Annotation Categories of the Plasmid Cluster







Summary of the plasmid cluster

Basic Information about the Plasmid Cluster

  Cluster Information   Plasmid Cluster ID   C2389
  Reference Plasmid   1111525849768046_bin.37__k141_158658
  Reference Plasmid Size   10583
  Reference Plasmid GC Content   0.40
  Reference Plasmid Mobility Type   non-mobilizable





Mutation sites in the plasmid cluster


The table lists mutations identified in the plasmid cluster.
Note: Mutations identified in this plasmid cluster are listed below. Click on a mutation ID to view full details..

mutid gname pos count tissue frequnt biotype consequence impact nucchange aachange
M0121041 PACJLILM_00001 38 5 Oral 0.42 protein_coding synonymous_variant LOW 27T>A Ile9Ile
M0121042 PACJLILM_00001 62 6 Oral 0.50 protein_coding synonymous_variant LOW 51T>C Arg17Arg
M0121043 PACJLILM_00001 128 10 Oral 0.83 protein_coding synonymous_variant LOW 117T>C Asp39Asp
M0121044 PACJLILM_00001 138 5 Oral 0.42 protein_coding synonymous_variant LOW 127T>C Leu43Leu
M0121045 PACJLILM_00001 195 6 Oral 0.50 protein_coding missense_variant MODERATE 184G>A Asp62Asn
M0121046 PACJLILM_00001 302 10 Oral 0.83 protein_coding synonymous_variant LOW 291A>G Gln97Gln
M0121047 PACJLILM_00001 347 7 Oral 0.58 protein_coding synonymous_variant LOW 336T>A Val112Val
M0121048 PACJLILM_00001 476 9 Oral 0.75 protein_coding synonymous_variant LOW 465T>C Gly155Gly
M0121049 PACJLILM_00001 500 3 Oral 0.25 protein_coding synonymous_variant LOW 489C>T Tyr163Tyr
M0121050 PACJLILM_00002 590 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -380A>G None
M0121051 PACJLILM_00002 594 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -376C>T None
M0121052 PACJLILM_00002 599 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -371C>T None
M0121053 PACJLILM_00002 604 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -366G>T None
M0121054 PACJLILM_00002 605 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -365T>C None
M0121055 PACJLILM_00002 620 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -350T>C None
M0121056 PACJLILM_00002 1452 6 Oral 0.50 protein_coding synonymous_variant LOW 483C>T Asp161Asp
M0121057 PACJLILM_00002 1482 5 Oral 0.42 protein_coding synonymous_variant LOW 513T>C Ser171Ser
M0121058 PACJLILM_00002 1530 4 Oral 0.33 protein_coding synonymous_variant LOW 561T>C Asn187Asn
M0121059 PACJLILM_00002 1551 5 Oral 0.42 protein_coding synonymous_variant LOW 582T>C Gly194Gly
M0121060 PACJLILM_00002 1650 3 Oral 0.25 protein_coding synonymous_variant LOW 681A>G Ala227Ala
M0121061 PACJLILM_00002 1701 8 Oral 0.67 protein_coding synonymous_variant LOW 732T>C Thr244Thr
M0121062 PACJLILM_00002 1794 4 Oral 0.33 protein_coding synonymous_variant LOW 825T>C Gly275Gly
M0121063 PACJLILM_00002 1830 8 Oral 0.67 protein_coding synonymous_variant LOW 861C>T Asp287Asp
M0121064 PACJLILM_00002 1848 10 Oral 0.83 protein_coding synonymous_variant LOW 879T>A Thr293Thr
M0121065 PACJLILM_00002 1860 8 Oral 0.67 protein_coding synonymous_variant LOW 891T>C Leu297Leu
M0121066 PACJLILM_00002 1874 8 Oral 0.67 protein_coding missense_variant MODERATE 905A>G Asn302Ser
M0121067 PACJLILM_00002 1893 10 Oral 0.83 protein_coding synonymous_variant LOW 924T>C Asn308Asn
M0121068 PACJLILM_00002 2079 3 Oral 0.25 protein_coding synonymous_variant LOW 1110T>C Ser370Ser
M0121069 PACJLILM_00002 2125 4 Oral 0.33 protein_coding missense_variant MODERATE 1156C>G Gln386Glu
M0121070 PACJLILM_00002 2187 8 Oral 0.67 protein_coding synonymous_variant LOW 1218T>C Ser406Ser
M0121071 PACJLILM_00002 2226 11 Oral 0.92 protein_coding synonymous_variant LOW 1257G>A Lys419Lys
M0121072 PACJLILM_00002 2247 3 Oral 0.25 protein_coding synonymous_variant LOW 1278A>G Ala426Ala
M0121073 PACJLILM_00002 2298 6 Oral 0.50 protein_coding synonymous_variant LOW 1329T>C Asp443Asp
M0121074 PACJLILM_00002 2313 10 Oral 0.83 protein_coding synonymous_variant LOW 1344A>T Leu448Leu
M0121075 PACJLILM_00002 2356 6 Oral 0.50 protein_coding missense_variant MODERATE 1387C>A Gln463Lys
M0121076 PACJLILM_00003 2379 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -27T>C None
M0121077 PACJLILM_00003 2525 11 Oral 0.92 protein_coding synonymous_variant LOW 120G>T Gly40Gly
M0121078 PACJLILM_00003 2604 11 Oral 0.92 protein_coding missense_variant MODERATE 199A>G Ile67Val
M0121079 PACJLILM_00003 2606 9 Oral 0.75 protein_coding missense_variant MODERATE 201A>G Ile67Met
M0121080 PACJLILM_00003 2607 6 Oral 0.50 protein_coding synonymous_variant LOW 202C>T Leu68Leu
M0121081 PACJLILM_00003 2677 11 Oral 0.92 protein_coding missense_variant MODERATE 272T>C Val91Ala
M0121082 PACJLILM_00003 2996 11 Oral 0.92 protein_coding synonymous_variant LOW 591T>C Gly197Gly
M0121083 PACJLILM_00003 3002 11 Oral 0.92 protein_coding synonymous_variant LOW 597C>T Ala199Ala
M0121084 PACJLILM_00004 3144 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -40C>T None
M0121085 PACJLILM_00004 3176 10 Oral 0.83 protein_coding upstream_gene_variant MODIFIER -8T>G None
M0121086 PACJLILM_00004 3342 10 Oral 0.83 protein_coding synonymous_variant LOW 159A>G Arg53Arg
M0121087 PACJLILM_00004 3432 7 Oral 0.58 protein_coding synonymous_variant LOW 249A>G Val83Val
M0121088 PACJLILM_00004 3696 7 Oral 0.58 protein_coding synonymous_variant LOW 513G>A Gln171Gln
M0121089 PACJLILM_00004 3903 3 Oral 0.25 protein_coding synonymous_variant LOW 720G>A Ala240Ala
M0121090 PACJLILM_00004 3925 8 Oral 0.67 protein_coding missense_variant MODERATE 742G>A Gly248Ser
M0121091 PACJLILM_00005 3975 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -58C>T None
M0121092 PACJLILM_00005 3985 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -48G>A None
M0121093 PACJLILM_00005 4053 10 Oral 0.83 protein_coding synonymous_variant LOW 21C>A Ile7Ile
M0121094 PACJLILM_00005 4078 10 Oral 0.83 protein_coding missense_variant MODERATE 46T>C Phe16Leu
M0121095 PACJLILM_00005 4164 10 Oral 0.83 protein_coding synonymous_variant LOW 132C>T Gly44Gly
M0121096 PACJLILM_00005 4440 8 Oral 0.67 protein_coding synonymous_variant LOW 408A>G Ala136Ala
M0121097 PACJLILM_00005 4653 7 Oral 0.58 protein_coding synonymous_variant LOW 621C>T Gly207Gly
M0121098 PACJLILM_00005 4770 10 Oral 0.83 protein_coding synonymous_variant LOW 738C>T Pro246Pro
M0121099 PACJLILM_00005 4870 6 Oral 0.50 protein_coding missense_variant MODERATE 838T>C Ser280Pro
M0121100 PACJLILM_00005 4872 6 Oral 0.50 protein_coding synonymous_variant LOW 840T>G Ser280Ser
M0121101 PACJLILM_00005 4878 9 Oral 0.75 protein_coding synonymous_variant LOW 846T>C His282His
M0121102 PACJLILM_00005 4929 10 Oral 0.83 protein_coding synonymous_variant LOW 897T>C Asn299Asn
M0121103 PACJLILM_00005 4950 9 Oral 0.75 protein_coding synonymous_variant LOW 918T>G Ser306Ser
M0121104 PACJLILM_00005 5160 5 Oral 0.42 protein_coding synonymous_variant LOW 1128C>A Gly376Gly
M0121105 PACJLILM_00005 5208 5 Oral 0.42 protein_coding synonymous_variant LOW 1176A>G Leu392Leu
M0121106 PACJLILM_00005 5250 10 Oral 0.83 protein_coding synonymous_variant LOW 1218T>C Gly406Gly
M0121107 PACJLILM_00005 5253 10 Oral 0.83 protein_coding synonymous_variant LOW 1221T>C Asp407Asp
M0121108 PACJLILM_00005 5280 9 Oral 0.75 protein_coding synonymous_variant LOW 1248C>T Arg416Arg
M0121109 PACJLILM_00005 5343 10 Oral 0.83 protein_coding synonymous_variant LOW 1311G>A Lys437Lys
M0121110 PACJLILM_00005 5358 9 Oral 0.75 protein_coding synonymous_variant LOW 1326T>C Asn442Asn
M0121111 PACJLILM_00005 5568 3 Oral 0.25 protein_coding synonymous_variant LOW 1536C>T Asn512Asn
M0121112 PACJLILM_00005 5580 3 Oral 0.25 protein_coding synonymous_variant LOW 1548T>C Tyr516Tyr
M0121113 PACJLILM_00005 5629 10 Oral 0.83 protein_coding missense_variant MODERATE 1597T>C Ser533Pro
M0121114 PACJLILM_00005 5667 6 Oral 0.50 protein_coding synonymous_variant LOW 1635G>A Gln545Gln
M0121115 PACJLILM_00005 5871 8 Oral 0.67 protein_coding synonymous_variant LOW 1839A>G Ser613Ser
M0121116 PACJLILM_00005 5886 8 Oral 0.67 protein_coding synonymous_variant LOW 1854A>G Ser618Ser
M0121117 PACJLILM_00005 5964 5 Oral 0.42 protein_coding synonymous_variant LOW 1932C>T Thr644Thr
M0121118 PACJLILM_00005 5967 5 Oral 0.42 protein_coding synonymous_variant LOW 1935A>T Ser645Ser
M0121119 PACJLILM_00005 6000 3 Oral 0.25 protein_coding synonymous_variant LOW 1968A>T Ser656Ser
M0121120 PACJLILM_00005 6072 10 Oral 0.83 protein_coding synonymous_variant LOW 2040A>T Ala680Ala
M0121121 PACJLILM_00005 6084 10 Oral 0.83 protein_coding synonymous_variant LOW 2052C>T Asn684Asn
M0121122 PACJLILM_00005 6180 10 Oral 0.83 protein_coding synonymous_variant LOW 2148T>C Ser716Ser
M0121123 PACJLILM_00005 6186 5 Oral 0.42 protein_coding synonymous_variant LOW 2154G>A Thr718Thr
M0121124 PACJLILM_00005 6351 9 Oral 0.75 protein_coding synonymous_variant LOW 2319T>A Gly773Gly
M0121125 PACJLILM_00005 6381 3 Oral 0.25 protein_coding synonymous_variant LOW 2349C>T Asn783Asn
M0121126 PACJLILM_00005 6453 6 Oral 0.50 protein_coding synonymous_variant LOW 2421C>T Asn807Asn
M0121127 PACJLILM_00006 7097 5 Oral 0.42 protein_coding synonymous_variant LOW 372T>A Ile124Ile
M0121128 PACJLILM_00006 7184 8 Oral 0.67 protein_coding synonymous_variant LOW 459T>G Ser153Ser
M0121129 PACJLILM_00007 7446 9 Oral 0.75 protein_coding synonymous_variant LOW 180G>A Glu60Glu
M0121130 PACJLILM_00008 7827 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -93G>A None
M0121131 PACJLILM_00008 8195 3 Oral 0.25 protein_coding synonymous_variant LOW 276G>A Ala92Ala
M0121132 PACJLILM_00009 8454 10 Oral 0.83 protein_coding synonymous_variant LOW 39A>T Pro13Pro
M0121133 PACJLILM_00009 8493 10 Oral 0.83 protein_coding synonymous_variant LOW 78C>T Ile26Ile
M0121134 PACJLILM_00009 8601 9 Oral 0.75 protein_coding synonymous_variant LOW 186A>C Thr62Thr
M0121135 PACJLILM_00009 8853 10 Oral 0.83 protein_coding synonymous_variant LOW 438T>C Asn146Asn
M0121136 PACJLILM_00009 8872 10 Oral 0.83 protein_coding missense_variant MODERATE 457A>G Thr153Ala
M0121137 PACJLILM_00009 8949 10 Oral 0.83 protein_coding synonymous_variant LOW 534T>C Tyr178Tyr
M0121138 PACJLILM_00009 8952 5 Oral 0.42 protein_coding synonymous_variant LOW 537C>T Phe179Phe
M0121139 PACJLILM_00009 8976 10 Oral 0.83 protein_coding synonymous_variant LOW 561C>T Ile187Ile
M0121140 PACJLILM_00009 9066 8 Oral 0.67 protein_coding synonymous_variant LOW 651G>A Gln217Gln
M0121141 PACJLILM_00010 9285 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -60C>T None
M0121142 PACJLILM_00010 9291 10 Oral 0.83 protein_coding upstream_gene_variant MODIFIER -54A>G None
M0121143 PACJLILM_00010 9340 9 Oral 0.75 protein_coding upstream_gene_variant MODIFIER -5C>T None
M0121144 PACJLILM_00010 9467 9 Oral 0.75 protein_coding synonymous_variant LOW 123T>G Ser41Ser
M0121145 PACJLILM_00005 9935 10 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *3260T>A None
M0121146 PACJLILM_00005 9986 10 Oral 0.83 protein_coding downstream_gene_variant MODIFIER *3311A>G None
M0121147 PACJLILM_00005 10235 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3560C>T None
M0121148 PACJLILM_00005 10238 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3563C>T None
M0121149 PACJLILM_00005 10281 9 Oral 0.75 protein_coding downstream_gene_variant MODIFIER *3606G>A None
M0121150 PACJLILM_00005 10319 6 Oral 0.50 protein_coding downstream_gene_variant MODIFIER *3644C>T None
M0121151 PACJLILM_00005 10496 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3821G>A None
M0121152 PACJLILM_00001 101 3 Oral 0.25 protein_coding synonymous_variant LOW 90C>T Gly30Gly
M0121153 PACJLILM_00001 113 4 Oral 0.33 protein_coding synonymous_variant LOW 102A>G Lys34Lys
M0121154 PACJLILM_00001 176 3 Oral 0.25 protein_coding synonymous_variant LOW 165T>C His55His
M0121155 PACJLILM_00001 374 3 Oral 0.25 protein_coding synonymous_variant LOW 363T>C Phe121Phe
M0121156 PACJLILM_00001 491 5 Oral 0.42 protein_coding synonymous_variant LOW 480C>T Gly160Gly
M0121157 PACJLILM_00002 588 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -382T>C None
M0121158 PACJLILM_00002 632 6 Oral 0.50 protein_coding upstream_gene_variant MODIFIER -338T>C None
M0121159 PACJLILM_00002 652 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -318A>C None
M0121160 PACJLILM_00002 667 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -303C>T None
M0121161 PACJLILM_00002 784 5 Oral 0.42 protein_coding upstream_gene_variant MODIFIER -186C>G None
M0121162 PACJLILM_00002 810 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -160G>A None
M0121163 PACJLILM_00002 1533 5 Oral 0.42 protein_coding synonymous_variant LOW 564C>T Gly188Gly
M0121164 PACJLILM_00002 1548 6 Oral 0.50 protein_coding synonymous_variant LOW 579C>T Phe193Phe
M0121165 PACJLILM_00002 1566 7 Oral 0.58 protein_coding synonymous_variant LOW 597A>T Ala199Ala
M0121166 PACJLILM_00002 1614 5 Oral 0.42 protein_coding synonymous_variant LOW 645C>T Ala215Ala
M0121167 PACJLILM_00002 1753 4 Oral 0.33 protein_coding missense_variant MODERATE 784A>G Ile262Val
M0121168 PACJLILM_00002 1896 4 Oral 0.33 protein_coding synonymous_variant LOW 927C>A Val309Val
M0121169 PACJLILM_00002 1903 4 Oral 0.33 protein_coding missense_variant MODERATE 934A>T Ile312Phe
M0121170 PACJLILM_00002 1988 3 Oral 0.25 protein_coding missense_variant MODERATE 1019C>A Pro340Gln
M0121171 PACJLILM_00002 2028 7 Oral 0.58 protein_coding synonymous_variant LOW 1059C>T Asn353Asn
M0121172 PACJLILM_00002 2160 7 Oral 0.58 protein_coding synonymous_variant LOW 1191A>G Ser397Ser
M0121173 PACJLILM_00002 2241 4 Oral 0.33 protein_coding synonymous_variant LOW 1272G>A Gln424Gln
M0121174 PACJLILM_00002 2361 7 Oral 0.58 protein_coding synonymous_variant LOW 1392C>T Phe464Phe
M0121175 PACJLILM_00003 2486 5 Oral 0.42 protein_coding synonymous_variant LOW 81T>C Ser27Ser
M0121176 PACJLILM_00005 3935 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -98T>C None
M0121177 PACJLILM_00005 4011 4 Oral 0.33 protein_coding upstream_gene_variant MODIFIER -22T>A None
M0121178 PACJLILM_00005 5424 4 Oral 0.33 protein_coding synonymous_variant LOW 1392A>T Gly464Gly
M0121179 PACJLILM_00005 5802 3 Oral 0.25 protein_coding synonymous_variant LOW 1770A>T Gly590Gly
M0121180 PACJLILM_00005 6366 4 Oral 0.33 protein_coding synonymous_variant LOW 2334G>A Val778Val
M0121181 PACJLILM_00007 7247 7 Oral 0.58 protein_coding upstream_gene_variant MODIFIER -20T>C None
M0121182 PACJLILM_00007 7647 4 Oral 0.33 protein_coding synonymous_variant LOW 381A>T Val127Val
M0121183 PACJLILM_00008 7973 8 Oral 0.67 protein_coding synonymous_variant LOW 54T>C Gly18Gly
M0121184 PACJLILM_00008 8129 3 Oral 0.25 protein_coding synonymous_variant LOW 210C>T Asp70Asp
M0121185 PACJLILM_00009 8629 4 Oral 0.33 protein_coding synonymous_variant LOW 214C>T Leu72Leu
M0121186 PACJLILM_00009 8802 3 Oral 0.25 protein_coding synonymous_variant LOW 387T>A Ile129Ile
M0121187 PACJLILM_00010 9665 3 Oral 0.25 protein_coding synonymous_variant LOW 321G>A Glu107Glu
M0121188 PACJLILM_00005 10097 4 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3422C>T None
M0121189 PACJLILM_00001 401 4 Oral 0.33 protein_coding synonymous_variant LOW 390T>C Asp130Asp
M0121190 PACJLILM_00002 1236 5 Oral 0.42 protein_coding synonymous_variant LOW 267T>C Pro89Pro
M0121191 PACJLILM_00002 1278 5 Oral 0.42 protein_coding synonymous_variant LOW 309C>T Thr103Thr
M0121192 PACJLILM_00002 1335 4 Oral 0.33 protein_coding synonymous_variant LOW 366T>C Tyr122Tyr
M0121193 PACJLILM_00002 2078 5 Oral 0.42 protein_coding missense_variant MODERATE 1109G>A Ser370Asn
M0121194 PACJLILM_00005 4941 3 Oral 0.25 protein_coding synonymous_variant LOW 909G>A Val303Val
M0121195 PACJLILM_00005 5082 3 Oral 0.25 protein_coding synonymous_variant LOW 1050T>C Tyr350Tyr
M0121196 PACJLILM_00005 5205 3 Oral 0.25 protein_coding synonymous_variant LOW 1173T>C Arg391Arg
M0121197 PACJLILM_00005 5256 6 Oral 0.50 protein_coding synonymous_variant LOW 1224T>C Leu408Leu
M0121198 PACJLILM_00009 8487 3 Oral 0.25 protein_coding synonymous_variant LOW 72A>G Leu24Leu
M0121199 PACJLILM_00005 9724 5 Oral 0.42 protein_coding downstream_gene_variant MODIFIER *3049T>C None
M0121200 PACJLILM_00005 9815 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3140T>A None
M0121201 PACJLILM_00005 9818 4 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3143T>A None
M0121202 PACJLILM_00005 9977 4 Oral 0.33 protein_coding downstream_gene_variant MODIFIER *3302A>T None
M0121203 PACJLILM_00005 10340 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3665A>G None
M0121204 PACJLILM_00001 146 3 Oral 0.25 protein_coding synonymous_variant LOW 135C>T Gly45Gly
M0121205 PACJLILM_00006 6965 3 Oral 0.25 protein_coding synonymous_variant LOW 240A>G Gln80Gln
M0121206 PACJLILM_00006 7070 3 Oral 0.25 protein_coding synonymous_variant LOW 345G>A Ala115Ala
M0121207 PACJLILM_00009 9063 3 Oral 0.25 protein_coding synonymous_variant LOW 648T>C Pro216Pro
M0121208 PACJLILM_00005 9914 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3239C>T None
M0121209 PACJLILM_00002 1458 3 Oral 0.25 protein_coding synonymous_variant LOW 489T>C Phe163Phe
M0121210 PACJLILM_00002 1938 3 Oral 0.25 protein_coding synonymous_variant LOW 969T>C Ser323Ser
M0121211 PACJLILM_00002 2013 4 Oral 0.33 protein_coding synonymous_variant LOW 1044T>C Val348Val
M0121212 PACJLILM_00004 3924 3 Oral 0.25 protein_coding missense_variant MODERATE 741G>T Lys247Asn
M0121213 PACJLILM_00005 3964 3 Oral 0.25 protein_coding upstream_gene_variant MODIFIER -69C>T None
M0121214 PACJLILM_00005 5706 4 Oral 0.33 protein_coding synonymous_variant LOW 1674C>G Ala558Ala
M0121215 PACJLILM_00005 5733 4 Oral 0.33 protein_coding synonymous_variant LOW 1701C>T Gly567Gly
M0121216 PACJLILM_00009 8610 3 Oral 0.25 protein_coding synonymous_variant LOW 195A>C Ala65Ala
M0121217 PACJLILM_00009 8742 3 Oral 0.25 protein_coding synonymous_variant LOW 327T>C Gly109Gly
M0121218 PACJLILM_00002 1932 4 Oral 0.33 protein_coding synonymous_variant LOW 963A>T Thr321Thr
M0121219 PACJLILM_00005 4663 3 Oral 0.25 protein_coding missense_variant MODERATE 631A>G Ile211Val
M0121220 PACJLILM_00004 3720 4 Oral 0.33 protein_coding synonymous_variant LOW 537C>T Pro179Pro
M0121221 PACJLILM_00009 8655 3 Oral 0.25 protein_coding synonymous_variant LOW 240T>C Gly80Gly
M0121222 PACJLILM_00009 8721 4 Oral 0.33 protein_coding synonymous_variant LOW 306T>C Asn102Asn
M0121223 PACJLILM_00005 9863 3 Oral 0.25 protein_coding downstream_gene_variant MODIFIER *3188C>T None






Analysis of virulence factors contributing to bacterial pathogenicity


This table presents virulence factors identified within the plasmid cluster.
      Note: Virulence factor analysis was performed using VFDB. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known virulence factors are listed.

Gene Name vf_gene_id vf_name identity evalue qstart qend query_coverage subject_coverage vf_category gene_description condition







        Analysis of biocide and heavy metal resistance genes to assess antimicrobial risk and environmental impact


This table presents biocides and heavy metals resistance genes identified within the plasmid cluster.
      Note: Analyzing biocide and heavy metal resistance genes based on BacMet to evaluate bacterial resistance risk and the potential impact of environmental heavy metal contamination. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, E-value < 1e-5) to known biocide and heavy metal resistance genes are listed.

Gene Name compound identity evalue qstart qend query_coverage subject_coverage group






        Analyzing antimicrobial resistance genes to assess bacterial resistance to antibiotics and other antimicrobial agents


This table presents antimicrobial resistance genes identified within the plasmid cluster.
      Note: Antimicrobial resistance was performed using CARD. Genes in plasmid clusters showing strong homology (identity > 70%, coverage > 70%, E-value < 1e-5) to known antimicrobial resistance genes are listed.

Gene Name aro_accession identity evalue qstart qend query_coverage subject_coverage drug_class amr_gene_family resistance_mechanism






Analysis of pathogenicity genes to explore pathogen-host interactions


This table presents host pathogen-host interactions within the plasmid cluster.
      Note: Analyzing pathogenicity-related genes using PHI-base to understand pathogen virulence mechanisms and their impact on host interactions. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e-5) to known pathogenicity-related genes are listed.

Gene Name phi_molconn_id host gene_name identity evalue qstart qend query_coverage subject_coverage host_descripton disease_name function phenotype_of_mutant






        Analyzing carbohydrate-active enzyme genes to uncover mechanisms of nutrient degradation


This table presents carbohydrate-active enzyme genes identified within the plasmid cluster.
      Note: Annotation of carbohydrate-active enzyme genes was performed using CAZy to explore mechanisms of nutrient breakdown and utilization. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known CAZyme genes are listed.

Gene Name cazy_id identity evalue qstart qend query_coverage subject_coverage





        Analyzing transport proteins to understand bacterial strategies for substrate uptake and detoxification


This table presents transport proteins within the plasmid cluster.
      Note: Investigation of transport proteins based on TCDB to uncover bacterial mechanisms of substrate transport and environmental detoxification. Genes in plasmid clusters showing strong homology (identity > 70%, subject coverage > 70%, and E-value < 1e−5) to known transport protein entries are listed.

Gene Name tcid identity evalue qstart qend query_coverage subject_coverage class_field class_term subclass subclass_term family family_term