Gln
M0120522 DCEGIPJE_00005 7200 3 Oral 0.25 protein_coding missense_variant MODERATE 368G>A Ser123Asn
M0120523 DCEGIPJE_00005 7340 3 Oral 0.25 protein_coding synonymous_variant LOW 228T>C Arg76Arg
M0120524 DCEGIPJE_00006 7695 3 Oral 0.25 protein_coding missense_variant MODERATE 280A>C Ser94Arg
M0120525 DCEGIPJE_00006 7753 3 Oral 0.25 protein_coding synonymous_variant LOW 222A>T Ile74Ile
M0120526 DCEGIPJE_00006 7805 3 Oral 0.25 protein_coding missense_variant MODERATE 170T>A Leu57Gln
M0120527 DCEGIPJE_00006 7950 3 Oral 0.25 protein_coding missense_variant MODERATE 25A>C Ile9Leu
M0120528 DCEGIPJE_00006 7972 3 Oral 0.25 protein_coding start_lost HIGH 3G>A Met1?
M0120529 DCEGIPJE_00007 8272 3 Oral 0.25 protein_coding missense_variant MODERATE 1214C>A Thr405Asn
M0120530 DCEGIPJE_00007 8283 3 Oral 0.25 protein_coding synonymous_variant LOW 1203T>C Gly401Gly
M0120531 DCEGIPJE_00007 8298 3 Oral 0.25 protein_coding synonymous_variant LOW 1188A>G Lys396Lys
M0120532 DCEGIPJE_00007 8309 3 Oral 0.25 protein_coding missense_variant MODERATE 1177G>A Val393Ile
M0120533 DCEGIPJE_00007 8316 3 Oral 0.25 protein_coding synonymous_variant LOW 1170A>G Leu390Leu
M0120534 DCEGIPJE_00007 8322 3 Oral 0.25 protein_coding synonymous_variant LOW 1164T>C Asn388Asn
M0120535 DCEGIPJE_00007 8379 3 Oral 0.25 protein_coding missense_variant MODERATE 1107T>A Asp369Glu
M0120536 DCEGIPJE_00007 8385 3 Oral 0.25 protein_coding synonymous_variant LOW 1101T>C Ser367Ser
M0120537 DCEGIPJE_00007 8386 3 Oral 0.25 protein_coding missense_variant MODERATE 1100C>G Ser367Cys
M0120538 DCEGIPJE_00007 8387 3 Oral 0.25 protein_coding missense_variant MODERATE 1099T>A Ser367Thr
M0120539 DCEGIPJE_00007 8418 3 Oral 0.25 protein_coding synonymous_variant LOW 1068T>C Tyr356Tyr
M0120540 DCEGIPJE_00007 8460 3 Oral 0.25 protein_coding synonymous_variant LOW 1026T>C Val342Val
M0120541 DCEGIPJE_00007 8462 3 Oral 0.25 protein_coding missense_variant MODERATE 1024G>A Val342Ile
M0120542 DCEGIPJE_00008 9615 3 Oral 0.25 protein_coding synonymous_variant LOW 696G>A Ala232Ala
M0120543 DCEGIPJE_00008 9705 3 Oral 0.25 protein_coding synonymous_variant LOW 606T>C His202His
M0120544 DCEGIPJE_00008 9711 3 Oral 0.25 protein_coding synonymous_variant LOW 600C>T Gly200Gly
M0120545 DCEGIPJE_00008 9765 3 Oral 0.25 protein_coding synonymous_variant LOW 546C>T Thr182Thr
M0120546 DCEGIPJE_00008 9768 3 Oral 0.25 protein_coding synonymous_variant LOW 543T>C Cys181Cys
M0120547 DCEGIPJE_00008 9769 3 Oral 0.25 protein_coding missense_variant MODERATE 542G>A Cys181Tyr
M0120548 DCEGIPJE_00008 9801 3 Oral 0.25 protein_coding synonymous_variant LOW 510A>G Leu170Leu
M0120549 DCEGIPJE_00008 9846 3 Oral 0.25 protein_coding missense_variant MODERATE 465G>T Met155Ile
M0120550 DCEGIPJE_00008 9849 3 Oral 0.25 protein_coding missense_variant MODERATE 462A>T Glu154Asp
M0120551 DCEGIPJE_00008 9852 3 Oral 0.25 protein_coding missense_variant MODERATE 459G>C Glu153Asp
M0120552 DCEGIPJE_00008 9972 3 Oral 0.25 protein_coding synonymous_variant LOW 339T>C Ala113Ala
M0120553 DCEGIPJE_00008 9977 3 Oral 0.25 protein_coding missense_variant MODERATE 334T>G Ser112Ala
M0120554 DCEGIPJE_00008 10050 3 Oral 0.25 protein_coding synonymous_variant LOW 261A>G Leu87Leu
M0120555 DCEGIPJE_00008 10080 3 Oral 0.25 protein_coding synonymous_variant LOW 231A>T Thr77Thr
M0120556 DCEGIPJE_00008 10123 3 Oral 0.25 protein_coding missense_variant MODERATE 188G>A Arg63Lys
M0120557 DCEGIPJE_00008 10302 3 Oral 0.25 protein_coding synonymous_variant LOW 9A>T Ile3Ile
M0120558 DCEGIPJE_00004 10364 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3455G>A None
M0120559 DCEGIPJE_00004 10383 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3474A>G None
M0120560 DCEGIPJE_00004 10434 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3525C>T None
M0120561 DCEGIPJE_00004 10453 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3544T>A None
M0120562 DCEGIPJE_00004 10493 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -3584A>G None
M0120563 DCEGIPJE_00009 10565 3 Oral 0.25 protein_coding missense_variant MODERATE 1379A>C Glu460Ala
M0120564 DCEGIPJE_00009 10732 3 Oral 0.25 protein_coding synonymous_variant LOW 1212T>A Gly404Gly
M0120565 DCEGIPJE_00009 10818 3 Oral 0.25 protein_coding synonymous_variant LOW 1126T>C Leu376Leu
M0120566 DCEGIPJE_00009 10998 3 Oral 0.25 protein_coding synonymous_variant LOW 946A>C Arg316Arg
M0120567 DCEGIPJE_00001 292 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -107A>G None
M0120568 DCEGIPJE_00001 293 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -106C>A None
M0120569 DCEGIPJE_00003 2180 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -605C>T None
M0120570 DCEGIPJE_00003 2498 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -287A>G None
M0120571 DCEGIPJE_00003 2499 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -286A>G None
M0120572 DCEGIPJE_00003 2504 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -281G>A None
M0120573 DCEGIPJE_00003 2505 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -280C>G None
M0120574 DCEGIPJE_00003 4419 3 Oral 0.25 protein_coding synonymous_variant LOW 1635A>G Ala545Ala






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term