Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2388
  Reference Plasmid   1111525849768046_bin.37__k141_157147
  Reference Plasmid Size   9104
  Reference Plasmid GC Content   0.38
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0120916 DEBHEJMP_00001 72 4 Oral 0.33 protein_coding missense_variant MODERATE 52A>G Ile18Val
M0120917 DEBHEJMP_00001 245 9 Oral 0.75 protein_coding synonymous_variant LOW 225C>T Tyr75Tyr
M0120918 DEBHEJMP_00001 314 9 Oral 0.75 protein_coding synonymous_variant LOW 294A>T Val98Val
M0120919 DEBHEJMP_00001 476 9 Oral 0.75 protein_coding synonymous_variant LOW 456A>T Leu152Leu
M0120920 DEBHEJMP_00001 517 4 Oral 0.33 protein_coding missense_variant MODERATE 497C>T Ala166Val
M0120921 DEBHEJMP_00001 662 9 Oral 0.75 protein_coding synonymous_variant LOW 642G>A Glu214Glu
M0120922 DEBHEJMP_00001 977 3 Oral 0.25 protein_coding synonymous_variant LOW 957C>T Phe319Phe
M0120923 DEBHEJMP_00001 1091 10 Oral 0.83 protein_coding synonymous_variant LOW 1071C>T Asn357Asn
M0120924 DEBHEJMP_00001 1250 3 Oral 0.25 protein_coding synonymous_variant LOW 1230C>T Val410Val
M0120925 DEBHEJMP_00001 1292 9 Oral 0.75 protein_coding synonymous_variant LOW 1272A>G Leu424Leu
M0120926 DEBHEJMP_00001 1325 8 Oral 0.67 protein_coding synonymous_variant LOW 1305G>A Leu435Leu
M0120927 DEBHEJMP_00001 1439 10 Oral 0.83 protein_coding synonymous_variant LOW 1419C>T Asp473Asp
M0120928 DEBHEJMP_00001 1442 10 Oral 0.83 protein_coding synonymous_variant LOW 1422C>A Pro474Pro
M0120929 DEBHEJMP_00001 1505 10 Oral 0.83 protein_coding synonymous_variant LOW 1485T>C Thr495Thr
M0120930 DEBHEJMP_00001 1529 8 Oral 0.67 protein_coding synonymous_variant LOW 1509A>T Ala503Ala
M0120931 DEBHEJMP_00001 1559 9 Oral 0.75 protein_coding synonymous_variant LOW 1539C>T Ala513Ala
M0120932 DEBHEJMP_00001 1589 7 Oral 0.58 protein_coding synonymous_variant LOW 1569C>T Asp523Asp
M0120933 DEBHEJMP_00001 1608 9 Oral 0.75 protein_coding missense_variant MODERATE 1588A>G Ile530Val
M0120934 DEBHEJMP_00001 1790 9 Oral 0.75 protein_coding synonymous_variant LOW 1770G>A Ala590Ala
M0120935 DEBHEJMP_00002 1811 10 Oral 0.83 protein_coding upstream_gene_variant MODIFIER -12A>C None
M0120936 DEBHEJMP_00002 1972 8 Oral 0.67 protein_coding synonymous_variant LOW 150C>T Tyr50Tyr
M0120937 DEBHEJMP_00002 1997 6 Oral 0.50 protein_coding missense_variant MODERATE 175G>A Val59Ile
M0120938 DEBHEJMP_00002 2104 6 Oral 0.50 protein_coding synonymous_variant LOW 282T>C Ser94Ser
M0120939 DEBHEJMP_00002 2197 9 Oral 0.75 protein_coding synonymous_variant LOW 375T>C Ile125Ile
M0120940 DEBHEJMP_00002 2512 4 Oral 0.33 protein_coding synonymous_variant LOW 690T>C Asp230Asp
M0120941 DEBHEJMP_00002 2545 3 Oral 0.25 protein_coding synonymous_variant LOW 723A>T Val241Val
M0120942 DEBHEJMP_00002 2555 4 Oral 0.33 protein_coding synonymous_variant LOW 733T>C Leu245Leu
M0120943 DEBHEJMP_00002 2641 4 Oral 0.33 protein_coding synonymous_variant LOW 819A>T Ile273Ile
M0120944 DEBHEJMP_00002 2656 5 Oral 0.42 protein_coding synonymous_variant LOW 834G>C Thr278Thr
M0120945 DEBHEJMP_00002 2731 4 Oral 0.33 protein_coding synonymous_variant LOW 909T>C Ile303Ile
M0120946 DEBHEJMP_00002 2797 4 Oral 0.33 protein_coding synonymous_variant LOW 975C>T Asp325Asp
M0120947 DEBHEJMP_00003 3065 9 Oral 0.75 protein_coding synonymous_variant LOW 60T>C Ile20Ile
M0120948 DEBHEJMP_00003 3548 10 Oral 0.83 protein_coding synonymous_variant LOW 543T>C Thr181Thr
M0120949 DEBHEJMP_00003 3645 5 Oral 0.42 protein_coding synonymous_variant LOW 640T>C Leu214Leu
M0120950 DEBHEJMP_00003 3647 8 Oral 0.67 protein_coding synonymous_variant LOW 642G>A Leu214Leu
M0120951 DEBHEJMP_00003 3659 3 Oral 0.25 protein_coding synonymous_variant LOW 654T>C Asn218Asn
M0120952 DEBHEJMP_00003 3764 6 Oral 0.50 protein_coding synonymous_variant LOW 759C>T Ala253Ala
M0120953 DEBHEJMP_00003 3855 6 Oral 0.50 protein_coding missense_variant MODERATE 850T>G Ser284Ala
M0120954 DEBHEJMP_00002 2734 4 Oral 0.33 protein_coding synonymous_variant LOW 912C>T Ile304Ile
M0120955 DEBHEJMP_00002 2932 3 Oral 0.25 protein_coding synonymous_variant LOW 1110G>A Glu370Glu
M0120956 DEBHEJMP_00003 3565 5 Oral 0.42 protein_coding missense_variant MODERATE 560C>G Ser187Trp
M0120957 DEBHEJMP_00003 3797 4 Oral 0.33 protein_coding synonymous_variant LOW 792C>T Asp264Asp
M0120958 DEBHEJMP_00003 3845 4 Oral 0.33 protein_coding synonymous_variant LOW 840A>G Lys280Lys
M0120959 DEBHEJMP_00003 4011 6 Oral 0.50 protein_coding synonymous_variant LOW 1006T>C Leu336Leu
M0120960 DEBHEJMP_00003 4029 6 Oral 0.50 protein_coding missense_variant MODERATE 1024A>C Lys342Gln
M0120961 DEBHEJMP_00003 4034 5 Oral 0.42 protein_coding synonymous_variant LOW 1029C>T Ile343Ile
M0120962 DEBHEJMP_00003 4050 6 Oral 0.50 protein_coding missense_variant MODERATE 1045G>A Gly349Ser
M0120963 DEBHEJMP_00003 4091 7 Oral 0.58 protein_coding synonymous_variant LOW 1086A>G Lys362Lys
M0120964 DEBHEJMP_00003 4147 8 Oral 0.67 protein_coding missense_variant MODERATE 1142G>A Ser381Asn
M0120965 DEBHEJMP_00003 4217 8 Oral 0.67 protein_coding synonymous_variant LOW 1212A>G Ser404Ser
M0120966 DEBHEJMP_00003 4430 7 Oral 0.58 protein_coding missense_variant MODERATE 1425G>A Met475Ile
M0120967 DEBHEJMP_00003 4632 3 Oral 0.25 protein_coding missense_variant MODERATE 1627A>T Thr543Ser
M0120968 DEBHEJMP_00003 4658 5 Oral 0.42 protein_coding missense_variant MODERATE 1653A>T Lys551Asn
M0120969 DEBHEJMP_00003 4659 4 Oral 0.33 protein_coding missense_variant MODERATE 1654G>A Asp552Asn
M0120970 DEBHEJMP_00003 4661 3 Oral 0.25 protein_coding missense_variant MODERATE 1656T>A Asp552Glu
M0120971 DEBHEJMP_00003 4664 3 Oral 0.25 protein_coding synonymous_variant LOW 1659G>A Thr553Thr
M0120972 DEBHEJMP_00003 4694 3 Oral 0.25 protein_coding synonymous_variant LOW 1689A>C Val563Val
M0120973 DEBHEJMP_00003 4716 4 Oral 0.33 protein_coding missense_variant MODERATE 1711G>A Val571Ile
M0120974 DEBHEJMP_00004 4742 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -31A>C None
M0120975 DEBHEJMP_00004 4793 3 Oral 0.25 protein_coding synonymous_variant LOW 21T>C Asn7Asn
M0120976 DEBHEJMP_00004 5129 6 Oral 0.50 protein_coding synonymous_variant LOW 357T>C Pro119Pro
M0120977 DEBHEJMP_00004 5192 7 Oral 0.58 protein_coding synonymous_variant LOW 420T>C Asn140Asn
M0120978 DEBHEJMP_00004 5246 7 Oral 0.58 protein_coding synonymous_variant LOW 474C>T Tyr158Tyr
M0120979 DEBHEJMP_00004 5247 7 Oral 0.58 protein_coding missense_variant MODERATE 475G>A Ala159Thr
M0120980 DEBHEJMP_00004 5264 7 Oral 0.58 protein_coding synonymous_variant LOW 492A>G Val164Val
M0120981 DEBHEJMP_00004 5289 7 Oral 0.58 protein_coding missense_variant MODERATE 517C>G Pro173Ala
M0120982 DEBHEJMP_00004 5327 7 Oral 0.58 protein_coding synonymous_variant LOW 555A>G Leu185Leu
M0120983 DEBHEJMP_00004 5369 7 Oral 0.58 protein_coding synonymous_variant LOW 597A>G Ser199Ser
M0120984 DEBHEJMP_00001 164 5 Oral 0.42 protein_coding synonymous_variant LOW 144A>G Ala48Ala
M0120985 DEBHEJMP_00001 333 3 Oral 0.25 protein_coding synonymous_variant LOW 313T>C Leu105Leu
M0120986 DEBHEJMP_00001 335 3 Oral 0.25 protein_coding synonymous_variant LOW 315G>A Leu105Leu
M0120987 DEBHEJMP_00001 521 7 Oral 0.58 protein_coding synonymous_variant LOW 501A>G Leu167Leu
M0120988 DEBHEJMP_00001 605 4 Oral 0.33 protein_coding synonymous_variant LOW 585A>G Ala195Ala
M0120989 DEBHEJMP_00001 734 3 Oral 0.25 protein_coding synonymous_variant LOW 714G>A Leu238Leu
M0120990 DEBHEJMP_00001 746 3 Oral 0.25 protein_coding synonymous_variant LOW 726C>T Ile242Ile
M0120991 DEBHEJMP_00001 848 4 Oral 0.33 protein_coding synonymous_variant LOW 828T>C Asp276Asp
M0120992 DEBHEJMP_00001 860 5 Oral 0.42 protein_coding synonymous_variant LOW 840T>C Arg280Arg
M0120993 DEBHEJMP_00001 1058 5 Oral 0.42 protein_coding synonymous_variant LOW 1038C>A Ser346Ser
M0120994 DEBHEJMP_00001 1196 4 Oral 0.33 protein_coding synonymous_variant LOW 1176T>G Ala392Ala
M0120995 DEBHEJMP_00001 1228 4 Oral 0.33 protein_coding missense_variant MODERATE 1208G>A Ser403Asn
M0120996 DEBHEJMP_00001 1517 8 Oral 0.67 protein_coding synonymous_variant LOW 1497T>C Asp499Asp
M0120997 DEBHEJMP_00001 1523 3 Oral 0.25 protein_coding synonymous_variant LOW 1503C>T Asp501Asp
M0120998 DEBHEJMP_00001 1574 3 Oral 0.25 protein_coding synonymous_variant LOW 1554T>C Asn518Asn
M0120999 DEBHEJMP_00002 2072 4 Oral 0.33 protein_coding missense_variant MODERATE 250C>A Leu84Met
M0121000 DEBHEJMP_00002 2318 7 Oral 0.58 protein_coding missense_variant MODERATE 496C>A Leu166Ile
M0121001 DEBHEJMP_00002 2350 9 Oral 0.75 protein_coding synonymous_variant LOW 528T>C Gly176Gly
M0121002 DEBHEJMP_00002 2746 3 Oral 0.25 protein_coding synonymous_variant LOW 924C>T Asp308Asp
M0121003 DEBHEJMP_00003 3137 3 Oral 0.25 protein_coding synonymous_variant LOW 132C>T Asp44Asp
M0121004 DEBHEJMP_00003 3161 4 Oral 0.33 protein_coding synonymous_variant LOW 156T>C Ser52Ser
M0121005 DEBHEJMP_00003 3626 3 Oral 0.25 protein_coding synonymous_variant LOW 621C>G Val207Val
M0121006 DEBHEJMP_00001 266 6 Oral 0.50 protein_coding synonymous_variant LOW 246T>C Cys82Cys
M0121007 DEBHEJMP_00001 527 4 Oral 0.33 protein_coding synonymous_variant LOW 507A>G Gln169Gln
M0121008 DEBHEJMP_00001 530 4 Oral 0.33 protein_coding synonymous_variant LOW 510C>T His170His
M0121009 DEBHEJMP_00001 536 4 Oral 0.33 protein_coding synonymous_variant LOW 516C>A Leu172Leu
M0121010 DEBHEJMP_00001 539 5 Oral 0.42 protein_coding synonymous_variant LOW 519T>C Asn173Asn
M0121011 DEBHEJMP_00001 1307 3 Oral 0.25 protein_coding synonymous_variant LOW 1287T>C Gly429Gly
M0121012 DEBHEJMP_00002 2182 6 Oral 0.50 protein_coding synonymous_variant LOW 360A>G Glu120Glu
M0121013 DEBHEJMP_00002 2362 8 Oral 0.67 protein_coding missense_variant MODERATE 540T>A Asp180Glu
M0121014 DEBHEJMP_00001 347 4 Oral 0.33 protein_coding synonymous_variant LOW 327T>C Asn109Asn
M0121015 DEBHEJMP_00001 1502 3 Oral 0.25 protein_coding synonymous_variant LOW 1482G>A Gln494Gln
M0121016 DEBHEJMP_00003 3498 3 Oral 0.25 protein_coding missense_variant MODERATE 493T>A Ser165Thr
M0121017 DEBHEJMP_00004 5183 6 Oral 0.50 protein_coding synonymous_variant LOW 411T>C His137His
M0121018 DEBHEJMP_00004 5240 4 Oral 0.33 protein_coding synonymous_variant LOW 468G>A Lys156Lys
M0121019 DEBHEJMP_00005 5521 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -134T>A None
M0121020 DEBHEJMP_00005 5537 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -118T>C None
M0121021 DEBHEJMP_00005 5566 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -89T>C None
M0121022 DEBHEJMP_00005 5570 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -85C>T None
M0121023 DEBHEJMP_00005 5571 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -84T>C None
M0121024 DEBHEJMP_00005 5595 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -60G>A None
M0121025 DEBHEJMP_00005 5603 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -52A>G None
M0121026 DEBHEJMP_00005 5635 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -20A>G None
M0121027 DEBHEJMP_00005 5638 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -17A>G None
M0121028 DEBHEJMP_00005 5639 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -16G>A None
M0121029 DEBHEJMP_00005 5645 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -10G>A None
M0121030 DEBHEJMP_00001 833 5 Oral 0.42 protein_coding synonymous_variant LOW 813C>T Asn271Asn
M0121031 DEBHEJMP_00005 5747 3 Oral 0.25 protein_coding synonymous_variant LOW 93T>A Arg31Arg
M0121032 DEBHEJMP_00005 5900 3 Oral 0.25 protein_coding synonymous_variant LOW 246T>C Thr82Thr
M0121033 DEBHEJMP_00005 5966 3 Oral 0.25 protein_coding synonymous_variant LOW 312A>G Glu104Glu
M0121034 DEBHEJMP_00005 5967 3 Oral 0.25 protein_coding missense_variant MODERATE 313G>A Glu105Lys
M0121035 DEBHEJMP_00005 6017 3 Oral 0.25 protein_coding synonymous_variant LOW 363C>T Gly121Gly
M0121036 DEBHEJMP_00005 6028 3 Oral 0.25 protein_coding missense_variant MODERATE 374C>T Pro125Leu
M0121037 DEBHEJMP_00005 6083 3 Oral 0.25 protein_coding synonymous_variant LOW 429T>C Ser143Ser
M0121038 DEBHEJMP_00005 6153 3 Oral 0.25 protein_coding missense_variant MODERATE 499G>A Val167Ile
M0121039 DEBHEJMP_00004 4922 3 Oral 0.25 protein_coding synonymous_variant LOW 150C>T Ala50Ala
M0121040 DEBHEJMP_00003 4352 3 Oral 0.25 protein_coding synonymous_variant LOW 1347T>C His449His






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term